ISNpe18

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003372 ND Natrinema pellirubrum
Natrinema pellirubrum DSM 15624
DNA section
IS Length : 1070 bp

Ends


IR Length : 21/24

IRL : GAGCGTGTCATAGAAACGTTCTCAACGAAGGCAGCAGGGTGTGGAAACTA
IRR : GAGCGTGTCATAGAATCGATCACAGGGTTTTGAGCTTCGTTCGTCCGGGA

Insertion site


Left flankDirect repeatRight flankDR Length
CTGGCTGGTGAGCAGACGTT0
CTGGCTGGTGTAATAAGTAG0
TACTATAACTGGCTGGTGAGGTACTCGA8
TTTATTTAGCTTCGTCTTGTTTCTGAT7

DNA sequence

GAGCGTGTCATAGAAACGTTCTCAACGAAGGCAGCAGGGTGTGGAAACTATGTCCAGCAGCGCCACAACCCTGCAAGGCGTAGCTTCGGTTGACGACTTC
TTGAATGTCGCGGCTACGGAGACAGCACCGCTATTCGAGTACTTAGAGTTCGAGTTTCTGCTGGAGTACGACGTGTTCGCCCCCGCTTCGAGGGGGCGAA
CACGAGTCCACAAGCCCCCAGAACTCTTCAAAGGCTTCCTGCACTGCTACTACAAAGGCATCTACGGCCCACGACCAGTCACACGAGAACTCCACAATAC
ACTCACTTGGCTCTCCTGCGGTTTCGAGAAGCCGCCCTCACGAGACACTGTTGATCGGTTTCTCACCGATCTTGAATTGGTGGTGGATGATGTCTTCGAC
CGCCTCGTCGAGCAGGCCGCCTGCCGGGGCCTGCTCGACTCCACATACCGCATCGATTCGACTCACGTCACTGCAATCCAGTACAACGATGAAGCGACGT
GGAACTACGACTCAACGGCTGAGGAACACTACTACGGATTCGGCTGTGTGATTGTGTCGGCCGGGCCAAAGATTCCGATTGCTGCAGAGTTCACACAGCG
AAAGCAGATCGATGCTGAGACGGCGATGCGCGTCACGAAGGACGCGCTCGCCGTCGATACACCGATCTGGATGCTCGGAGACAGCGCTTACGACGTGCTG
GAGTGGCACGACTTCCTGCTGTCGCAGGGAGTCGTGCCGATTGCGCCGTACAACCCACGCAATACGGACGATCCGCTTGACATCGAATACAGGGTCGAGG
ACCGCATTGACGAACACGCCGAAGACATCAGTCTCAAACAATCAGTACTCGCCGAGACGTATGATCATCGGACGCAAGTGGAACGAACAAACGAAGCCTG
CAAGGACTGCGGCCTCGGGCACGTCCGCGCCCGAGGCCGCGTACATGCACGAACACAGGTGTTCCTTGCACTGAGTCTCCGCGTGATCGTCGCAGTTACC
AACTACGAAAGAGGACACAATCCCGGACGAACGAAGCTCAAAACCCTGTGATCGATTCTATGACACGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1002 bp333 aa501051+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSSSATTLQGVASVDDFLNVAATETAPLFEYLEFEFLLEYDVFAPASRGRTRVHKPPELFKGFLHCYYKGIYGPRPVTRELHNTLTWLSCGFEKPPSRDT
VDRFLTDLELVVDDVFDRLVEQAACRGLLDSTYRIDSTHVTAIQYNDEATWNYDSTAEEHYYGFGCVIVSAGPKIPIAAEFTQRKQIDAETAMRVTKDAL
AVDTPIWMLGDSAYDVLEWHDFLLSQGVVPIAPYNPRNTDDPLDIEYRVEDRIDEHAEDISLKQSVLAETYDHRTQVERTNEACKDCGLGHVRARGRVHA
RTQVFLALSLRVIVAVTNYERGHNPGRTKLKTL

 

Blast result :
Comments
ISNpe18 is 88% aa similar to ISNpe2.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank