ISNpe18
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003372 | ND | Natrinema pellirubrum | Natrinema pellirubrum DSM 15624 |
DNA section
IS Length : 1070 bp
Ends
IR Length : 21/24
IRL : GAGCGTGTCATAGAAACGTTCTCAACGAAGGCAGCAGGGTGTGGAAACTA
IRR : GAGCGTGTCATAGAATCGATCACAGGGTTTTGAGCTTCGTTCGTCCGGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGGCTGGTG | AGCAGACGTT | 0 | |
CTGGCTGGTG | TAATAAGTAG | 0 | |
TACTATAACT | GGCTGGTG | AGGTACTCGA | 8 |
TTTATTTAGC | TTCGTCT | TGTTTCTGAT | 7 |
DNA sequence
GAGCGTGTCATAGAAACGTTCTCAACGAAGGCAGCAGGGTGTGGAAACTATGTCCAGCAGCGCCACAACCCTGCAAGGCGTAGCTTCGGTTGACGACTTC
TTGAATGTCGCGGCTACGGAGACAGCACCGCTATTCGAGTACTTAGAGTTCGAGTTTCTGCTGGAGTACGACGTGTTCGCCCCCGCTTCGAGGGGGCGAA
CACGAGTCCACAAGCCCCCAGAACTCTTCAAAGGCTTCCTGCACTGCTACTACAAAGGCATCTACGGCCCACGACCAGTCACACGAGAACTCCACAATAC
ACTCACTTGGCTCTCCTGCGGTTTCGAGAAGCCGCCCTCACGAGACACTGTTGATCGGTTTCTCACCGATCTTGAATTGGTGGTGGATGATGTCTTCGAC
CGCCTCGTCGAGCAGGCCGCCTGCCGGGGCCTGCTCGACTCCACATACCGCATCGATTCGACTCACGTCACTGCAATCCAGTACAACGATGAAGCGACGT
GGAACTACGACTCAACGGCTGAGGAACACTACTACGGATTCGGCTGTGTGATTGTGTCGGCCGGGCCAAAGATTCCGATTGCTGCAGAGTTCACACAGCG
AAAGCAGATCGATGCTGAGACGGCGATGCGCGTCACGAAGGACGCGCTCGCCGTCGATACACCGATCTGGATGCTCGGAGACAGCGCTTACGACGTGCTG
GAGTGGCACGACTTCCTGCTGTCGCAGGGAGTCGTGCCGATTGCGCCGTACAACCCACGCAATACGGACGATCCGCTTGACATCGAATACAGGGTCGAGG
ACCGCATTGACGAACACGCCGAAGACATCAGTCTCAAACAATCAGTACTCGCCGAGACGTATGATCATCGGACGCAAGTGGAACGAACAAACGAAGCCTG
CAAGGACTGCGGCCTCGGGCACGTCCGCGCCCGAGGCCGCGTACATGCACGAACACAGGTGTTCCTTGCACTGAGTCTCCGCGTGATCGTCGCAGTTACC
AACTACGAAAGAGGACACAATCCCGGACGAACGAAGCTCAAAACCCTGTGATCGATTCTATGACACGCTC
TTGAATGTCGCGGCTACGGAGACAGCACCGCTATTCGAGTACTTAGAGTTCGAGTTTCTGCTGGAGTACGACGTGTTCGCCCCCGCTTCGAGGGGGCGAA
CACGAGTCCACAAGCCCCCAGAACTCTTCAAAGGCTTCCTGCACTGCTACTACAAAGGCATCTACGGCCCACGACCAGTCACACGAGAACTCCACAATAC
ACTCACTTGGCTCTCCTGCGGTTTCGAGAAGCCGCCCTCACGAGACACTGTTGATCGGTTTCTCACCGATCTTGAATTGGTGGTGGATGATGTCTTCGAC
CGCCTCGTCGAGCAGGCCGCCTGCCGGGGCCTGCTCGACTCCACATACCGCATCGATTCGACTCACGTCACTGCAATCCAGTACAACGATGAAGCGACGT
GGAACTACGACTCAACGGCTGAGGAACACTACTACGGATTCGGCTGTGTGATTGTGTCGGCCGGGCCAAAGATTCCGATTGCTGCAGAGTTCACACAGCG
AAAGCAGATCGATGCTGAGACGGCGATGCGCGTCACGAAGGACGCGCTCGCCGTCGATACACCGATCTGGATGCTCGGAGACAGCGCTTACGACGTGCTG
GAGTGGCACGACTTCCTGCTGTCGCAGGGAGTCGTGCCGATTGCGCCGTACAACCCACGCAATACGGACGATCCGCTTGACATCGAATACAGGGTCGAGG
ACCGCATTGACGAACACGCCGAAGACATCAGTCTCAAACAATCAGTACTCGCCGAGACGTATGATCATCGGACGCAAGTGGAACGAACAAACGAAGCCTG
CAAGGACTGCGGCCTCGGGCACGTCCGCGCCCGAGGCCGCGTACATGCACGAACACAGGTGTTCCTTGCACTGAGTCTCCGCGTGATCGTCGCAGTTACC
AACTACGAAAGAGGACACAATCCCGGACGAACGAAGCTCAAAACCCTGTGATCGATTCTATGACACGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1002 bp | 333 aa | 50 | 1051 | + | No |
Chemistry : DDE
ORF sequence :
MSSSATTLQGVASVDDFLNVAATETAPLFEYLEFEFLLEYDVFAPASRGRTRVHKPPELFKGFLHCYYKGIYGPRPVTRELHNTLTWLSCGFEKPPSRDT
VDRFLTDLELVVDDVFDRLVEQAACRGLLDSTYRIDSTHVTAIQYNDEATWNYDSTAEEHYYGFGCVIVSAGPKIPIAAEFTQRKQIDAETAMRVTKDAL
AVDTPIWMLGDSAYDVLEWHDFLLSQGVVPIAPYNPRNTDDPLDIEYRVEDRIDEHAEDISLKQSVLAETYDHRTQVERTNEACKDCGLGHVRARGRVHA
RTQVFLALSLRVIVAVTNYERGHNPGRTKLKTL
VDRFLTDLELVVDDVFDRLVEQAACRGLLDSTYRIDSTHVTAIQYNDEATWNYDSTAEEHYYGFGCVIVSAGPKIPIAAEFTQRKQIDAETAMRVTKDAL
AVDTPIWMLGDSAYDVLEWHDFLLSQGVVPIAPYNPRNTDDPLDIEYRVEDRIDEHAEDISLKQSVLAETYDHRTQVERTNEACKDCGLGHVRARGRVHA
RTQVFLALSLRVIVAVTNYERGHNPGRTKLKTL
Blast result :
Comments
ISNpe18 is 88% aa similar to ISNpe2.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank