ISHli4
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halohasta litchfieldiae | Halohasta litchfieldiae |
DNA section
IS Length : 1425 bp
Ends
Left end : AGAGAATCGAGGAGAATGCCTGACCCTTTAGGGTCAGGATGAATCCGACAATCGATGACACAACCCACTGTCGATAGCACGGCTTGATATTCCAACAGAT II struct. : No
Right end : TCGACGGGTCACGCGAAAGCGTACTTGTACCCCGAGGAAACGCGCAACCCGAATATCCACTTCGTGGATTCCCGCGTCTTTAGGCGCGGGAGGATGTCAA II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
ACAGTCAACTTA | TTAC | TAATTATTTAAA | tcaa |
DNA sequence
AGAGAATCGAGGAGAATGCCTGACCCTTTAGGGTCAGGATGAATCCGACAATCGATGACACAACCCACTGTCGATAGCACGGCTTGATATTCCAACAGAT
ACTTAAGCAACCTCGTACAATTACAAGTGTAATGGTCACGGTGACTGTCACCGCGAAGTTCCACAATCCATCCCTCTCACGGCGGAAGGAGTGGCAACGC
GCCACACGTCTCTACCGTGACACCAAACAATTCTGCATCAACGGATGGGAGAACGGCAACTTCGACAAATCCGTGACCACAGCCAGCATCGATAACGACC
TCTACTCGGCCATCCAGAATCAAGCCATTCGAGAGGCGAAATCCGACCACAGCAAGGACGGAGCGGTTCGATATCAAGAGAGCCAGCCGTTCGCTATCAA
CAACCAGAACTGGGAACTCGACACAACCGAGAGCGGTACGGTCGTCGTTGGCTTCCCGTGCGTCTCTCAATGGTGGTACACGCCGATAGAGGTGTACGAC
GACATTGACGACCACGTAGACCGACTGGTCGAAGGAAACGCTAAGAAGACCCGACTACAGGTCTACCGGCGTGGCGACGACTGGTACTGTACGTTCAACA
TCGAGTACGACACCGACACGTCGGGTGAGACACCCATCGGTGTCGATATTGGTGAACGCCACATTCTCGCCGCGACGGCCTACGACGAAGACGAGTCAAT
GCTGGTGTCTGGTGGTGAGGCGAAGTACGTTCGACGCAAATATCGTTCCCTACGCGATTCGCTATCGGAAGCGGGTGCGCTTCGCGCACGTAACCGTGTG
GGTGACAAAGAACAGCGTCGAATTAACGACCTAAATCATAAACTCTCCCGTCGTCTCATCACGTTCGCGGAACAGTTCGAGAATCCCGTCATTCGGATGG
AGGACCTCGAAGGTATCCGCGAGAACAGTTCGTGGTCGGGTGTCCATTCGTGGCATTTCCACCAACTCCAACAGTTCATCACCTACAAAGCCGAACGCGT
TGGTATTCGTGTCGAGAAAGTTGACGCTTATCATACCAGCCAGCAATGTTCGGCGTGCGGTTCAATGGGAACCCGTGATGGCGACCAATTTTCGTGTGCG
GAGTGCGGTCGTGGACGCCACGCCGACTTGAACGCTTCGGAGAATATTGCACAACGGGAGGGTGAACCATGCACGGCCTAACACTTCAGGTGAGGCGAAC
CGTGCTACCTCGCTGGCTGAACAACCAGCCGTCGTTGACGCCCGCTGTATGCGGGGAGGAAGGCCGTTTTGACACGGCTCTACGCGCTGTAACGCACACC
GCCGGTCACAATTCGGTGGCAACCTTCGACGGGTCACGCGAAAGCGTACTTGTACCCCGAGGAAACGCGCAACCCGAATATCCACTTCGTGGATTCCCGC
GTCTTTAGGCGCGGGAGGATGTCAA
ACTTAAGCAACCTCGTACAATTACAAGTGTAATGGTCACGGTGACTGTCACCGCGAAGTTCCACAATCCATCCCTCTCACGGCGGAAGGAGTGGCAACGC
GCCACACGTCTCTACCGTGACACCAAACAATTCTGCATCAACGGATGGGAGAACGGCAACTTCGACAAATCCGTGACCACAGCCAGCATCGATAACGACC
TCTACTCGGCCATCCAGAATCAAGCCATTCGAGAGGCGAAATCCGACCACAGCAAGGACGGAGCGGTTCGATATCAAGAGAGCCAGCCGTTCGCTATCAA
CAACCAGAACTGGGAACTCGACACAACCGAGAGCGGTACGGTCGTCGTTGGCTTCCCGTGCGTCTCTCAATGGTGGTACACGCCGATAGAGGTGTACGAC
GACATTGACGACCACGTAGACCGACTGGTCGAAGGAAACGCTAAGAAGACCCGACTACAGGTCTACCGGCGTGGCGACGACTGGTACTGTACGTTCAACA
TCGAGTACGACACCGACACGTCGGGTGAGACACCCATCGGTGTCGATATTGGTGAACGCCACATTCTCGCCGCGACGGCCTACGACGAAGACGAGTCAAT
GCTGGTGTCTGGTGGTGAGGCGAAGTACGTTCGACGCAAATATCGTTCCCTACGCGATTCGCTATCGGAAGCGGGTGCGCTTCGCGCACGTAACCGTGTG
GGTGACAAAGAACAGCGTCGAATTAACGACCTAAATCATAAACTCTCCCGTCGTCTCATCACGTTCGCGGAACAGTTCGAGAATCCCGTCATTCGGATGG
AGGACCTCGAAGGTATCCGCGAGAACAGTTCGTGGTCGGGTGTCCATTCGTGGCATTTCCACCAACTCCAACAGTTCATCACCTACAAAGCCGAACGCGT
TGGTATTCGTGTCGAGAAAGTTGACGCTTATCATACCAGCCAGCAATGTTCGGCGTGCGGTTCAATGGGAACCCGTGATGGCGACCAATTTTCGTGTGCG
GAGTGCGGTCGTGGACGCCACGCCGACTTGAACGCTTCGGAGAATATTGCACAACGGGAGGGTGAACCATGCACGGCCTAACACTTCAGGTGAGGCGAAC
CGTGCTACCTCGCTGGCTGAACAACCAGCCGTCGTTGACGCCCGCTGTATGCGGGGAGGAAGGCCGTTTTGACACGGCTCTACGCGCTGTAACGCACACC
GCCGGTCACAATTCGGTGGCAACCTTCGACGGGTCACGCGAAAGCGTACTTGTACCCCGAGGAAACGCGCAACCCGAATATCCACTTCGTGGATTCCCGC
GTCTTTAGGCGCGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1050 bp | 349 aa | 132 | 1181 | + | No |
AG : TnpB
ORF sequence :
MVTVTVTAKFHNPSLSRRKEWQRATRLYRDTKQFCINGWENGNFDKSVTTASIDNDLYSAIQNQAIREAKSDHSKDGAVRYQESQPFAINNQNWELDTTE
SGTVVVGFPCVSQWWYTPIEVYDDIDDHVDRLVEGNAKKTRLQVYRRGDDWYCTFNIEYDTDTSGETPIGVDIGERHILAATAYDEDESMLVSGGEAKYV
RRKYRSLRDSLSEAGALRARNRVGDKEQRRINDLNHKLSRRLITFAEQFENPVIRMEDLEGIRENSSWSGVHSWHFHQLQQFITYKAERVGIRVEKVDAY
HTSQQCSACGSMGTRDGDQFSCAECGRGRHADLNASENIAQREGEPCTA
SGTVVVGFPCVSQWWYTPIEVYDDIDDHVDRLVEGNAKKTRLQVYRRGDDWYCTFNIEYDTDTSGETPIGVDIGERHILAATAYDEDESMLVSGGEAKYV
RRKYRSLRDSLSEAGALRARNRVGDKEQRRINDLNHKLSRRLITFAEQFENPVIRMEDLEGIRENSSWSGVHSWHFHQLQQFITYKAERVGIRVEKVDAY
HTSQQCSACGSMGTRDGDQFSCAECGRGRHADLNASENIAQREGEPCTA
Blast result :
Comments
ISHli4 is 52% (TnpB) aa similar to ISClte2.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.
2] M. Dyall-Smith et al, in preparation.