ISHli4

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halohasta litchfieldiae
Halohasta litchfieldiae
DNA section
IS Length : 1425 bp

Ends


Left end : AGAGAATCGAGGAGAATGCCTGACCCTTTAGGGTCAGGATGAATCCGACAATCGATGACACAACCCACTGTCGATAGCACGGCTTGATATTCCAACAGAT II struct. : No
Right end : TCGACGGGTCACGCGAAAGCGTACTTGTACCCCGAGGAAACGCGCAACCCGAATATCCACTTCGTGGATTCCCGCGTCTTTAGGCGCGGGAGGATGTCAA II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ACAGTCAACTTATTACTAATTATTTAAAtcaa

DNA sequence

AGAGAATCGAGGAGAATGCCTGACCCTTTAGGGTCAGGATGAATCCGACAATCGATGACACAACCCACTGTCGATAGCACGGCTTGATATTCCAACAGAT
ACTTAAGCAACCTCGTACAATTACAAGTGTAATGGTCACGGTGACTGTCACCGCGAAGTTCCACAATCCATCCCTCTCACGGCGGAAGGAGTGGCAACGC
GCCACACGTCTCTACCGTGACACCAAACAATTCTGCATCAACGGATGGGAGAACGGCAACTTCGACAAATCCGTGACCACAGCCAGCATCGATAACGACC
TCTACTCGGCCATCCAGAATCAAGCCATTCGAGAGGCGAAATCCGACCACAGCAAGGACGGAGCGGTTCGATATCAAGAGAGCCAGCCGTTCGCTATCAA
CAACCAGAACTGGGAACTCGACACAACCGAGAGCGGTACGGTCGTCGTTGGCTTCCCGTGCGTCTCTCAATGGTGGTACACGCCGATAGAGGTGTACGAC
GACATTGACGACCACGTAGACCGACTGGTCGAAGGAAACGCTAAGAAGACCCGACTACAGGTCTACCGGCGTGGCGACGACTGGTACTGTACGTTCAACA
TCGAGTACGACACCGACACGTCGGGTGAGACACCCATCGGTGTCGATATTGGTGAACGCCACATTCTCGCCGCGACGGCCTACGACGAAGACGAGTCAAT
GCTGGTGTCTGGTGGTGAGGCGAAGTACGTTCGACGCAAATATCGTTCCCTACGCGATTCGCTATCGGAAGCGGGTGCGCTTCGCGCACGTAACCGTGTG
GGTGACAAAGAACAGCGTCGAATTAACGACCTAAATCATAAACTCTCCCGTCGTCTCATCACGTTCGCGGAACAGTTCGAGAATCCCGTCATTCGGATGG
AGGACCTCGAAGGTATCCGCGAGAACAGTTCGTGGTCGGGTGTCCATTCGTGGCATTTCCACCAACTCCAACAGTTCATCACCTACAAAGCCGAACGCGT
TGGTATTCGTGTCGAGAAAGTTGACGCTTATCATACCAGCCAGCAATGTTCGGCGTGCGGTTCAATGGGAACCCGTGATGGCGACCAATTTTCGTGTGCG
GAGTGCGGTCGTGGACGCCACGCCGACTTGAACGCTTCGGAGAATATTGCACAACGGGAGGGTGAACCATGCACGGCCTAACACTTCAGGTGAGGCGAAC
CGTGCTACCTCGCTGGCTGAACAACCAGCCGTCGTTGACGCCCGCTGTATGCGGGGAGGAAGGCCGTTTTGACACGGCTCTACGCGCTGTAACGCACACC
GCCGGTCACAATTCGGTGGCAACCTTCGACGGGTCACGCGAAAGCGTACTTGTACCCCGAGGAAACGCGCAACCCGAATATCCACTTCGTGGATTCCCGC
GTCTTTAGGCGCGGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1050 bp349 aa1321181+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MVTVTVTAKFHNPSLSRRKEWQRATRLYRDTKQFCINGWENGNFDKSVTTASIDNDLYSAIQNQAIREAKSDHSKDGAVRYQESQPFAINNQNWELDTTE
SGTVVVGFPCVSQWWYTPIEVYDDIDDHVDRLVEGNAKKTRLQVYRRGDDWYCTFNIEYDTDTSGETPIGVDIGERHILAATAYDEDESMLVSGGEAKYV
RRKYRSLRDSLSEAGALRARNRVGDKEQRRINDLNHKLSRRLITFAEQFENPVIRMEDLEGIRENSSWSGVHSWHFHQLQQFITYKAERVGIRVEKVDAY
HTSQQCSACGSMGTRDGDQFSCAECGRGRHADLNASENIAQREGEPCTA

 

Blast result :
Comments
ISHli4 is 52% (TnpB) aa similar to ISClte2.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.