ISHli12
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halohasta litchfieldiae | Halohasta litchfieldiae |
DNA section
IS Length : 1388 bp
Ends
Left end : TTTATACTGGTTAGCGAGGCGAATACCCCGACCCACCGTGGTCGGGGATGAAGCCGACAACTCGTGATACAAATCATTAAGTGAACACATCTGTAATCAA II struct. : Yes
Right end : TGGTTTCCAGCGTGTGTCTGCAAGTCACGTCTTAGAAACAGGAAGTCTGCCCTCGTGAGAGCAGGATTCCCCGCGCCACCGTGCGCGGGGTAACATTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GTCAGCCGCGTTT | TTAT | ACGTTGTTCTGG | tcaa |
DNA sequence
TTTATACTGGTTAGCGAGGCGAATACCCCGACCCACCGTGGTCGGGGATGAAGCCGACAACTCGTGATACAAATCATTAAGTGAACACATCTGTAATCAA
GAGACAGAGATGGAATACAGTCACCGCTACCACGCTTACCCAACACAAGAGGTAGCGGCTGAACTGGAACAACATATAGACGTTCATCGCCAGCTCTACA
ACCACGTCCGATGGGACTACACGAACAGTCCCGAGGACGACAAACCGAGTGAGTACGACCAGAACAACAAACTTCCTGAGTGGAAACGAACGTGGTCAGT
GTTCAGTGAAATGCACTCGAAGGCCGCACAAGCCACCGTCGCTCGCTTCCACCGCAACCTCTCAAACCTTCGTAAAAAGAAAGAGAAAGGATACAACGTT
GGTCGGCTCAAACGGCAAGCACCCACTGAATACCGGAGCGTGACGTACAACCAGTCTGGTTTCGACCTCGATGAAAAGAGGGGCCACGACAAGTACGCCT
ACGTTCGATTCAGCAAAATCGGCTGGGTGAAAATCCGGTATTCGCGCCCACTTCCTGACCGCGCCAACATCAAAGAGGTCACGTTCAAGAAGGAGACAAC
CGGTGAATGGTTCGTCTCCTTCGGACTGGAAACCGACGACGCCAACCTACCCGAGAAACCCAACGTTGATTCACTTGATACAAGCAACAGCGTCGGGATT
GACCTCGGCATCCAGAACTACATCCACACCACCGATGGCAAAACCGTGGATTGGCTTGACCTTGAAGACGATTACGAGCGTCTGCGCCGCGAACAACGCA
AATTGTCTAGCAAGGAGAAAGGCTCGAACAACTACGAGAAACAACGAGTCGAAGTTGCTAACGTCAAACGCCATATTCGTCGGAAGGTGCTGGACTACCA
GCACAAGATTACGACGTGGCTCGTCCGTGAGTACGACGCCGTGTTCGTAGAAGACCTGAACGTCCAAAGTATGCTTCAGGGCGACGGGAACGCTTGCAAC
AAGCAGGATGCGGCGTGGAGACAGTTCATCACCCTCCTCGAATACAAAGGCGACCTGTACGGCTGTCACGTCAAACAGGTCGAAGCAAGAGGGACGACGA
AAGAATGCGCGTCGTGTGGTGTGGAGACCCCGAAGCCTATCTGGGTCAGGGAACATTTGTGTCCGTCGTGTGGGTTCAAGACGGACAGGGACGCAAACGC
GGCGATGAACGTCTTGCAGAGAGGGTTTTCTGAGTTAGGGTTGGGATGGCCCGAATCAACGCCTGTGGAGACTGTGACCGCTACGGACACCGCTGGTTTC
CAGCGTGTGTCTGCAAGTCACGTCTTAGAAACAGGAAGTCTGCCCTCGTGAGAGCAGGATTCCCCGCGCCACCGTGCGCGGGGTAACATTCAA
GAGACAGAGATGGAATACAGTCACCGCTACCACGCTTACCCAACACAAGAGGTAGCGGCTGAACTGGAACAACATATAGACGTTCATCGCCAGCTCTACA
ACCACGTCCGATGGGACTACACGAACAGTCCCGAGGACGACAAACCGAGTGAGTACGACCAGAACAACAAACTTCCTGAGTGGAAACGAACGTGGTCAGT
GTTCAGTGAAATGCACTCGAAGGCCGCACAAGCCACCGTCGCTCGCTTCCACCGCAACCTCTCAAACCTTCGTAAAAAGAAAGAGAAAGGATACAACGTT
GGTCGGCTCAAACGGCAAGCACCCACTGAATACCGGAGCGTGACGTACAACCAGTCTGGTTTCGACCTCGATGAAAAGAGGGGCCACGACAAGTACGCCT
ACGTTCGATTCAGCAAAATCGGCTGGGTGAAAATCCGGTATTCGCGCCCACTTCCTGACCGCGCCAACATCAAAGAGGTCACGTTCAAGAAGGAGACAAC
CGGTGAATGGTTCGTCTCCTTCGGACTGGAAACCGACGACGCCAACCTACCCGAGAAACCCAACGTTGATTCACTTGATACAAGCAACAGCGTCGGGATT
GACCTCGGCATCCAGAACTACATCCACACCACCGATGGCAAAACCGTGGATTGGCTTGACCTTGAAGACGATTACGAGCGTCTGCGCCGCGAACAACGCA
AATTGTCTAGCAAGGAGAAAGGCTCGAACAACTACGAGAAACAACGAGTCGAAGTTGCTAACGTCAAACGCCATATTCGTCGGAAGGTGCTGGACTACCA
GCACAAGATTACGACGTGGCTCGTCCGTGAGTACGACGCCGTGTTCGTAGAAGACCTGAACGTCCAAAGTATGCTTCAGGGCGACGGGAACGCTTGCAAC
AAGCAGGATGCGGCGTGGAGACAGTTCATCACCCTCCTCGAATACAAAGGCGACCTGTACGGCTGTCACGTCAAACAGGTCGAAGCAAGAGGGACGACGA
AAGAATGCGCGTCGTGTGGTGTGGAGACCCCGAAGCCTATCTGGGTCAGGGAACATTTGTGTCCGTCGTGTGGGTTCAAGACGGACAGGGACGCAAACGC
GGCGATGAACGTCTTGCAGAGAGGGTTTTCTGAGTTAGGGTTGGGATGGCCCGAATCAACGCCTGTGGAGACTGTGACCGCTACGGACACCGCTGGTTTC
CAGCGTGTGTCTGCAAGTCACGTCTTAGAAACAGGAAGTCTGCCCTCGTGAGAGCAGGATTCCCCGCGCCACCGTGCGCGGGGTAACATTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1242 bp | 413 aa | 105 | 1346 | + | No |
AG : TnpB
ORF sequence :
MEYSHRYHAYPTQEVAAELEQHIDVHRQLYNHVRWDYTNSPEDDKPSEYDQNNKLPEWKRTWSVFSEMHSKAAQATVARFHRNLSNLRKKKEKGYNVGRL
KRQAPTEYRSVTYNQSGFDLDEKRGHDKYAYVRFSKIGWVKIRYSRPLPDRANIKEVTFKKETTGEWFVSFGLETDDANLPEKPNVDSLDTSNSVGIDLG
IQNYIHTTDGKTVDWLDLEDDYERLRREQRKLSSKEKGSNNYEKQRVEVANVKRHIRRKVLDYQHKITTWLVREYDAVFVEDLNVQSMLQGDGNACNKQD
AAWRQFITLLEYKGDLYGCHVKQVEARGTTKECASCGVETPKPIWVREHLCPSCGFKTDRDANAAMNVLQRGFSELGLGWPESTPVETVTATDTAGFQRV
SASHVLETGSLPS
KRQAPTEYRSVTYNQSGFDLDEKRGHDKYAYVRFSKIGWVKIRYSRPLPDRANIKEVTFKKETTGEWFVSFGLETDDANLPEKPNVDSLDTSNSVGIDLG
IQNYIHTTDGKTVDWLDLEDDYERLRREQRKLSSKEKGSNNYEKQRVEVANVKRHIRRKVLDYQHKITTWLVREYDAVFVEDLNVQSMLQGDGNACNKQD
AAWRQFITLLEYKGDLYGCHVKQVEARGTTKECASCGVETPKPIWVREHLCPSCGFKTDRDANAAMNVLQRGFSELGLGWPESTPVETVTATDTAGFQRV
SASHVLETGSLPS
Blast result :
Comments
ISHli12 is 92% (TnpB) aa similar to ISNph10.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.
2] M. Dyall-Smith et al, in preparation.