ISHli12

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halohasta litchfieldiae
Halohasta litchfieldiae
DNA section
IS Length : 1388 bp

Ends


Left end : TTTATACTGGTTAGCGAGGCGAATACCCCGACCCACCGTGGTCGGGGATGAAGCCGACAACTCGTGATACAAATCATTAAGTGAACACATCTGTAATCAA II struct. : Yes
Right end : TGGTTTCCAGCGTGTGTCTGCAAGTCACGTCTTAGAAACAGGAAGTCTGCCCTCGTGAGAGCAGGATTCCCCGCGCCACCGTGCGCGGGGTAACATTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GTCAGCCGCGTTTTTATACGTTGTTCTGGtcaa

DNA sequence

TTTATACTGGTTAGCGAGGCGAATACCCCGACCCACCGTGGTCGGGGATGAAGCCGACAACTCGTGATACAAATCATTAAGTGAACACATCTGTAATCAA
GAGACAGAGATGGAATACAGTCACCGCTACCACGCTTACCCAACACAAGAGGTAGCGGCTGAACTGGAACAACATATAGACGTTCATCGCCAGCTCTACA
ACCACGTCCGATGGGACTACACGAACAGTCCCGAGGACGACAAACCGAGTGAGTACGACCAGAACAACAAACTTCCTGAGTGGAAACGAACGTGGTCAGT
GTTCAGTGAAATGCACTCGAAGGCCGCACAAGCCACCGTCGCTCGCTTCCACCGCAACCTCTCAAACCTTCGTAAAAAGAAAGAGAAAGGATACAACGTT
GGTCGGCTCAAACGGCAAGCACCCACTGAATACCGGAGCGTGACGTACAACCAGTCTGGTTTCGACCTCGATGAAAAGAGGGGCCACGACAAGTACGCCT
ACGTTCGATTCAGCAAAATCGGCTGGGTGAAAATCCGGTATTCGCGCCCACTTCCTGACCGCGCCAACATCAAAGAGGTCACGTTCAAGAAGGAGACAAC
CGGTGAATGGTTCGTCTCCTTCGGACTGGAAACCGACGACGCCAACCTACCCGAGAAACCCAACGTTGATTCACTTGATACAAGCAACAGCGTCGGGATT
GACCTCGGCATCCAGAACTACATCCACACCACCGATGGCAAAACCGTGGATTGGCTTGACCTTGAAGACGATTACGAGCGTCTGCGCCGCGAACAACGCA
AATTGTCTAGCAAGGAGAAAGGCTCGAACAACTACGAGAAACAACGAGTCGAAGTTGCTAACGTCAAACGCCATATTCGTCGGAAGGTGCTGGACTACCA
GCACAAGATTACGACGTGGCTCGTCCGTGAGTACGACGCCGTGTTCGTAGAAGACCTGAACGTCCAAAGTATGCTTCAGGGCGACGGGAACGCTTGCAAC
AAGCAGGATGCGGCGTGGAGACAGTTCATCACCCTCCTCGAATACAAAGGCGACCTGTACGGCTGTCACGTCAAACAGGTCGAAGCAAGAGGGACGACGA
AAGAATGCGCGTCGTGTGGTGTGGAGACCCCGAAGCCTATCTGGGTCAGGGAACATTTGTGTCCGTCGTGTGGGTTCAAGACGGACAGGGACGCAAACGC
GGCGATGAACGTCTTGCAGAGAGGGTTTTCTGAGTTAGGGTTGGGATGGCCCGAATCAACGCCTGTGGAGACTGTGACCGCTACGGACACCGCTGGTTTC
CAGCGTGTGTCTGCAAGTCACGTCTTAGAAACAGGAAGTCTGCCCTCGTGAGAGCAGGATTCCCCGCGCCACCGTGCGCGGGGTAACATTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1242 bp413 aa1051346+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEYSHRYHAYPTQEVAAELEQHIDVHRQLYNHVRWDYTNSPEDDKPSEYDQNNKLPEWKRTWSVFSEMHSKAAQATVARFHRNLSNLRKKKEKGYNVGRL
KRQAPTEYRSVTYNQSGFDLDEKRGHDKYAYVRFSKIGWVKIRYSRPLPDRANIKEVTFKKETTGEWFVSFGLETDDANLPEKPNVDSLDTSNSVGIDLG
IQNYIHTTDGKTVDWLDLEDDYERLRREQRKLSSKEKGSNNYEKQRVEVANVKRHIRRKVLDYQHKITTWLVREYDAVFVEDLNVQSMLQGDGNACNKQD
AAWRQFITLLEYKGDLYGCHVKQVEARGTTKECASCGVETPKPIWVREHLCPSCGFKTDRDANAAMNVLQRGFSELGLGWPESTPVETVTATDTAGFQRV
SASHVLETGSLPS

 

Blast result :
Comments
ISHli12 is 92% (TnpB) aa similar to ISNph10.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.