ISHli11

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halohasta litchfieldiae
Halohasta litchfieldiae
DNA section
IS Length : 1832 bp

Ends


Left end : CTGAATACAGGTGCTAAGCCCCCTTCCTCAGCGAGTGCCGTAGGCGCGAGCAGGGAGGGGATACAGTGCCGTCATCATCTGTTCGTACACTGTTCTGTTG II struct. : Yes
Right end : AACCACTACGGTTCCTGCAAAGCGCGTCTTGGAAGCAGGAAGCCCTACCCTCAAGGAGCCAACGGTGTCAGCCGTAGGCGAGTAGGGTAGGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CGGACGCAGTGATTAGTTCGCCACTCGATCAC

DNA sequence

CTGAATACAGGTGCTAAGCCCCCTTCCTCAGCGAGTGCCGTAGGCGCGAGCAGGGAGGGGATACAGTGCCGTCATCATCTGTTCGTACACTGTTCTGTTG
AAATCCCACAGACCCACGCAACCGCAATGTTCTTTGATTGGGGTGGCCTCTTATTGAGTGAACCCAATAGAATACGACCTCGATTCAGGTTCGCATTCGA
TGTATTCGCTCCACTACCACCTGATACTCACCACGAAGTATCGGCGCGGAGTGCTAACCGAGGAGCGAACCCAATTCATTCACGAGATCATCTGCGGGTT
CGCGGACAATTACGGTGTCGAACTGACCAACCTCGACGGCGAGGACGACCACGTACACATCCTGTTTCGAGCGAAACCCACCACAGACCTCGTGAAGTTC
ATCAACACAGTCAAGGGCGCGACCGCCCGCCGTATCCGAAATGAGTACGCAGACGAACTGAAAACCGACCTGTGGGGTGACTCGTTCTGGAACGATTCGT
ACTGCCTCATCTCAACGGGTCAGGTGTCGCTGGATATGCTGAAACAGTACGTCGATAATCAACGCGAGTAGAATGTACTACGCCTACAAGTATCGGCTTG
AGCCGTCCGACGCCCACCGCGAGGAGTTAGACCGCCACCGCGATATTTGTCGGCAACTGTACAACCACACGCTCTACCGCCTCAACGAGTACCAAGACGA
ACACGACGAACTACCCTCCATGACCACGCTTCGGTCGGAGCTCCCCGACCTCAAACAGTGGTGGGACAGCCTCTCGGACGTCTACTCGAAGGTTCTCCAA
ACTGTTGTAGAACGTCTGTTCGATAACCTCAAAGGTCTCTCCAAGCTCAAGGACAAGGGCTACGGCGTCGGTCAACTCAAGTGGAAGCCGCCACGGGAGT
TCCGCAGTTTCACCTACAGTCAGTCTGGCTTCAAGCTCGACAAGAAGGGCGGTCAGACTGTGCTGTCTCTCTCGAAACTCGCGGACATACCGATACGGCT
CCACCGCGCCATCCCCGACGATGCGAAACTCAAGCAAGTCACCGTCAAGAAGGAACCGACGGGAGAGTGGTTCGCCACCTTCGGTGTCCAAATGGACCGT
GAACCTCCTGAGCCACCAGAGAATCCCAAGAAGTGCGTCGGCATCGATGTGGGGATTCTCACGTACGCCCACGACACCGACGGAACGGCGGTCGGGTCGC
TCGACCTTTTGGACGAACGCGAGCGGTTGAAGCGGGAGCAACGGAAACTCTCGCGCAAACAGCACGGATCGAACAACTACGAGAAGCAACGACGTCAGGT
TGCGGAGTGTCATGCCGACCTCCGACGAAAACGCCGCGACTTCCTGCACAAACTTTCTGCCTACTACGCTCGGGAGTACGACCTCGTGGCGGTCGAAGAC
CTGAACGTCAAGGGGATGATCGAATCACCGTCGAACAGCCGCAACACGGCGTCTGCCGCGTGGCGGACGTTCCTCTCGCTACTTGAGTACAAGTGCGAGC
GCGAAGGAACGCACTTCGTGGCGGTCAACCCGAGAGGGACTACCAAGGAATGCGCGTCTTGCGGCGTTTCGACGGACAAGCCGTTGTGGGTCCGTGAACA
CTCCTGTCCCGCCTGCGGGTTTGAGGCGGACAGGGACGCGAATGCGGCGTGGAACATCCTTTCTCGCGGTGCAAAACACATAGGAGTGGGACGCTCCGAA
TCAACGTCTGTGGAGACTGCGTTCCCTACGGGAACCACTACGGTTCCTGCAAAGCGCGTCTTGGAAGCAGGAAGCCCTACCCTCAAGGAGCCAACGGTGT
CAGCCGTAGGCGAGTAGGGTAGGGTAGTTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
414 bp137 aa158571+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MNPIEYDLDSGSHSMYSLHYHLILTTKYRRGVLTEERTQFIHEIICGFADNYGVELTNLDGEDDHVHILFRAKPTTDLVKFINTVKGATARRIRNEYADE
LKTDLWGDSFWNDSYCLISTGQVSLDMLKQYVDNQRE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1245 bp414 aa5731817+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MYYAYKYRLEPSDAHREELDRHRDICRQLYNHTLYRLNEYQDEHDELPSMTTLRSELPDLKQWWDSLSDVYSKVLQTVVERLFDNLKGLSKLKDKGYGVG
QLKWKPPREFRSFTYSQSGFKLDKKGGQTVLSLSKLADIPIRLHRAIPDDAKLKQVTVKKEPTGEWFATFGVQMDREPPEPPENPKKCVGIDVGILTYAH
DTDGTAVGSLDLLDERERLKREQRKLSRKQHGSNNYEKQRRQVAECHADLRRKRRDFLHKLSAYYAREYDLVAVEDLNVKGMIESPSNSRNTASAAWRTF
LSLLEYKCEREGTHFVAVNPRGTTKECASCGVSTDKPLWVREHSCPACGFEADRDANAAWNILSRGAKHIGVGRSESTSVETAFPTGTTTVPAKRVLEAG
SPTLKEPTVSAVGE

 

Blast result :
Comments
ISHli11 is 97% (ORFA : the transposase) and 94% (ORFB) aa similar to ISHma12.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.