ISHli11
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halohasta litchfieldiae | Halohasta litchfieldiae |
DNA section
IS Length : 1832 bp
Ends
Left end : CTGAATACAGGTGCTAAGCCCCCTTCCTCAGCGAGTGCCGTAGGCGCGAGCAGGGAGGGGATACAGTGCCGTCATCATCTGTTCGTACACTGTTCTGTTG II struct. : Yes
Right end : AACCACTACGGTTCCTGCAAAGCGCGTCTTGGAAGCAGGAAGCCCTACCCTCAAGGAGCCAACGGTGTCAGCCGTAGGCGAGTAGGGTAGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CGGACGCAGTGA | TTAG | TTCGCCACTCGA | TCAC |
DNA sequence
CTGAATACAGGTGCTAAGCCCCCTTCCTCAGCGAGTGCCGTAGGCGCGAGCAGGGAGGGGATACAGTGCCGTCATCATCTGTTCGTACACTGTTCTGTTG
AAATCCCACAGACCCACGCAACCGCAATGTTCTTTGATTGGGGTGGCCTCTTATTGAGTGAACCCAATAGAATACGACCTCGATTCAGGTTCGCATTCGA
TGTATTCGCTCCACTACCACCTGATACTCACCACGAAGTATCGGCGCGGAGTGCTAACCGAGGAGCGAACCCAATTCATTCACGAGATCATCTGCGGGTT
CGCGGACAATTACGGTGTCGAACTGACCAACCTCGACGGCGAGGACGACCACGTACACATCCTGTTTCGAGCGAAACCCACCACAGACCTCGTGAAGTTC
ATCAACACAGTCAAGGGCGCGACCGCCCGCCGTATCCGAAATGAGTACGCAGACGAACTGAAAACCGACCTGTGGGGTGACTCGTTCTGGAACGATTCGT
ACTGCCTCATCTCAACGGGTCAGGTGTCGCTGGATATGCTGAAACAGTACGTCGATAATCAACGCGAGTAGAATGTACTACGCCTACAAGTATCGGCTTG
AGCCGTCCGACGCCCACCGCGAGGAGTTAGACCGCCACCGCGATATTTGTCGGCAACTGTACAACCACACGCTCTACCGCCTCAACGAGTACCAAGACGA
ACACGACGAACTACCCTCCATGACCACGCTTCGGTCGGAGCTCCCCGACCTCAAACAGTGGTGGGACAGCCTCTCGGACGTCTACTCGAAGGTTCTCCAA
ACTGTTGTAGAACGTCTGTTCGATAACCTCAAAGGTCTCTCCAAGCTCAAGGACAAGGGCTACGGCGTCGGTCAACTCAAGTGGAAGCCGCCACGGGAGT
TCCGCAGTTTCACCTACAGTCAGTCTGGCTTCAAGCTCGACAAGAAGGGCGGTCAGACTGTGCTGTCTCTCTCGAAACTCGCGGACATACCGATACGGCT
CCACCGCGCCATCCCCGACGATGCGAAACTCAAGCAAGTCACCGTCAAGAAGGAACCGACGGGAGAGTGGTTCGCCACCTTCGGTGTCCAAATGGACCGT
GAACCTCCTGAGCCACCAGAGAATCCCAAGAAGTGCGTCGGCATCGATGTGGGGATTCTCACGTACGCCCACGACACCGACGGAACGGCGGTCGGGTCGC
TCGACCTTTTGGACGAACGCGAGCGGTTGAAGCGGGAGCAACGGAAACTCTCGCGCAAACAGCACGGATCGAACAACTACGAGAAGCAACGACGTCAGGT
TGCGGAGTGTCATGCCGACCTCCGACGAAAACGCCGCGACTTCCTGCACAAACTTTCTGCCTACTACGCTCGGGAGTACGACCTCGTGGCGGTCGAAGAC
CTGAACGTCAAGGGGATGATCGAATCACCGTCGAACAGCCGCAACACGGCGTCTGCCGCGTGGCGGACGTTCCTCTCGCTACTTGAGTACAAGTGCGAGC
GCGAAGGAACGCACTTCGTGGCGGTCAACCCGAGAGGGACTACCAAGGAATGCGCGTCTTGCGGCGTTTCGACGGACAAGCCGTTGTGGGTCCGTGAACA
CTCCTGTCCCGCCTGCGGGTTTGAGGCGGACAGGGACGCGAATGCGGCGTGGAACATCCTTTCTCGCGGTGCAAAACACATAGGAGTGGGACGCTCCGAA
TCAACGTCTGTGGAGACTGCGTTCCCTACGGGAACCACTACGGTTCCTGCAAAGCGCGTCTTGGAAGCAGGAAGCCCTACCCTCAAGGAGCCAACGGTGT
CAGCCGTAGGCGAGTAGGGTAGGGTAGTTCAC
AAATCCCACAGACCCACGCAACCGCAATGTTCTTTGATTGGGGTGGCCTCTTATTGAGTGAACCCAATAGAATACGACCTCGATTCAGGTTCGCATTCGA
TGTATTCGCTCCACTACCACCTGATACTCACCACGAAGTATCGGCGCGGAGTGCTAACCGAGGAGCGAACCCAATTCATTCACGAGATCATCTGCGGGTT
CGCGGACAATTACGGTGTCGAACTGACCAACCTCGACGGCGAGGACGACCACGTACACATCCTGTTTCGAGCGAAACCCACCACAGACCTCGTGAAGTTC
ATCAACACAGTCAAGGGCGCGACCGCCCGCCGTATCCGAAATGAGTACGCAGACGAACTGAAAACCGACCTGTGGGGTGACTCGTTCTGGAACGATTCGT
ACTGCCTCATCTCAACGGGTCAGGTGTCGCTGGATATGCTGAAACAGTACGTCGATAATCAACGCGAGTAGAATGTACTACGCCTACAAGTATCGGCTTG
AGCCGTCCGACGCCCACCGCGAGGAGTTAGACCGCCACCGCGATATTTGTCGGCAACTGTACAACCACACGCTCTACCGCCTCAACGAGTACCAAGACGA
ACACGACGAACTACCCTCCATGACCACGCTTCGGTCGGAGCTCCCCGACCTCAAACAGTGGTGGGACAGCCTCTCGGACGTCTACTCGAAGGTTCTCCAA
ACTGTTGTAGAACGTCTGTTCGATAACCTCAAAGGTCTCTCCAAGCTCAAGGACAAGGGCTACGGCGTCGGTCAACTCAAGTGGAAGCCGCCACGGGAGT
TCCGCAGTTTCACCTACAGTCAGTCTGGCTTCAAGCTCGACAAGAAGGGCGGTCAGACTGTGCTGTCTCTCTCGAAACTCGCGGACATACCGATACGGCT
CCACCGCGCCATCCCCGACGATGCGAAACTCAAGCAAGTCACCGTCAAGAAGGAACCGACGGGAGAGTGGTTCGCCACCTTCGGTGTCCAAATGGACCGT
GAACCTCCTGAGCCACCAGAGAATCCCAAGAAGTGCGTCGGCATCGATGTGGGGATTCTCACGTACGCCCACGACACCGACGGAACGGCGGTCGGGTCGC
TCGACCTTTTGGACGAACGCGAGCGGTTGAAGCGGGAGCAACGGAAACTCTCGCGCAAACAGCACGGATCGAACAACTACGAGAAGCAACGACGTCAGGT
TGCGGAGTGTCATGCCGACCTCCGACGAAAACGCCGCGACTTCCTGCACAAACTTTCTGCCTACTACGCTCGGGAGTACGACCTCGTGGCGGTCGAAGAC
CTGAACGTCAAGGGGATGATCGAATCACCGTCGAACAGCCGCAACACGGCGTCTGCCGCGTGGCGGACGTTCCTCTCGCTACTTGAGTACAAGTGCGAGC
GCGAAGGAACGCACTTCGTGGCGGTCAACCCGAGAGGGACTACCAAGGAATGCGCGTCTTGCGGCGTTTCGACGGACAAGCCGTTGTGGGTCCGTGAACA
CTCCTGTCCCGCCTGCGGGTTTGAGGCGGACAGGGACGCGAATGCGGCGTGGAACATCCTTTCTCGCGGTGCAAAACACATAGGAGTGGGACGCTCCGAA
TCAACGTCTGTGGAGACTGCGTTCCCTACGGGAACCACTACGGTTCCTGCAAAGCGCGTCTTGGAAGCAGGAAGCCCTACCCTCAAGGAGCCAACGGTGT
CAGCCGTAGGCGAGTAGGGTAGGGTAGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
414 bp | 137 aa | 158 | 571 | + | No |
Chemistry : Y1
ORF sequence :
MNPIEYDLDSGSHSMYSLHYHLILTTKYRRGVLTEERTQFIHEIICGFADNYGVELTNLDGEDDHVHILFRAKPTTDLVKFINTVKGATARRIRNEYADE
LKTDLWGDSFWNDSYCLISTGQVSLDMLKQYVDNQRE
LKTDLWGDSFWNDSYCLISTGQVSLDMLKQYVDNQRE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1245 bp | 414 aa | 573 | 1817 | + | No |
AG : TnpB
ORF sequence :
MYYAYKYRLEPSDAHREELDRHRDICRQLYNHTLYRLNEYQDEHDELPSMTTLRSELPDLKQWWDSLSDVYSKVLQTVVERLFDNLKGLSKLKDKGYGVG
QLKWKPPREFRSFTYSQSGFKLDKKGGQTVLSLSKLADIPIRLHRAIPDDAKLKQVTVKKEPTGEWFATFGVQMDREPPEPPENPKKCVGIDVGILTYAH
DTDGTAVGSLDLLDERERLKREQRKLSRKQHGSNNYEKQRRQVAECHADLRRKRRDFLHKLSAYYAREYDLVAVEDLNVKGMIESPSNSRNTASAAWRTF
LSLLEYKCEREGTHFVAVNPRGTTKECASCGVSTDKPLWVREHSCPACGFEADRDANAAWNILSRGAKHIGVGRSESTSVETAFPTGTTTVPAKRVLEAG
SPTLKEPTVSAVGE
QLKWKPPREFRSFTYSQSGFKLDKKGGQTVLSLSKLADIPIRLHRAIPDDAKLKQVTVKKEPTGEWFATFGVQMDREPPEPPENPKKCVGIDVGILTYAH
DTDGTAVGSLDLLDERERLKREQRKLSRKQHGSNNYEKQRRQVAECHADLRRKRRDFLHKLSAYYAREYDLVAVEDLNVKGMIESPSNSRNTASAAWRTF
LSLLEYKCEREGTHFVAVNPRGTTKECASCGVSTDKPLWVREHSCPACGFEADRDANAAWNILSRGAKHIGVGRSESTSVETAFPTGTTTVPAKRVLEAG
SPTLKEPTVSAVGE
Blast result :
Comments
ISHli11 is 97% (ORFA : the transposase) and 94% (ORFB) aa similar to ISHma12.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.
2] M. Dyall-Smith et al, in preparation.