ISHli5

  • Family ISH3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halohasta litchfieldiae
Halohasta litchfieldiae
DNA section
IS Length : 1377 bp

Ends


IR Length : 15

IRL : CAGTCGATCACATCGGGTTAGAGGAAGTGTCTGCTTGGACGTAATGTGAT
IRR : CAGTCGATCACATCGAGAACCTCACAACCTCCTCCAGTAGGTGCTGAATC

Insertion site


Left flankDirect repeatRight flankDR Length
GTTTCTTTATGTCTAGTGAGTGAG0

DNA sequence

CAGTCGATCACATCGGGTTAGAGGAAGTGTCTGCTTGGACGTAATGTGATAGCTCACCAAGCAGACAACCAGATCGAAGAAGAGCATCTGCTTAATTTTG
TCGTCAACAGCCTCAACGAAGATCTTCCGATAGACCTCACAGACGGTGTGAGGGTCTCGACAGAGGAACTCTACGAGGTCCTCGCTGGCGCCAGCGCCAG
CGGGACCTCGATCAATCACATCTGCGAGACGACCGAAGACTCTCCACACGCCAATACCGTCCGTGGACACCTTACCGATCAGTTTGACCTCGATACTGTC
GAGCAAGTTGGAGACACGCTGCTCCAACAGGAAACCATTGATGCACTTCCTGATCGACCGGTGGAGGTCGTCGCCGACCTCCACCTCGATCCCTACTACG
GCGATGAAGACGAGACAGTAGCTCTCTACTCTTCGCTGGCTAAGCGTGGAACGACGACCTTTCACGCCTATGCGACACTGTACGCACGGGTGCGCAACAA
ACGATACACGCTAGCGGTTCGCCAGCTGGTCGCTGGCGAAACCTCAAGTGATGTCCTCAGTGAGTTCTTCGAACTGCTTGACGGCCTTGACCTGGGCGTC
AAGGCCGTCTACCTTGATCGGGGTTTCTACAATAGCACCTGTATAGGGTTGTTGTACGCCTACAATTACGCCTACGTCATACCGGTCGTCAAATGGGGTG
ATACTATCAAAGACGAACTCAGCAGCGGTTGGAGCCGTGTAATCGAGCACGAGCTAGCTGGGAAGGTGACGTTCCCTGTGTACATCGATTGCGTCTACCA
GCAAGGTAGATACGATGAAAATGGGGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTTATCGAGACTCCGCGCGATGCCCGAGAATACTACCGCAAG
CGGTTCGGTATCGAATCATCCTACCGGTTGGCTAGGCAGAGTCTCGCTCTTACGAGCTCTCGTGACGCCGGATTACGGCTGTTGCTGTTTGTCGTGAGCC
TGTTGTTACAGAACGTTTGGCGCTATCTCCACTGGATGTACGTGGCGGCGCCCCGCCGCGGGGGGCGCCGCCTCTTGGAGTGGCCGTTCACAGAGTTCTG
TGAGATGGTACTCCGTGCTGCCTGGACAGCACTCGGAGTTCGTCGAGCCGTTCCAGCGAACCAACCGCTCGACAGCCGGTTCTTCCGGTAGTTGCCCCTG
GATTAGGGCAGCGTTAGTGAGTGGCAACACCGTCGCGTCGGCGGCTGATCGCCGCCGACAGCGACTGGGTACCGGTAGAACTCACGATCACCGTCTTGCT
GAAGACTAGCCAGCTACCGCAGACACAGATTCAGCACCTACTGGAGGAGGTTGTGAGGTTCTCGATGTGATCGACTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1146 bp381 aa461191+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIAHQADNQIEEEHLLNFVVNSLNEDLPIDLTDGVRVSTEELYEVLAGASASGTSINHICETTEDSPHANTVRGHLTDQFDLDTVEQVGDTLLQQETIDA
LPDRPVEVVADLHLDPYYGDEDETVALYSSLAKRGTTTFHAYATLYARVRNKRYTLAVRQLVAGETSSDVLSEFFELLDGLDLGVKAVYLDRGFYNSTCI
GLLYAYNYAYVIPVVKWGDTIKDELSSGWSRVIEHELAGKVTFPVYIDCVYQQGRYDENGVARHGYAADAPFIETPRDAREYYRKRFGIESSYRLARQSL
ALTSSRDAGLRLLLFVVSLLLQNVWRYLHWMYVAAPRRGGRRLLEWPFTEFCEMVLRAAWTALGVRRAVPANQPLDSRFFR

 

Blast result :
Comments
ISHli5 is 93% aa similar to ISH20A.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.