ISHli5
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halohasta litchfieldiae | Halohasta litchfieldiae |
DNA section
IS Length : 1377 bp
Ends
IR Length : 15
IRL : CAGTCGATCACATCGGGTTAGAGGAAGTGTCTGCTTGGACGTAATGTGAT
IRR : CAGTCGATCACATCGAGAACCTCACAACCTCCTCCAGTAGGTGCTGAATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTTCTTTATGT | CTAGTGAGTGAG | 0 |
DNA sequence
CAGTCGATCACATCGGGTTAGAGGAAGTGTCTGCTTGGACGTAATGTGATAGCTCACCAAGCAGACAACCAGATCGAAGAAGAGCATCTGCTTAATTTTG
TCGTCAACAGCCTCAACGAAGATCTTCCGATAGACCTCACAGACGGTGTGAGGGTCTCGACAGAGGAACTCTACGAGGTCCTCGCTGGCGCCAGCGCCAG
CGGGACCTCGATCAATCACATCTGCGAGACGACCGAAGACTCTCCACACGCCAATACCGTCCGTGGACACCTTACCGATCAGTTTGACCTCGATACTGTC
GAGCAAGTTGGAGACACGCTGCTCCAACAGGAAACCATTGATGCACTTCCTGATCGACCGGTGGAGGTCGTCGCCGACCTCCACCTCGATCCCTACTACG
GCGATGAAGACGAGACAGTAGCTCTCTACTCTTCGCTGGCTAAGCGTGGAACGACGACCTTTCACGCCTATGCGACACTGTACGCACGGGTGCGCAACAA
ACGATACACGCTAGCGGTTCGCCAGCTGGTCGCTGGCGAAACCTCAAGTGATGTCCTCAGTGAGTTCTTCGAACTGCTTGACGGCCTTGACCTGGGCGTC
AAGGCCGTCTACCTTGATCGGGGTTTCTACAATAGCACCTGTATAGGGTTGTTGTACGCCTACAATTACGCCTACGTCATACCGGTCGTCAAATGGGGTG
ATACTATCAAAGACGAACTCAGCAGCGGTTGGAGCCGTGTAATCGAGCACGAGCTAGCTGGGAAGGTGACGTTCCCTGTGTACATCGATTGCGTCTACCA
GCAAGGTAGATACGATGAAAATGGGGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTTATCGAGACTCCGCGCGATGCCCGAGAATACTACCGCAAG
CGGTTCGGTATCGAATCATCCTACCGGTTGGCTAGGCAGAGTCTCGCTCTTACGAGCTCTCGTGACGCCGGATTACGGCTGTTGCTGTTTGTCGTGAGCC
TGTTGTTACAGAACGTTTGGCGCTATCTCCACTGGATGTACGTGGCGGCGCCCCGCCGCGGGGGGCGCCGCCTCTTGGAGTGGCCGTTCACAGAGTTCTG
TGAGATGGTACTCCGTGCTGCCTGGACAGCACTCGGAGTTCGTCGAGCCGTTCCAGCGAACCAACCGCTCGACAGCCGGTTCTTCCGGTAGTTGCCCCTG
GATTAGGGCAGCGTTAGTGAGTGGCAACACCGTCGCGTCGGCGGCTGATCGCCGCCGACAGCGACTGGGTACCGGTAGAACTCACGATCACCGTCTTGCT
GAAGACTAGCCAGCTACCGCAGACACAGATTCAGCACCTACTGGAGGAGGTTGTGAGGTTCTCGATGTGATCGACTG
TCGTCAACAGCCTCAACGAAGATCTTCCGATAGACCTCACAGACGGTGTGAGGGTCTCGACAGAGGAACTCTACGAGGTCCTCGCTGGCGCCAGCGCCAG
CGGGACCTCGATCAATCACATCTGCGAGACGACCGAAGACTCTCCACACGCCAATACCGTCCGTGGACACCTTACCGATCAGTTTGACCTCGATACTGTC
GAGCAAGTTGGAGACACGCTGCTCCAACAGGAAACCATTGATGCACTTCCTGATCGACCGGTGGAGGTCGTCGCCGACCTCCACCTCGATCCCTACTACG
GCGATGAAGACGAGACAGTAGCTCTCTACTCTTCGCTGGCTAAGCGTGGAACGACGACCTTTCACGCCTATGCGACACTGTACGCACGGGTGCGCAACAA
ACGATACACGCTAGCGGTTCGCCAGCTGGTCGCTGGCGAAACCTCAAGTGATGTCCTCAGTGAGTTCTTCGAACTGCTTGACGGCCTTGACCTGGGCGTC
AAGGCCGTCTACCTTGATCGGGGTTTCTACAATAGCACCTGTATAGGGTTGTTGTACGCCTACAATTACGCCTACGTCATACCGGTCGTCAAATGGGGTG
ATACTATCAAAGACGAACTCAGCAGCGGTTGGAGCCGTGTAATCGAGCACGAGCTAGCTGGGAAGGTGACGTTCCCTGTGTACATCGATTGCGTCTACCA
GCAAGGTAGATACGATGAAAATGGGGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTTATCGAGACTCCGCGCGATGCCCGAGAATACTACCGCAAG
CGGTTCGGTATCGAATCATCCTACCGGTTGGCTAGGCAGAGTCTCGCTCTTACGAGCTCTCGTGACGCCGGATTACGGCTGTTGCTGTTTGTCGTGAGCC
TGTTGTTACAGAACGTTTGGCGCTATCTCCACTGGATGTACGTGGCGGCGCCCCGCCGCGGGGGGCGCCGCCTCTTGGAGTGGCCGTTCACAGAGTTCTG
TGAGATGGTACTCCGTGCTGCCTGGACAGCACTCGGAGTTCGTCGAGCCGTTCCAGCGAACCAACCGCTCGACAGCCGGTTCTTCCGGTAGTTGCCCCTG
GATTAGGGCAGCGTTAGTGAGTGGCAACACCGTCGCGTCGGCGGCTGATCGCCGCCGACAGCGACTGGGTACCGGTAGAACTCACGATCACCGTCTTGCT
GAAGACTAGCCAGCTACCGCAGACACAGATTCAGCACCTACTGGAGGAGGTTGTGAGGTTCTCGATGTGATCGACTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1146 bp | 381 aa | 46 | 1191 | + | No |
Chemistry : DDE
ORF sequence :
MIAHQADNQIEEEHLLNFVVNSLNEDLPIDLTDGVRVSTEELYEVLAGASASGTSINHICETTEDSPHANTVRGHLTDQFDLDTVEQVGDTLLQQETIDA
LPDRPVEVVADLHLDPYYGDEDETVALYSSLAKRGTTTFHAYATLYARVRNKRYTLAVRQLVAGETSSDVLSEFFELLDGLDLGVKAVYLDRGFYNSTCI
GLLYAYNYAYVIPVVKWGDTIKDELSSGWSRVIEHELAGKVTFPVYIDCVYQQGRYDENGVARHGYAADAPFIETPRDAREYYRKRFGIESSYRLARQSL
ALTSSRDAGLRLLLFVVSLLLQNVWRYLHWMYVAAPRRGGRRLLEWPFTEFCEMVLRAAWTALGVRRAVPANQPLDSRFFR
LPDRPVEVVADLHLDPYYGDEDETVALYSSLAKRGTTTFHAYATLYARVRNKRYTLAVRQLVAGETSSDVLSEFFELLDGLDLGVKAVYLDRGFYNSTCI
GLLYAYNYAYVIPVVKWGDTIKDELSSGWSRVIEHELAGKVTFPVYIDCVYQQGRYDENGVARHGYAADAPFIETPRDAREYYRKRFGIESSYRLARQSL
ALTSSRDAGLRLLLFVVSLLLQNVWRYLHWMYVAAPRRGGRRLLEWPFTEFCEMVLRAAWTALGVRRAVPANQPLDSRFFR
Blast result :
Comments
ISHli5 is 93% aa similar to ISH20A.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.
2] M. Dyall-Smith et al, in preparation.