ISHli2
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halohasta litchfieldiae | Halohasta litchfieldiae |
DNA section
IS Length : 937 bp
Ends
IR Length : 23/26
IRL : GGCTCTGGTGAATCGCCACACTGCGTCGGGATAGGTCGTCAGTTCAAAGG
IRR : GGCTCTGGTGAATCGCCAGAAGGCGTTTGATTTCACGGTTTCACGGCTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACCAAGAACTTG | ATCTCAAC | GGGTTCCAAGCC | 8 |
GTTCGTCTGAAA | GTTGATAGAGAA | 0 |
DNA sequence
GGCTCTGGTGAATCGCCACACTGCGTCGGGATAGGTCGTCAGTTCAAAGGAGTTGAAGCGGGAGACTGTCGATGCCTATGTCGAAGATCTCCCGCTTCAC
GAGCAAGGCGGTGTCGTTAGCTAAAAATGCTGTTGGTGGCCGAGGCGAAGCCGCCGCCCCCGAAGGGGGTGGGGGCTTCGCCGACTACGCCGTCGTTTCG
CTTCACTGTCTCCGGATTTACCTAGAGAAATCCTACCGCGAGGCGCTCGATCTCTTGAGCGAGATGCCACATATTTTGGCCGAAATCGGCCTCGAAGAGG
GCGATCTCCCGCATCACTCGACGCTAGTAAAGTCGTTTGACAGGTTACAGATGAAGATCTGGCGAGTGCTGCTGCGCCTTTCGGCGCAGCTGCACGACAC
CGCGGATCACGCCGCGATGGACGCGACGTTCTTCGACCGTGAAACCGCCAGCAAGCACTACTGCCGCCGCACGAATTACCGCGTTCAAACACTGAAAACG
ACCGCTCTCGTCGATACACAAACACAAGCTGTACTCAACGTTCACTGTACGACCGAGAAACGTCACGACACGCAGATCGGCTGGCAACTCGCCCGCCGCA
ACGCGGGCGAGATTGCCAGCCTCGCCGCCGACAAAGGCTACGATTGGATGCAATTACGCGAGAAATTGCGCGAAGAAGGCGTGAGACCGCTGATCAAGCA
CCGTGAGTTCCGACCCGTCGATTGCGCGCATAACGCGCGCATCGATGAGTCTCTGTACGGCCAACGAGCGCTGTCTGAGACCGTCTTTTCAACGATTAAG
CGAACGCTCGGCCACGCGGTGCGTGCCCGAGCGTGGTACCGCGAATTTCGTGAGATCGTTCTGATGTGTGCGGTCTACAACATCAAGCGAGCCGTGAAAC
CGTGAAATCAAACGCCTTCTGGCGATTCACCAGAGCC
GAGCAAGGCGGTGTCGTTAGCTAAAAATGCTGTTGGTGGCCGAGGCGAAGCCGCCGCCCCCGAAGGGGGTGGGGGCTTCGCCGACTACGCCGTCGTTTCG
CTTCACTGTCTCCGGATTTACCTAGAGAAATCCTACCGCGAGGCGCTCGATCTCTTGAGCGAGATGCCACATATTTTGGCCGAAATCGGCCTCGAAGAGG
GCGATCTCCCGCATCACTCGACGCTAGTAAAGTCGTTTGACAGGTTACAGATGAAGATCTGGCGAGTGCTGCTGCGCCTTTCGGCGCAGCTGCACGACAC
CGCGGATCACGCCGCGATGGACGCGACGTTCTTCGACCGTGAAACCGCCAGCAAGCACTACTGCCGCCGCACGAATTACCGCGTTCAAACACTGAAAACG
ACCGCTCTCGTCGATACACAAACACAAGCTGTACTCAACGTTCACTGTACGACCGAGAAACGTCACGACACGCAGATCGGCTGGCAACTCGCCCGCCGCA
ACGCGGGCGAGATTGCCAGCCTCGCCGCCGACAAAGGCTACGATTGGATGCAATTACGCGAGAAATTGCGCGAAGAAGGCGTGAGACCGCTGATCAAGCA
CCGTGAGTTCCGACCCGTCGATTGCGCGCATAACGCGCGCATCGATGAGTCTCTGTACGGCCAACGAGCGCTGTCTGAGACCGTCTTTTCAACGATTAAG
CGAACGCTCGGCCACGCGGTGCGTGCCCGAGCGTGGTACCGCGAATTTCGTGAGATCGTTCTGATGTGTGCGGTCTACAACATCAAGCGAGCCGTGAAAC
CGTGAAATCAAACGCCTTCTGGCGATTCACCAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
828 bp | 275 aa | 78 | 905 | + | No |
Chemistry : DDE
ORF sequence :
MSKISRFTSKAVSLAKNAVGGRGEAAAPEGGGGFADYAVVSLHCLRIYLEKSYREALDLLSEMPHILAEIGLEEGDLPHHSTLVKSFDRLQMKIWRVLLR
LSAQLHDTADHAAMDATFFDRETASKHYCRRTNYRVQTLKTTALVDTQTQAVLNVHCTTEKRHDTQIGWQLARRNAGEIASLAADKGYDWMQLREKLREE
GVRPLIKHREFRPVDCAHNARIDESLYGQRALSETVFSTIKRTLGHAVRARAWYREFREIVLMCAVYNIKRAVKP
LSAQLHDTADHAAMDATFFDRETASKHYCRRTNYRVQTLKTTALVDTQTQAVLNVHCTTEKRHDTQIGWQLARRNAGEIASLAADKGYDWMQLREKLREE
GVRPLIKHREFRPVDCAHNARIDESLYGQRALSETVFSTIKRTLGHAVRARAWYREFREIVLMCAVYNIKRAVKP
Blast result :
Comments
ISHli2 is 93% aa similar to ISNagr1.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation
2] M. Dyall-Smith et al, in preparation