ISHli2

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halohasta litchfieldiae
Halohasta litchfieldiae
DNA section
IS Length : 937 bp

Ends


IR Length : 23/26

IRL : GGCTCTGGTGAATCGCCACACTGCGTCGGGATAGGTCGTCAGTTCAAAGG
IRR : GGCTCTGGTGAATCGCCAGAAGGCGTTTGATTTCACGGTTTCACGGCTCG

Insertion site


Left flankDirect repeatRight flankDR Length
ACCAAGAACTTGATCTCAACGGGTTCCAAGCC8
GTTCGTCTGAAAGTTGATAGAGAA0

DNA sequence

GGCTCTGGTGAATCGCCACACTGCGTCGGGATAGGTCGTCAGTTCAAAGGAGTTGAAGCGGGAGACTGTCGATGCCTATGTCGAAGATCTCCCGCTTCAC
GAGCAAGGCGGTGTCGTTAGCTAAAAATGCTGTTGGTGGCCGAGGCGAAGCCGCCGCCCCCGAAGGGGGTGGGGGCTTCGCCGACTACGCCGTCGTTTCG
CTTCACTGTCTCCGGATTTACCTAGAGAAATCCTACCGCGAGGCGCTCGATCTCTTGAGCGAGATGCCACATATTTTGGCCGAAATCGGCCTCGAAGAGG
GCGATCTCCCGCATCACTCGACGCTAGTAAAGTCGTTTGACAGGTTACAGATGAAGATCTGGCGAGTGCTGCTGCGCCTTTCGGCGCAGCTGCACGACAC
CGCGGATCACGCCGCGATGGACGCGACGTTCTTCGACCGTGAAACCGCCAGCAAGCACTACTGCCGCCGCACGAATTACCGCGTTCAAACACTGAAAACG
ACCGCTCTCGTCGATACACAAACACAAGCTGTACTCAACGTTCACTGTACGACCGAGAAACGTCACGACACGCAGATCGGCTGGCAACTCGCCCGCCGCA
ACGCGGGCGAGATTGCCAGCCTCGCCGCCGACAAAGGCTACGATTGGATGCAATTACGCGAGAAATTGCGCGAAGAAGGCGTGAGACCGCTGATCAAGCA
CCGTGAGTTCCGACCCGTCGATTGCGCGCATAACGCGCGCATCGATGAGTCTCTGTACGGCCAACGAGCGCTGTCTGAGACCGTCTTTTCAACGATTAAG
CGAACGCTCGGCCACGCGGTGCGTGCCCGAGCGTGGTACCGCGAATTTCGTGAGATCGTTCTGATGTGTGCGGTCTACAACATCAAGCGAGCCGTGAAAC
CGTGAAATCAAACGCCTTCTGGCGATTCACCAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
828 bp275 aa78905+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKISRFTSKAVSLAKNAVGGRGEAAAPEGGGGFADYAVVSLHCLRIYLEKSYREALDLLSEMPHILAEIGLEEGDLPHHSTLVKSFDRLQMKIWRVLLR
LSAQLHDTADHAAMDATFFDRETASKHYCRRTNYRVQTLKTTALVDTQTQAVLNVHCTTEKRHDTQIGWQLARRNAGEIASLAADKGYDWMQLREKLREE
GVRPLIKHREFRPVDCAHNARIDESLYGQRALSETVFSTIKRTLGHAVRARAWYREFREIVLMCAVYNIKRAVKP

 

Blast result :
Comments
ISHli2 is 93% aa similar to ISNagr1.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation