ISHli1

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halohasta litchfieldiae
Halohasta litchfieldiae
DNA section
IS Length : 926 bp

Ends


IR Length : 20/22

IRL : GGCTCTGTAGTTTCGCTAGACGTAACGGCAAAAGCTCCTTTATTGCTGTA
IRR : GGCTCTGTAGTTTCGGTATACGGCGGTCGATTTCATGGAAATCGGACGCT

Insertion site


Left flankDirect repeatRight flankDR Length
CGAAGAGGTGGAGAACTAAGCACATGAGACAT8

DNA sequence

GGCTCTGTAGTTTCGCTAGACGTAACGGCAAAAGCTCCTTTATTGCTGTAGAAAGCGAAGAGACAGATCAGTTTGATATCGGAAATCCGTCTCCTCACCC
GTACTGCAGTCACGAAAGCTAAACTAGTTGTCGCTAACCCCGACGAACCCGCCGACCCCCGTGGGGGTCGCGGGTTCGCTGAATGGGCGATGCTCACGCT
CCATGCACTCCGTATCGAGCTGGGCAAATCATATCGTGGAACGATTGATTTGCTCAGCGAAATGCCCGGCATCCTCGAAGAAATTGGTCTCACAAGACTC
CCTCACTACACCGTTCTCCGCACCTGGTTTGGCCGGATCTCGATGAAGACGTGGCGTGCGTTTCTCGGCCGTTCAGCCGAGAAACGCACAGGTCACGCCT
CTATCGATGCAACAGGCTTCGACCGCGATCAGCCCAGCAGACACTACGCCAACCGCACCTCCTACCGCGTTCGTGCGTTGAAAGTCACCGCCTTGGTGGA
TGTCGAAACGCTGTACATCACCGACATCCACTGCACAACGACAAAGAAGCACGACGCAAAGATTGGCCCGCAGGTCGCCCGCAGGAATGCGGCCGACCTG
CGTTCGTTGGCTGCAGACCGTGGCTATGACTCGAAAGCCTTCAGAGACGAACTCCGTGGATACGGTGTTCGTCCCCTGATCAAGCATCGAATCTATTCTT
CGCTCGATCACGCTCACAACGCCCGCATGGACAGTGATCGGTATCACCAACGCTCGATGTCTGAAACCGTCTTCTCATCGATCAAGCGCACGCTCGGCTC
CGCCGTGCGTGCGCGAAGTTGGCACTTAGAGTTCCGAGAAATGGTGCTCAAAGCGGCTGTCTACAACCTTCGACGGAGCGTCCGATTTCCATGAAATCGA
CCGCCGTATACCGAAACTACAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
822 bp273 aa73894+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MISEIRLLTRTAVTKAKLVVANPDEPADPRGGRGFAEWAMLTLHALRIELGKSYRGTIDLLSEMPGILEEIGLTRLPHYTVLRTWFGRISMKTWRAFLGR
SAEKRTGHASIDATGFDRDQPSRHYANRTSYRVRALKVTALVDVETLYITDIHCTTTKKHDAKIGPQVARRNAADLRSLAADRGYDSKAFRDELRGYGVR
PLIKHRIYSSLDHAHNARMDSDRYHQRSMSETVFSSIKRTLGSAVRARSWHLEFREMVLKAAVYNLRRSVRFP

 

Blast result :
Comments
ISHli1 is 90% aa similar to ISHut1.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation