ISHli1
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halohasta litchfieldiae | Halohasta litchfieldiae |
DNA section
IS Length : 926 bp
Ends
IR Length : 20/22
IRL : GGCTCTGTAGTTTCGCTAGACGTAACGGCAAAAGCTCCTTTATTGCTGTA
IRR : GGCTCTGTAGTTTCGGTATACGGCGGTCGATTTCATGGAAATCGGACGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGAAGAGGTGGA | GAACTAAG | CACATGAGACAT | 8 |
DNA sequence
GGCTCTGTAGTTTCGCTAGACGTAACGGCAAAAGCTCCTTTATTGCTGTAGAAAGCGAAGAGACAGATCAGTTTGATATCGGAAATCCGTCTCCTCACCC
GTACTGCAGTCACGAAAGCTAAACTAGTTGTCGCTAACCCCGACGAACCCGCCGACCCCCGTGGGGGTCGCGGGTTCGCTGAATGGGCGATGCTCACGCT
CCATGCACTCCGTATCGAGCTGGGCAAATCATATCGTGGAACGATTGATTTGCTCAGCGAAATGCCCGGCATCCTCGAAGAAATTGGTCTCACAAGACTC
CCTCACTACACCGTTCTCCGCACCTGGTTTGGCCGGATCTCGATGAAGACGTGGCGTGCGTTTCTCGGCCGTTCAGCCGAGAAACGCACAGGTCACGCCT
CTATCGATGCAACAGGCTTCGACCGCGATCAGCCCAGCAGACACTACGCCAACCGCACCTCCTACCGCGTTCGTGCGTTGAAAGTCACCGCCTTGGTGGA
TGTCGAAACGCTGTACATCACCGACATCCACTGCACAACGACAAAGAAGCACGACGCAAAGATTGGCCCGCAGGTCGCCCGCAGGAATGCGGCCGACCTG
CGTTCGTTGGCTGCAGACCGTGGCTATGACTCGAAAGCCTTCAGAGACGAACTCCGTGGATACGGTGTTCGTCCCCTGATCAAGCATCGAATCTATTCTT
CGCTCGATCACGCTCACAACGCCCGCATGGACAGTGATCGGTATCACCAACGCTCGATGTCTGAAACCGTCTTCTCATCGATCAAGCGCACGCTCGGCTC
CGCCGTGCGTGCGCGAAGTTGGCACTTAGAGTTCCGAGAAATGGTGCTCAAAGCGGCTGTCTACAACCTTCGACGGAGCGTCCGATTTCCATGAAATCGA
CCGCCGTATACCGAAACTACAGAGCC
GTACTGCAGTCACGAAAGCTAAACTAGTTGTCGCTAACCCCGACGAACCCGCCGACCCCCGTGGGGGTCGCGGGTTCGCTGAATGGGCGATGCTCACGCT
CCATGCACTCCGTATCGAGCTGGGCAAATCATATCGTGGAACGATTGATTTGCTCAGCGAAATGCCCGGCATCCTCGAAGAAATTGGTCTCACAAGACTC
CCTCACTACACCGTTCTCCGCACCTGGTTTGGCCGGATCTCGATGAAGACGTGGCGTGCGTTTCTCGGCCGTTCAGCCGAGAAACGCACAGGTCACGCCT
CTATCGATGCAACAGGCTTCGACCGCGATCAGCCCAGCAGACACTACGCCAACCGCACCTCCTACCGCGTTCGTGCGTTGAAAGTCACCGCCTTGGTGGA
TGTCGAAACGCTGTACATCACCGACATCCACTGCACAACGACAAAGAAGCACGACGCAAAGATTGGCCCGCAGGTCGCCCGCAGGAATGCGGCCGACCTG
CGTTCGTTGGCTGCAGACCGTGGCTATGACTCGAAAGCCTTCAGAGACGAACTCCGTGGATACGGTGTTCGTCCCCTGATCAAGCATCGAATCTATTCTT
CGCTCGATCACGCTCACAACGCCCGCATGGACAGTGATCGGTATCACCAACGCTCGATGTCTGAAACCGTCTTCTCATCGATCAAGCGCACGCTCGGCTC
CGCCGTGCGTGCGCGAAGTTGGCACTTAGAGTTCCGAGAAATGGTGCTCAAAGCGGCTGTCTACAACCTTCGACGGAGCGTCCGATTTCCATGAAATCGA
CCGCCGTATACCGAAACTACAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
822 bp | 273 aa | 73 | 894 | + | No |
Chemistry : DDE
ORF sequence :
MISEIRLLTRTAVTKAKLVVANPDEPADPRGGRGFAEWAMLTLHALRIELGKSYRGTIDLLSEMPGILEEIGLTRLPHYTVLRTWFGRISMKTWRAFLGR
SAEKRTGHASIDATGFDRDQPSRHYANRTSYRVRALKVTALVDVETLYITDIHCTTTKKHDAKIGPQVARRNAADLRSLAADRGYDSKAFRDELRGYGVR
PLIKHRIYSSLDHAHNARMDSDRYHQRSMSETVFSSIKRTLGSAVRARSWHLEFREMVLKAAVYNLRRSVRFP
SAEKRTGHASIDATGFDRDQPSRHYANRTSYRVRALKVTALVDVETLYITDIHCTTTKKHDAKIGPQVARRNAADLRSLAADRGYDSKAFRDELRGYGVR
PLIKHRIYSSLDHAHNARMDSDRYHQRSMSETVFSSIKRTLGSAVRARSWHLEFREMVLKAAVYNLRRSVRFP
Blast result :
Comments
ISHli1 is 90% aa similar to ISHut1.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation
2] M. Dyall-Smith et al, in preparation