ISHla13
- Family IS6
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP001366 | ND | Halorubrum lacusprofundi | Halorubrum lacusprofundi ATCC 49239 |
DNA section
IS Length : 745 bp
Ends
IR Length : 14/15
IRL : GGCACTGTCTAGTTAAGCCAATTTGAGATGTGAGCAGTTCGTGGTTTGAG
IRR : GGTACTGTCTAGTTAGCGACCTCCTCAGCTGGCGTTCGATCATCTAGCGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAGACATATACT | GAAAATCCCTAT | 0 |
DNA sequence
GGCACTGTCTAGTTAAGCCAATTTGAGATGTGAGCAGTTCGTGGTTTGAGTTGTTGATGCTATCCCCAGAACTGCTCAGAGAGTCGTTAGACACGGCAAA
TCTTGAATGTTGGGAGCGAGAGCGGACGGCGACGCCCGTCAGGGCGTTCGCCGTCCGGCTCCACGCGACCGGTTGTTCGCTCAGAGAAACACAAGCAATT
CTGCGATTATTCGGCGTCCAACGCTCTCACCAGGCGATCTTTCAGTGGGTACATCGAGTAGCTGACAGCGTTCCCGACCCGCCTGAGGCGCAGCCGAAGC
GGGTCGCTGTAGACGAGACCGCTGTCAAAATTAATGGCGAGTGGTCTTGGTTGTATGCTGCAATAGACCTCGACACCAAGTTGATTTTAGGTGTCGATCT
GTTCGGATCTCACGGTACCGATCCAGCTGCTGCGTTTCTGCATAGACTCTCTGAGAAACACGACCTCTCCGAGGCCGTGTTTCTCGTCGATGGCTTCGGC
TATCAGACTGCCCTTGCTCGATTAGGACTCAGCGGTCGGCGTGATTATACAGACCGAAACCTGATCGAAAAATGGTTTCAAACGCTCAAAATGAGGATCG
ACCGCTTCCATAATTCGTGGGTGGGCAGTCGGTCGAGCGTTCGTAGCTGGTGTTCGCAGTTTACACATTATTATAACCGCCAGCGACCGCATCAATCGCT
AGATGATCGAACGCCAGCTGAGGAGGTCGCTAACTAGACAGTACC
TCTTGAATGTTGGGAGCGAGAGCGGACGGCGACGCCCGTCAGGGCGTTCGCCGTCCGGCTCCACGCGACCGGTTGTTCGCTCAGAGAAACACAAGCAATT
CTGCGATTATTCGGCGTCCAACGCTCTCACCAGGCGATCTTTCAGTGGGTACATCGAGTAGCTGACAGCGTTCCCGACCCGCCTGAGGCGCAGCCGAAGC
GGGTCGCTGTAGACGAGACCGCTGTCAAAATTAATGGCGAGTGGTCTTGGTTGTATGCTGCAATAGACCTCGACACCAAGTTGATTTTAGGTGTCGATCT
GTTCGGATCTCACGGTACCGATCCAGCTGCTGCGTTTCTGCATAGACTCTCTGAGAAACACGACCTCTCCGAGGCCGTGTTTCTCGTCGATGGCTTCGGC
TATCAGACTGCCCTTGCTCGATTAGGACTCAGCGGTCGGCGTGATTATACAGACCGAAACCTGATCGAAAAATGGTTTCAAACGCTCAAAATGAGGATCG
ACCGCTTCCATAATTCGTGGGTGGGCAGTCGGTCGAGCGTTCGTAGCTGGTGTTCGCAGTTTACACATTATTATAACCGCCAGCGACCGCATCAATCGCT
AGATGATCGAACGCCAGCTGAGGAGGTCGCTAACTAGACAGTACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 681 bp | 226 aa | 57 | 737 | + | No |
Chemistry : DDE
ORF sequence :
MLSPELLRESLDTANLECWERERTATPVRAFAVRLHATGCSLRETQAILRLFGVQRSHQAIFQWVHRVADSVPDPPEAQPKRVAVDETAVKINGEWSWLY
AAIDLDTKLILGVDLFGSHGTDPAAAFLHRLSEKHDLSEAVFLVDGFGYQTALARLGLSGRRDYTDRNLIEKWFQTLKMRIDRFHNSWVGSRSSVRSWCS
QFTHYYNRQRPHQSLDDRTPAEEVAN
AAIDLDTKLILGVDLFGSHGTDPAAAFLHRLSEKHDLSEAVFLVDGFGYQTALARLGLSGRRDYTDRNLIEKWFQTLKMRIDRFHNSWVGSRSSVRSWCS
QFTHYYNRQRPHQSLDDRTPAEEVAN
Blast result :
Comments
ISHla13 is 84% aa similar to ISNamo13.
References
1] F. Pfeiffer (2013) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission GenBank.