ISStu2
- Family ISAzo13
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AEJB01000361 | ND | Streptomyces turgidiscabies | Streptomyces turgidiscabies Car8 |
DNA section
IS Length : 1760 bp
Ends
IR Length : 28/29
IRL : GGGCACGTAAAGAATCAACACGTTGCTTCCCGGTCTGCCTGTCGTTGGTG
IRR : GGGCCCGTAAAGAATCAACACGTTGCTGCGGTCTCTGCAGTGAGGGTCAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGTTCACTAA | TTAGCTACTT | 0 |
DNA sequence
GGGCACGTAAAGAATCAACACGTTGCTTCCCGGTCTGCCTGTCGTTGGTGTGGTATGCCCATACCGAACGAGGTTCGTGACCAACTTGCCCTGAAGCTTG
GGGTGTTGTTACCTCATCTGAATGAGCGGCAGCAGCGGCTGGCGCTGGCCGCCGAGGCCCGGCTGCTGGGCCACGGCGGGGTCCGGGCCGTCGCCCAATC
CGCAGGGGTGAGCGAGACGACGGTGCGCAAGGGGGTCTTCGAGCTGGAGGGCGGTGAGGACCCATTGCCCGATGGCCGGGTGCGCCGGGCCGGCGGCGGT
CGCAAGAGCGCCGAGGAGCTTGACCCGCTGCTCGTTCCAGCTCTGCTGGCGCTGGTCGAGCCGGATGAGCGGGGCGATCCGATGTCGCCGCTGCGGTGGA
CGACCAGGTCGCTGCGGTCTCTGGCCGGGGAGCTGACGAGCCAGGGCCATGCCGCCTCGGCGCCGACCGTGGGCAGGCTGCTGCGGGAGAACGGTTTCAG
TCTGCAGGCCAATGCCAAGACCCTTGAGGGCGCTCAACACCCCGACCGGGATGCGCAGTTCCGGTACATCAACGGCCAGGTCAAGGACCATCAGGCGGAC
GGCGAGCCGGTGGTCAGTGTGGACACGAAAAAGAAGGAAGTCGTCGGGGAGTTCAAGAACGCGGGACGTCAATGGCGGCCGGCCGGTGAGCCCGTGCGGG
TTGACGTCCATGACTTCCCCGGTGATGCACTGGGCAAGGCCCTGCCCTACGGCATCTACGACCTGGCGGCGAACACCGGATGGGTGAACGTCGGTACGGA
TCACGACACCGCAGCCTTCGCGGTCGAATCGATCAACAGTTGGTGGAACGGGCAAGGACGCCTCGATTATCCGCAGGCCAGACGTCTGCTGATCACTGCC
GATGCCGGCGGCTCCAACGGCTATCGCACCCGGGCCTTCAAGACCGAGCTGGCTGCGTTCGCCGCCCGGACCGGCCTGGCCGTCACGGTCTGCCACATGC
CGCCAGGCACATCGAAGTGGAACAAGGTGGAGCATCGGCTGTTCTCCGGGATCACCATGAACTGGCGCGGCAGACCGCTGAACAGCCACGAGGTCGTCGT
GCAGTCCATCGCCGCGACCACCACCCGCACCGGTCTCACCGTCCACGCGGAACTCGACACCGGCGCCTATCCCATCGGTGTGAAGGTCAGCGATGCGGAG
CTAAACGCAGTGCCGGTCACCGGACATGCCTTTCAGGGCAGCTGGAACTGCACCGTGCACCCTCACCCCGCCAGCCCGGCAGGCCCCACCGGACCAACAC
TCGGGCCGACGGCGGTCTTCGACCGCGGAGCTCTGTCACATCCCGCGCTGACCGGCATGACCTGCACCGCACTGACCGAGCTGACTGAGACCCTGACCGT
CGACTGGCAGACGCTGCAGAAACAGGACCCCGCCGCCCGACGCGACGGCGGCGAGCGACGCCGGGCCCCGGGCGGCGGCCGCAAAGCCAAACTCGACCTG
GCCGACCGGGTCCTGGTCACCGTGCTGCACCAAAACCTCGCCCTGCCGCCTACCGTGCTGGCCCACCTCTTCGCCGTCAGCAAGGACACCATCCGCCACA
CCACCAGCGAGATCCGGCGGCTGATGGACCAGCACGCACACACACTCCGGCCCCCAGCAGCACACCTCAACACCGTGGCCGGACTCCTCGTCCACGCCGC
CGCACACGGCGTGACCCTCACTGCAGAGACCGCAGCAACGTGTTGATTCTTTACGGGCCC
GGGTGTTGTTACCTCATCTGAATGAGCGGCAGCAGCGGCTGGCGCTGGCCGCCGAGGCCCGGCTGCTGGGCCACGGCGGGGTCCGGGCCGTCGCCCAATC
CGCAGGGGTGAGCGAGACGACGGTGCGCAAGGGGGTCTTCGAGCTGGAGGGCGGTGAGGACCCATTGCCCGATGGCCGGGTGCGCCGGGCCGGCGGCGGT
CGCAAGAGCGCCGAGGAGCTTGACCCGCTGCTCGTTCCAGCTCTGCTGGCGCTGGTCGAGCCGGATGAGCGGGGCGATCCGATGTCGCCGCTGCGGTGGA
CGACCAGGTCGCTGCGGTCTCTGGCCGGGGAGCTGACGAGCCAGGGCCATGCCGCCTCGGCGCCGACCGTGGGCAGGCTGCTGCGGGAGAACGGTTTCAG
TCTGCAGGCCAATGCCAAGACCCTTGAGGGCGCTCAACACCCCGACCGGGATGCGCAGTTCCGGTACATCAACGGCCAGGTCAAGGACCATCAGGCGGAC
GGCGAGCCGGTGGTCAGTGTGGACACGAAAAAGAAGGAAGTCGTCGGGGAGTTCAAGAACGCGGGACGTCAATGGCGGCCGGCCGGTGAGCCCGTGCGGG
TTGACGTCCATGACTTCCCCGGTGATGCACTGGGCAAGGCCCTGCCCTACGGCATCTACGACCTGGCGGCGAACACCGGATGGGTGAACGTCGGTACGGA
TCACGACACCGCAGCCTTCGCGGTCGAATCGATCAACAGTTGGTGGAACGGGCAAGGACGCCTCGATTATCCGCAGGCCAGACGTCTGCTGATCACTGCC
GATGCCGGCGGCTCCAACGGCTATCGCACCCGGGCCTTCAAGACCGAGCTGGCTGCGTTCGCCGCCCGGACCGGCCTGGCCGTCACGGTCTGCCACATGC
CGCCAGGCACATCGAAGTGGAACAAGGTGGAGCATCGGCTGTTCTCCGGGATCACCATGAACTGGCGCGGCAGACCGCTGAACAGCCACGAGGTCGTCGT
GCAGTCCATCGCCGCGACCACCACCCGCACCGGTCTCACCGTCCACGCGGAACTCGACACCGGCGCCTATCCCATCGGTGTGAAGGTCAGCGATGCGGAG
CTAAACGCAGTGCCGGTCACCGGACATGCCTTTCAGGGCAGCTGGAACTGCACCGTGCACCCTCACCCCGCCAGCCCGGCAGGCCCCACCGGACCAACAC
TCGGGCCGACGGCGGTCTTCGACCGCGGAGCTCTGTCACATCCCGCGCTGACCGGCATGACCTGCACCGCACTGACCGAGCTGACTGAGACCCTGACCGT
CGACTGGCAGACGCTGCAGAAACAGGACCCCGCCGCCCGACGCGACGGCGGCGAGCGACGCCGGGCCCCGGGCGGCGGCCGCAAAGCCAAACTCGACCTG
GCCGACCGGGTCCTGGTCACCGTGCTGCACCAAAACCTCGCCCTGCCGCCTACCGTGCTGGCCCACCTCTTCGCCGTCAGCAAGGACACCATCCGCCACA
CCACCAGCGAGATCCGGCGGCTGATGGACCAGCACGCACACACACTCCGGCCCCCAGCAGCACACCTCAACACCGTGGCCGGACTCCTCGTCCACGCCGC
CGCACACGGCGTGACCCTCACTGCAGAGACCGCAGCAACGTGTTGATTCTTTACGGGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1692 bp | 563 aa | 55 | 1746 | + | No |
Chemistry : Unknow
ORF sequence :
MPIPNEVRDQLALKLGVLLPHLNERQQRLALAAEARLLGHGGVRAVAQSAGVSETTVRKGVFELEGGEDPLPDGRVRRAGGGRKSAEELDPLLVPALLAL
VEPDERGDPMSPLRWTTRSLRSLAGELTSQGHAASAPTVGRLLRENGFSLQANAKTLEGAQHPDRDAQFRYINGQVKDHQADGEPVVSVDTKKKEVVGEF
KNAGRQWRPAGEPVRVDVHDFPGDALGKALPYGIYDLAANTGWVNVGTDHDTAAFAVESINSWWNGQGRLDYPQARRLLITADAGGSNGYRTRAFKTELA
AFAARTGLAVTVCHMPPGTSKWNKVEHRLFSGITMNWRGRPLNSHEVVVQSIAATTTRTGLTVHAELDTGAYPIGVKVSDAELNAVPVTGHAFQGSWNCT
VHPHPASPAGPTGPTLGPTAVFDRGALSHPALTGMTCTALTELTETLTVDWQTLQKQDPAARRDGGERRRAPGGGRKAKLDLADRVLVTVLHQNLALPPT
VLAHLFAVSKDTIRHTTSEIRRLMDQHAHTLRPPAAHLNTVAGLLVHAAAHGVTLTAETAATC
VEPDERGDPMSPLRWTTRSLRSLAGELTSQGHAASAPTVGRLLRENGFSLQANAKTLEGAQHPDRDAQFRYINGQVKDHQADGEPVVSVDTKKKEVVGEF
KNAGRQWRPAGEPVRVDVHDFPGDALGKALPYGIYDLAANTGWVNVGTDHDTAAFAVESINSWWNGQGRLDYPQARRLLITADAGGSNGYRTRAFKTELA
AFAARTGLAVTVCHMPPGTSKWNKVEHRLFSGITMNWRGRPLNSHEVVVQSIAATTTRTGLTVHAELDTGAYPIGVKVSDAELNAVPVTGHAFQGSWNCT
VHPHPASPAGPTGPTLGPTAVFDRGALSHPALTGMTCTALTELTETLTVDWQTLQKQDPAARRDGGERRRAPGGGRKAKLDLADRVLVTVLHQNLALPPT
VLAHLFAVSKDTIRHTTSEIRRLMDQHAHTLRPPAAHLNTVAGLLVHAAAHGVTLTAETAATC
Blast result :
Comments
ISStu2 is 73% aa similar to ISStsp1.
References
1] ISfinder annotation (2013)
2] Huguet-Tapia,J.C., Badger,J.H., Loria,R. and Pettis,G.S. (2011) Plasmid 65 (2), 118-124.
2] Huguet-Tapia,J.C., Badger,J.H., Loria,R. and Pettis,G.S. (2011) Plasmid 65 (2), 118-124.