ISStu2

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AEJB01000361 ND Streptomyces turgidiscabies
Streptomyces turgidiscabies Car8
DNA section
IS Length : 1760 bp

Ends


IR Length : 28/29

IRL : GGGCACGTAAAGAATCAACACGTTGCTTCCCGGTCTGCCTGTCGTTGGTG
IRR : GGGCCCGTAAAGAATCAACACGTTGCTGCGGTCTCTGCAGTGAGGGTCAC

Insertion site


Left flankDirect repeatRight flankDR Length
CGTTCACTAATTAGCTACTT0

DNA sequence

GGGCACGTAAAGAATCAACACGTTGCTTCCCGGTCTGCCTGTCGTTGGTGTGGTATGCCCATACCGAACGAGGTTCGTGACCAACTTGCCCTGAAGCTTG
GGGTGTTGTTACCTCATCTGAATGAGCGGCAGCAGCGGCTGGCGCTGGCCGCCGAGGCCCGGCTGCTGGGCCACGGCGGGGTCCGGGCCGTCGCCCAATC
CGCAGGGGTGAGCGAGACGACGGTGCGCAAGGGGGTCTTCGAGCTGGAGGGCGGTGAGGACCCATTGCCCGATGGCCGGGTGCGCCGGGCCGGCGGCGGT
CGCAAGAGCGCCGAGGAGCTTGACCCGCTGCTCGTTCCAGCTCTGCTGGCGCTGGTCGAGCCGGATGAGCGGGGCGATCCGATGTCGCCGCTGCGGTGGA
CGACCAGGTCGCTGCGGTCTCTGGCCGGGGAGCTGACGAGCCAGGGCCATGCCGCCTCGGCGCCGACCGTGGGCAGGCTGCTGCGGGAGAACGGTTTCAG
TCTGCAGGCCAATGCCAAGACCCTTGAGGGCGCTCAACACCCCGACCGGGATGCGCAGTTCCGGTACATCAACGGCCAGGTCAAGGACCATCAGGCGGAC
GGCGAGCCGGTGGTCAGTGTGGACACGAAAAAGAAGGAAGTCGTCGGGGAGTTCAAGAACGCGGGACGTCAATGGCGGCCGGCCGGTGAGCCCGTGCGGG
TTGACGTCCATGACTTCCCCGGTGATGCACTGGGCAAGGCCCTGCCCTACGGCATCTACGACCTGGCGGCGAACACCGGATGGGTGAACGTCGGTACGGA
TCACGACACCGCAGCCTTCGCGGTCGAATCGATCAACAGTTGGTGGAACGGGCAAGGACGCCTCGATTATCCGCAGGCCAGACGTCTGCTGATCACTGCC
GATGCCGGCGGCTCCAACGGCTATCGCACCCGGGCCTTCAAGACCGAGCTGGCTGCGTTCGCCGCCCGGACCGGCCTGGCCGTCACGGTCTGCCACATGC
CGCCAGGCACATCGAAGTGGAACAAGGTGGAGCATCGGCTGTTCTCCGGGATCACCATGAACTGGCGCGGCAGACCGCTGAACAGCCACGAGGTCGTCGT
GCAGTCCATCGCCGCGACCACCACCCGCACCGGTCTCACCGTCCACGCGGAACTCGACACCGGCGCCTATCCCATCGGTGTGAAGGTCAGCGATGCGGAG
CTAAACGCAGTGCCGGTCACCGGACATGCCTTTCAGGGCAGCTGGAACTGCACCGTGCACCCTCACCCCGCCAGCCCGGCAGGCCCCACCGGACCAACAC
TCGGGCCGACGGCGGTCTTCGACCGCGGAGCTCTGTCACATCCCGCGCTGACCGGCATGACCTGCACCGCACTGACCGAGCTGACTGAGACCCTGACCGT
CGACTGGCAGACGCTGCAGAAACAGGACCCCGCCGCCCGACGCGACGGCGGCGAGCGACGCCGGGCCCCGGGCGGCGGCCGCAAAGCCAAACTCGACCTG
GCCGACCGGGTCCTGGTCACCGTGCTGCACCAAAACCTCGCCCTGCCGCCTACCGTGCTGGCCCACCTCTTCGCCGTCAGCAAGGACACCATCCGCCACA
CCACCAGCGAGATCCGGCGGCTGATGGACCAGCACGCACACACACTCCGGCCCCCAGCAGCACACCTCAACACCGTGGCCGGACTCCTCGTCCACGCCGC
CGCACACGGCGTGACCCTCACTGCAGAGACCGCAGCAACGTGTTGATTCTTTACGGGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1692 bp563 aa551746+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MPIPNEVRDQLALKLGVLLPHLNERQQRLALAAEARLLGHGGVRAVAQSAGVSETTVRKGVFELEGGEDPLPDGRVRRAGGGRKSAEELDPLLVPALLAL
VEPDERGDPMSPLRWTTRSLRSLAGELTSQGHAASAPTVGRLLRENGFSLQANAKTLEGAQHPDRDAQFRYINGQVKDHQADGEPVVSVDTKKKEVVGEF
KNAGRQWRPAGEPVRVDVHDFPGDALGKALPYGIYDLAANTGWVNVGTDHDTAAFAVESINSWWNGQGRLDYPQARRLLITADAGGSNGYRTRAFKTELA
AFAARTGLAVTVCHMPPGTSKWNKVEHRLFSGITMNWRGRPLNSHEVVVQSIAATTTRTGLTVHAELDTGAYPIGVKVSDAELNAVPVTGHAFQGSWNCT
VHPHPASPAGPTGPTLGPTAVFDRGALSHPALTGMTCTALTELTETLTVDWQTLQKQDPAARRDGGERRRAPGGGRKAKLDLADRVLVTVLHQNLALPPT
VLAHLFAVSKDTIRHTTSEIRRLMDQHAHTLRPPAAHLNTVAGLLVHAAAHGVTLTAETAATC

 

Blast result :
Comments
ISStu2 is 73% aa similar to ISStsp1.
References
1] ISfinder annotation (2013)
2] Huguet-Tapia,J.C., Badger,J.H., Loria,R. and Pettis,G.S. (2011) Plasmid 65 (2), 118-124.