ISStvi1
- Family ISAzo13
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_015957 | ND | Streptomyces violaceusniger | Streptomyces violaceusniger TU 4113 |
DNA section
IS Length : 1738 bp
Ends
IR Length : 30/35
IRL : GGGCCCGTATTTCAATAAGTGCTCGGCAGAGGGGTGTTGGTGGGAGTCTG
IRR : GGGCCCGTATTTCAATAACTGTCAGCGACGGGTTTCCGCGGGGGGTGTTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GATGCGCCCTG | CTGCGGTGCCG | 0 |
DNA sequence
GGGCCCGTATTTCAATAAGTGCTCGGCAGAGGGGTGTTGGTGGGAGTCTGAGATATGACCTCGTGTCTGTCAGGCCGCGTTGCTGCTCGTGCTCTGCGGG
CCAAGTTCGATCAGATTCTGCCGCACCTCGATGAGCGCCGCCGTCGGTTGTACCTGGCCAGTGAGGCGACGGTCCTCGGCCGCGGCGGGATCGTCCGGGT
CGCCGCCGTCTCCGGCACCAGCACTGCAACCATCGCGCGAGGCATGGCCGAGTTGGCCTCTTGCCCCCCACCGACCCTGCGGGTCCGGGCTCCAGGTGCG
GGCCGCAAGCGGCTGACAGACACCGACCCTGGTCTGCTGCCCGCGCTGGAGTCGCTGATCGAGCCGCACACCCGCGGCGACCCCGTCTCCCCGTTGCGGT
GGACCACGCTGTCGTTACGGGCCCTGGCCTCGACCCTCACCACACAGGGCCACCCGGTCAGCGCTTCAACCGTCGGACACCTGCTGCATACCCTGGGCTA
CAGCCTGCAGGGAAGCGCGAAGACAACAGAGGGCATCAGCCATCCAGACCGCGATGCCCAGTTCACCCACCTCAATGCCACCGCCGCCGCGTTCCTCAAC
GATGCCCAGCCGGTGATCAGGGTCGACACCAAGGCCAAGGAATGGCTCGGCAACCGGGACCGTCCTGGTCGCACCTGGCGCCCGGGCAAGAGCGCGATCA
AGGTGGACTGCCACACGTTCACCACCAACGACCAGCCCATGGCGATCCCCTACGGGATCTACGACATTGCCAACAACAGCGGACGGGTCAACCTCGGCAC
CGACCACGACACCGCCCAGTTCGCGGTGGAGTCCATCCGACGCTGGTGGCAACACCGCGGACGGGCGGACCACCCGAATGCCACCCGGCTCCTGATCACC
GCCGACTCCGGCGGCTCCAACGACCCCCGCCGCTGGACCTGGAAAAGCAACCTTGCCACCTTCGCAAGAGAGAGCGGTCTGGAGATCACGGTCTGTCACC
TACCGCCGGGGACTTCGAAGTGGAACAAGATAGAGCACCGGATGTTCTGCCACATCACCGCGAACTGGCGGGGGCGGCCGCTGACCAGCTACCAGGTCGT
CCTCGAGACCATCGCCGCCACAACCACCAGGACCGGCCTGACCATCGGGGCCGAACTGGACACAGGCAGCTACGACCTCGGCATCAGCGTCACACCCGCC
GAGTTCCACGCCCTTGCGATCACACCCAACACCTTCCACGGTGACTGGAACTACACACTGTCTCCCGTTCCACCGCGAGCGCCAGACGCGCCGGCAACGA
CACACCGGACCGACCCGGCCCTGACCGCGATGCTCACCGACCCGGCCCTGACCGGCATGTCACGAACCGCCTTCGAGCATCTGGTGGCGGTCTCGGAGCC
TTTTCTGGGAGGCCTTGGCCGAAGCAGCATTCCAGCGACGCTTCCACCGCCCGCGCAGCTACCGCCACCCACAGACCAGCAGCGTGGACCACACCCACCG
GCTCCTGGCAGCCATCCTCCGCCGCCGCAGAGCGGTGACCATGACGTTCCTGGCCCAACTACTGGGCGTCAACCGCACCAACCTGTCCATCCAGTACCAG
GACGCAAAACGGCTCCTGGACCTGCACCGGATCCTCATCACGCCGATACCCGGATCGCCAGCCCGCACATTGGAACAGCTACACGCCCGAACACCCCCCG
CGGAAACCCGTCGCTGACAGTTATTGAAATACGGGCCC
CCAAGTTCGATCAGATTCTGCCGCACCTCGATGAGCGCCGCCGTCGGTTGTACCTGGCCAGTGAGGCGACGGTCCTCGGCCGCGGCGGGATCGTCCGGGT
CGCCGCCGTCTCCGGCACCAGCACTGCAACCATCGCGCGAGGCATGGCCGAGTTGGCCTCTTGCCCCCCACCGACCCTGCGGGTCCGGGCTCCAGGTGCG
GGCCGCAAGCGGCTGACAGACACCGACCCTGGTCTGCTGCCCGCGCTGGAGTCGCTGATCGAGCCGCACACCCGCGGCGACCCCGTCTCCCCGTTGCGGT
GGACCACGCTGTCGTTACGGGCCCTGGCCTCGACCCTCACCACACAGGGCCACCCGGTCAGCGCTTCAACCGTCGGACACCTGCTGCATACCCTGGGCTA
CAGCCTGCAGGGAAGCGCGAAGACAACAGAGGGCATCAGCCATCCAGACCGCGATGCCCAGTTCACCCACCTCAATGCCACCGCCGCCGCGTTCCTCAAC
GATGCCCAGCCGGTGATCAGGGTCGACACCAAGGCCAAGGAATGGCTCGGCAACCGGGACCGTCCTGGTCGCACCTGGCGCCCGGGCAAGAGCGCGATCA
AGGTGGACTGCCACACGTTCACCACCAACGACCAGCCCATGGCGATCCCCTACGGGATCTACGACATTGCCAACAACAGCGGACGGGTCAACCTCGGCAC
CGACCACGACACCGCCCAGTTCGCGGTGGAGTCCATCCGACGCTGGTGGCAACACCGCGGACGGGCGGACCACCCGAATGCCACCCGGCTCCTGATCACC
GCCGACTCCGGCGGCTCCAACGACCCCCGCCGCTGGACCTGGAAAAGCAACCTTGCCACCTTCGCAAGAGAGAGCGGTCTGGAGATCACGGTCTGTCACC
TACCGCCGGGGACTTCGAAGTGGAACAAGATAGAGCACCGGATGTTCTGCCACATCACCGCGAACTGGCGGGGGCGGCCGCTGACCAGCTACCAGGTCGT
CCTCGAGACCATCGCCGCCACAACCACCAGGACCGGCCTGACCATCGGGGCCGAACTGGACACAGGCAGCTACGACCTCGGCATCAGCGTCACACCCGCC
GAGTTCCACGCCCTTGCGATCACACCCAACACCTTCCACGGTGACTGGAACTACACACTGTCTCCCGTTCCACCGCGAGCGCCAGACGCGCCGGCAACGA
CACACCGGACCGACCCGGCCCTGACCGCGATGCTCACCGACCCGGCCCTGACCGGCATGTCACGAACCGCCTTCGAGCATCTGGTGGCGGTCTCGGAGCC
TTTTCTGGGAGGCCTTGGCCGAAGCAGCATTCCAGCGACGCTTCCACCGCCCGCGCAGCTACCGCCACCCACAGACCAGCAGCGTGGACCACACCCACCG
GCTCCTGGCAGCCATCCTCCGCCGCCGCAGAGCGGTGACCATGACGTTCCTGGCCCAACTACTGGGCGTCAACCGCACCAACCTGTCCATCCAGTACCAG
GACGCAAAACGGCTCCTGGACCTGCACCGGATCCTCATCACGCCGATACCCGGATCGCCAGCCCGCACATTGGAACAGCTACACGCCCGAACACCCCCCG
CGGAAACCCGTCGCTGACAGTTATTGAAATACGGGCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1685 bp | 561 aa | 55 | 1739 | + | No |
Chemistry : Unknow
ORF sequence :
MTSCLSGRVAARALRAKFDQILPHLDERRRRLYLASEATVLGRGGIVRVAAVSGTSTATIARGMAELASCPPPTLRVRAPGAGRKRLTDTDPGLLPALES
LIEPHTRGDPVSPLRWTTLSLRALASTLTTQGHPVSASTVGHLLHTLGYSLQGSAKTTEGISHPDRDAQFTHLNATAAAFLNDAQPVIRVDTKAKEWLGN
RDRPGRTWRPGKSAIKVDCHTFTTNDQPMAIPYGIYDIANNSGRVNLGTDHDTAQFAVESIRRWWQHRGRADHPNATRLLITADSGGSNDPRRWTWKSNL
ATFARESGLEITVCHLPPGTSKWNKIEHRMFCHITANWRGRPLTSYQVVLETIAATTTRTGLTIGAELDTGSYDLGISVTPAEFHALAITPNTFHGDWNY
TLSPVPPRAPDAPATTHRTDPALTAMLTDPALTGMSRTAFEHLVAVSEPFLGGLGRSSIPATLPPPAQLPPPTDQQRGPHPPAPGSHPPPPQSGDHDVPG
PTTGRQPHQPVHPVPGRKTAPGPAPDPHHADTRIASPHIGTATRPNTPRGNPSLTVIEIRA
LIEPHTRGDPVSPLRWTTLSLRALASTLTTQGHPVSASTVGHLLHTLGYSLQGSAKTTEGISHPDRDAQFTHLNATAAAFLNDAQPVIRVDTKAKEWLGN
RDRPGRTWRPGKSAIKVDCHTFTTNDQPMAIPYGIYDIANNSGRVNLGTDHDTAQFAVESIRRWWQHRGRADHPNATRLLITADSGGSNDPRRWTWKSNL
ATFARESGLEITVCHLPPGTSKWNKIEHRMFCHITANWRGRPLTSYQVVLETIAATTTRTGLTIGAELDTGSYDLGISVTPAEFHALAITPNTFHGDWNY
TLSPVPPRAPDAPATTHRTDPALTAMLTDPALTGMSRTAFEHLVAVSEPFLGGLGRSSIPATLPPPAQLPPPTDQQRGPHPPAPGSHPPPPQSGDHDVPG
PTTGRQPHQPVHPVPGRKTAPGPAPDPHHADTRIASPHIGTATRPNTPRGNPSLTVIEIRA
Blast result :
Comments
The STOP codon is missing. The transposase end in this file is done by the end of the IS.
ISStvi1 is 60% aa similar to ISRop2.
ISStvi1 is 60% aa similar to ISRop2.
References
1] ISfinder annotation (2013)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ivanova,N., Daligault,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Hagen,A., Katz,L., Fiedler,H.-P., Keasling,J., Fortman,J. And Woyke,T. (2011) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ivanova,N., Daligault,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Hagen,A., Katz,L., Fiedler,H.-P., Keasling,J., Fortman,J. And Woyke,T. (2011) Direct submission GenBank.