ISMco6

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_015416 ND Methanosaeta concilii
Methanosaeta concilii GP6
DNA section
IS Length : 1306 bp

Ends


IR Length : 20/27

IRL : GTTGTTGACGCAAAATAAAATAGACAACTTTATATTGTAGAACATCGTTT
IRR : GGGCTTGACGCTAAATAATATATTCAATTTCTCGCTATTTTGATGTAGTT

Insertion site


Left flankDirect repeatRight flankDR Length
TTGTTTTAACTAAGAAGCTAATC3
CAAAAGTAGCTAAGATCAGTAAG3
TACTCGCAACCAAGCTGCCGCTT3
TGTGTTTTACTAAGATCTTGTTA3

DNA sequence

GTTGTTGACGCAAAATAAAATAGACAACTTTATATTGTAGAACATCGTTTATATATTATGGAAAGCGAAGTAGACTATGAACCATTCCTAAAAGCCTTGT
CAGGTGCAGATCCGATCCAGGCAAGGCGTTTTGCGGCTGCGAAGGCTCTTGAACTTGGATGGGGCGGTGTCTCAAAAGTCTCTGCCATAACTGGATTTTC
GCGTACTACTATCAATAAGGGCATTCAAGAGCTTGAGAGCAACGAAGATCTGAAGCCACCCGAAAGGCTTCGCAAGCCGGGTGGTGGTCGAAAACGAGTT
GCAGATAGAGAGCCAAACCTATTGAACGACCTAGAAAAAATAATGGAAGAGAGTACAGCAGGCGACCCAATGAGTCTTCTCAAATGGACATATAAATCAA
CCTATGCCATCGCCGAAGAACTGCAATCGAGAGGTCATAAAGTAAGTCATGATACAGTGAGACGGCTATTGAAGGAAAGCGGCTACTCGCTTCAAGCCAA
TCGAAAAAACCTAGAAGGTAAGTCAGGTCCAGAGAGAGATACTCAATTCCGCTATGTCAGTAGTCAAGCCGCCAAATTCATTGATGCAGGTGATCCTGTA
ATTTCTGTAGATGCAAAGAAAAAGGAACTCGTCGGCAACTACAAGAATTCAGGCAGGACTTGGAGGCAAAAAGGACAACCAGAACTGGTTAATGTGTATG
ATTTCCCATCCAAAGCGATTGGAGCCGCTATCCCTTATGGGGTTTATGATCCTAAAAGAAACGAAGGGGTCGTTAATATCGGAAAGAGCCACAATACCGC
AGAATTTGCCGTTGAGAGCATCAGACAATGGTGGAATTTAGTTGGAAAATATCGCTATGCAGGATGCAAAAATTTGCTCATTTGCGCGGATGGTGGTGGG
AGCAACGGAAGCCGAAACAGGGGATGGAAGTTCTTTTTGCAGCAATTGGCTGATGAAATTGGAATAACCATTACGGTTAGTCATTTTCCACCTGGGACGA
GCAAGTGGAATAAGATCGAGCATTGCATGTTCTCATTTATAAGCATGAATTGGCGAGGAAAGCCTTTATCCAGCTATGAAACCATTATCAAGCTAATCGG
ATCAACTAAGACAAAGAAGGGGCTAAGGATAGAGGCTCGATTAGATGACCGAGATTATGAAACGGGAATAAAGATATTGGACGAGGATATGGCGCGATTG
AAAATTAGTGTACATGAATTATATCCCATGTGGAACTATTCAATAGAACCACGTCTAACTACATCAAAATAGCGAGAAATTGAATATATTATTTAGCGTC
AAGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1215 bp404 aa581272+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MESEVDYEPFLKALSGADPIQARRFAAAKALELGWGGVSKVSAITGFSRTTINKGIQELESNEDLKPPERLRKPGGGRKRVADREPNLLNDLEKIMEEST
AGDPMSLLKWTYKSTYAIAEELQSRGHKVSHDTVRRLLKESGYSLQANRKNLEGKSGPERDTQFRYVSSQAAKFIDAGDPVISVDAKKKELVGNYKNSGR
TWRQKGQPELVNVYDFPSKAIGAAIPYGVYDPKRNEGVVNIGKSHNTAEFAVESIRQWWNLVGKYRYAGCKNLLICADGGGSNGSRNRGWKFFLQQLADE
IGITITVSHFPPGTSKWNKIEHCMFSFISMNWRGKPLSSYETIIKLIGSTKTKKGLRIEARLDDRDYETGIKILDEDMARLKISVHELYPMWNYSIEPRL
TTSK

 

Blast result :
Comments
ISMco6 is 76% aa similar to ISArch16.
References
1] ISfinder annotation (2013)
2] Barber,R.D., Zhang,L., Harnack,M., Olson,M.V., Kaul,R., Ingram-Smith,C. and Smith,K.S. (2011) J. Bacteriol. 193 (14), 3668-3669.