ISLefe1

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_017094 ND Leptospirillum ferrooxidans
Leptospirillum ferrooxidans C2-3
DNA section
IS Length : 1710 bp

Ends


IR Length : 15/18

IRL : CCCAAGAACCGCGATTGAAAGAGAAAAAGTGAGGAAAAAAACAAGAAACC
IRR : CCCAAAAACCGAAATTGATTTTAAAACCGGCCCTCGCAAGAGGGGTAAAG

Insertion site


Left flankDirect repeatRight flankDR Length
AAGCGGTCCCTCAAAAAGCCCTGAAG6
AATTCCTCACCGCTTCTGAAGATGC5
AATACTGCTGTAGGGAGTTGTAGCGA6
GATATTTTGGAGAAGAAAGAATCTT5
TGACCCTTAACTAACCCCAC0

DNA sequence

CCCAAGAACCGCGATTGAAAGAGAAAAAGTGAGGAAAAAAACAAGAAACCCCTTGTCGTTTCTGGTAAAAGGGATGTTGTCAAAGACAACCATTTACCCA
CCCGAAGGGTGAAACGAAAGGGGCGACTTTATGGTACGACAAACCGTTCTTCCATTCAAACTCGAATCGACCGACGACACGATCACCTCTCAGGCGGGGC
TGGTTCTGTTTGGGGAGTTTCTTCAGTCTCTCGGACTGAAGAAGAAGATTGACCGGGCCTTCGGGAAGCCCGGAAGCGGAGCGGGGTACAGAGCCTCGTC
CTATGTGGTCCCCCTGTTGCTGATGCTGCAAGGCGGAGGACGGAGCCTTTGTGACCTTCGGATGATCGCCCGGGACAAGGGACTGTTGGGGCTTCTTGGT
ATCGGAGAGGTGCCGTCGACGGACGCGTTCGGCCGGTGGCTCCGGCGGATGGGGGCTTCCGACACCGGGTTGTCGGCACTGGAGTCGGTCATCGCCCGGG
TTCTGTCGGTTCTGGGCAAGGCACTTCGGAAGAGGCGGAAGAAGGCCGGCCTGTCTTGGGTCCGGGAGGTGACCCTCGACATCGATGCCAGCCAGATCGT
GGCGGAAAAGGCCGAAGCCCTGTGGACCTACAAGGGGGAGAAGGGGTACATGCCTCTGGTGGGGCACGTGAAGGAACTCTCCGGGATGGTGATACACGAA
GAATTTCGGGAGGGGAACGTCTCTCCGGGAGCGGACCATGTTCCGTTTCTGAAGGACTGCCTCCGGCGTCTTCCGGCAGGGATCCGGATCGCCCGGTTTC
GGGCGGACAGCGCGTCGTACCAGGCCTCCGTCATCAATTTCTGCCAGGAGCGGGGAATCCGGTTCGTGATCGGAGCCGATCTGGATGTGGCGGTGCGGGC
GGCGATCGGAAGGATCCCCGAGAGCGACTGGAGGCCCTATCAGGACGGTCATATCGCCGAGACGGTGCACACGATGAACAAAACCCACAACGCCTTCCGG
CTCATCGTGGTGCGCCGGCGAGTGCAGACCCCTTTGCCGGGAATGGAGGAGGAAGGAGAAAAAGAGGCTTCTCCCGATGTCCGATACAAGGTCCTGGCCA
CCAGCCACAAGGAGATCCCCGAATGGGTCGTGGCCTGGTACAAGCAGCGGGGAGAGGATTCCGAGAACCGGATCAAGGAGCTGAAGATCGGGTTCGGGAT
GGAGCGGATGCCCAGTGGAGACACGAAAGCCAACGGGATCTTTTTCCGGATCGGAGTGCTGGCCTACAACCTCTTTCTCCTGTTCCGGGGACAGATTCTG
GACGAGAGCTTCAAGCGGGCCCAGGTCCAGACGGTCCGATGGCAGATCTATCAGATGGCCGGGAAAGTGGTGCGTCATGCGGGCGTTCTCGTTCTCAAGG
TGGCGGAGGATGTTCTGGCCCCCTTTCGGAGCTTTCGGGAGAGGTGCTGGCGGCTCTGGTGCCGGGAAGGAAGTCCGTAAGACTTCCCTCTTCGTCCACG
CCTCCCTGAAAACGCACCCGACCGGATCGGAGGGGAACCTGCGTCCAAAAGAGAGGGGAAAACCCGGAAAAAGCCGAAAACGACCCCGGTTTTCCCTCTT
CTGGCCATTAGATCGGGATGCGGTGGGGAATCCTTCCCTTCAAAAATGAAGGCTCCCTCTCTTTACCCCTCTTGCGAGGGCCGGTTTTAAAATCAATTTC
GGTTTTTGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1350 bp449 aa1311480+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVRQTVLPFKLESTDDTITSQAGLVLFGEFLQSLGLKKKIDRAFGKPGSGAGYRASSYVVPLLLMLQGGGRSLCDLRMIARDKGLLGLLGIGEVPSTDAF
GRWLRRMGASDTGLSALESVIARVLSVLGKALRKRRKKAGLSWVREVTLDIDASQIVAEKAEALWTYKGEKGYMPLVGHVKELSGMVIHEEFREGNVSPG
ADHVPFLKDCLRRLPAGIRIARFRADSASYQASVINFCQERGIRFVIGADLDVAVRAAIGRIPESDWRPYQDGHIAETVHTMNKTHNAFRLIVVRRRVQT
PLPGMEEEGEKEASPDVRYKVLATSHKEIPEWVVAWYKQRGEDSENRIKELKIGFGMERMPSGDTKANGIFFRIGVLAYNLFLLFRGQILDESFKRAQVQ
TVRWQIYQMAGKVVRHAGVLVLKVAEDVLAPFRSFRERCWRLWCREGSP

 

Blast result :
Comments
ISLefe1 is 87% aa similar to ISLsp3.
References
1] ISfinder annotation (2013)
2] Fujimura,R., Sato,Y., Nishizawa,T., Oshima,K., Kim,S.W., Hattori,M., Kamijo,T. and Ohta,H. (2012) J. Bacteriol. 194 (15), 4122-4123.