ISLefe1
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_017094 | ND | Leptospirillum ferrooxidans | Leptospirillum ferrooxidans C2-3 |
DNA section
IS Length : 1710 bp
Ends
IR Length : 15/18
IRL : CCCAAGAACCGCGATTGAAAGAGAAAAAGTGAGGAAAAAAACAAGAAACC
IRR : CCCAAAAACCGAAATTGATTTTAAAACCGGCCCTCGCAAGAGGGGTAAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAGCGGTCCC | TCAAAA | AGCCCTGAAG | 6 |
AATTCCTCAC | CGCTT | CTGAAGATGC | 5 |
AATACTGCTG | TAGGGA | GTTGTAGCGA | 6 |
GATATTTTGG | AGAAG | AAAGAATCTT | 5 |
TGACCCTTAA | CTAACCCCAC | 0 |
DNA sequence
CCCAAGAACCGCGATTGAAAGAGAAAAAGTGAGGAAAAAAACAAGAAACCCCTTGTCGTTTCTGGTAAAAGGGATGTTGTCAAAGACAACCATTTACCCA
CCCGAAGGGTGAAACGAAAGGGGCGACTTTATGGTACGACAAACCGTTCTTCCATTCAAACTCGAATCGACCGACGACACGATCACCTCTCAGGCGGGGC
TGGTTCTGTTTGGGGAGTTTCTTCAGTCTCTCGGACTGAAGAAGAAGATTGACCGGGCCTTCGGGAAGCCCGGAAGCGGAGCGGGGTACAGAGCCTCGTC
CTATGTGGTCCCCCTGTTGCTGATGCTGCAAGGCGGAGGACGGAGCCTTTGTGACCTTCGGATGATCGCCCGGGACAAGGGACTGTTGGGGCTTCTTGGT
ATCGGAGAGGTGCCGTCGACGGACGCGTTCGGCCGGTGGCTCCGGCGGATGGGGGCTTCCGACACCGGGTTGTCGGCACTGGAGTCGGTCATCGCCCGGG
TTCTGTCGGTTCTGGGCAAGGCACTTCGGAAGAGGCGGAAGAAGGCCGGCCTGTCTTGGGTCCGGGAGGTGACCCTCGACATCGATGCCAGCCAGATCGT
GGCGGAAAAGGCCGAAGCCCTGTGGACCTACAAGGGGGAGAAGGGGTACATGCCTCTGGTGGGGCACGTGAAGGAACTCTCCGGGATGGTGATACACGAA
GAATTTCGGGAGGGGAACGTCTCTCCGGGAGCGGACCATGTTCCGTTTCTGAAGGACTGCCTCCGGCGTCTTCCGGCAGGGATCCGGATCGCCCGGTTTC
GGGCGGACAGCGCGTCGTACCAGGCCTCCGTCATCAATTTCTGCCAGGAGCGGGGAATCCGGTTCGTGATCGGAGCCGATCTGGATGTGGCGGTGCGGGC
GGCGATCGGAAGGATCCCCGAGAGCGACTGGAGGCCCTATCAGGACGGTCATATCGCCGAGACGGTGCACACGATGAACAAAACCCACAACGCCTTCCGG
CTCATCGTGGTGCGCCGGCGAGTGCAGACCCCTTTGCCGGGAATGGAGGAGGAAGGAGAAAAAGAGGCTTCTCCCGATGTCCGATACAAGGTCCTGGCCA
CCAGCCACAAGGAGATCCCCGAATGGGTCGTGGCCTGGTACAAGCAGCGGGGAGAGGATTCCGAGAACCGGATCAAGGAGCTGAAGATCGGGTTCGGGAT
GGAGCGGATGCCCAGTGGAGACACGAAAGCCAACGGGATCTTTTTCCGGATCGGAGTGCTGGCCTACAACCTCTTTCTCCTGTTCCGGGGACAGATTCTG
GACGAGAGCTTCAAGCGGGCCCAGGTCCAGACGGTCCGATGGCAGATCTATCAGATGGCCGGGAAAGTGGTGCGTCATGCGGGCGTTCTCGTTCTCAAGG
TGGCGGAGGATGTTCTGGCCCCCTTTCGGAGCTTTCGGGAGAGGTGCTGGCGGCTCTGGTGCCGGGAAGGAAGTCCGTAAGACTTCCCTCTTCGTCCACG
CCTCCCTGAAAACGCACCCGACCGGATCGGAGGGGAACCTGCGTCCAAAAGAGAGGGGAAAACCCGGAAAAAGCCGAAAACGACCCCGGTTTTCCCTCTT
CTGGCCATTAGATCGGGATGCGGTGGGGAATCCTTCCCTTCAAAAATGAAGGCTCCCTCTCTTTACCCCTCTTGCGAGGGCCGGTTTTAAAATCAATTTC
GGTTTTTGGG
CCCGAAGGGTGAAACGAAAGGGGCGACTTTATGGTACGACAAACCGTTCTTCCATTCAAACTCGAATCGACCGACGACACGATCACCTCTCAGGCGGGGC
TGGTTCTGTTTGGGGAGTTTCTTCAGTCTCTCGGACTGAAGAAGAAGATTGACCGGGCCTTCGGGAAGCCCGGAAGCGGAGCGGGGTACAGAGCCTCGTC
CTATGTGGTCCCCCTGTTGCTGATGCTGCAAGGCGGAGGACGGAGCCTTTGTGACCTTCGGATGATCGCCCGGGACAAGGGACTGTTGGGGCTTCTTGGT
ATCGGAGAGGTGCCGTCGACGGACGCGTTCGGCCGGTGGCTCCGGCGGATGGGGGCTTCCGACACCGGGTTGTCGGCACTGGAGTCGGTCATCGCCCGGG
TTCTGTCGGTTCTGGGCAAGGCACTTCGGAAGAGGCGGAAGAAGGCCGGCCTGTCTTGGGTCCGGGAGGTGACCCTCGACATCGATGCCAGCCAGATCGT
GGCGGAAAAGGCCGAAGCCCTGTGGACCTACAAGGGGGAGAAGGGGTACATGCCTCTGGTGGGGCACGTGAAGGAACTCTCCGGGATGGTGATACACGAA
GAATTTCGGGAGGGGAACGTCTCTCCGGGAGCGGACCATGTTCCGTTTCTGAAGGACTGCCTCCGGCGTCTTCCGGCAGGGATCCGGATCGCCCGGTTTC
GGGCGGACAGCGCGTCGTACCAGGCCTCCGTCATCAATTTCTGCCAGGAGCGGGGAATCCGGTTCGTGATCGGAGCCGATCTGGATGTGGCGGTGCGGGC
GGCGATCGGAAGGATCCCCGAGAGCGACTGGAGGCCCTATCAGGACGGTCATATCGCCGAGACGGTGCACACGATGAACAAAACCCACAACGCCTTCCGG
CTCATCGTGGTGCGCCGGCGAGTGCAGACCCCTTTGCCGGGAATGGAGGAGGAAGGAGAAAAAGAGGCTTCTCCCGATGTCCGATACAAGGTCCTGGCCA
CCAGCCACAAGGAGATCCCCGAATGGGTCGTGGCCTGGTACAAGCAGCGGGGAGAGGATTCCGAGAACCGGATCAAGGAGCTGAAGATCGGGTTCGGGAT
GGAGCGGATGCCCAGTGGAGACACGAAAGCCAACGGGATCTTTTTCCGGATCGGAGTGCTGGCCTACAACCTCTTTCTCCTGTTCCGGGGACAGATTCTG
GACGAGAGCTTCAAGCGGGCCCAGGTCCAGACGGTCCGATGGCAGATCTATCAGATGGCCGGGAAAGTGGTGCGTCATGCGGGCGTTCTCGTTCTCAAGG
TGGCGGAGGATGTTCTGGCCCCCTTTCGGAGCTTTCGGGAGAGGTGCTGGCGGCTCTGGTGCCGGGAAGGAAGTCCGTAAGACTTCCCTCTTCGTCCACG
CCTCCCTGAAAACGCACCCGACCGGATCGGAGGGGAACCTGCGTCCAAAAGAGAGGGGAAAACCCGGAAAAAGCCGAAAACGACCCCGGTTTTCCCTCTT
CTGGCCATTAGATCGGGATGCGGTGGGGAATCCTTCCCTTCAAAAATGAAGGCTCCCTCTCTTTACCCCTCTTGCGAGGGCCGGTTTTAAAATCAATTTC
GGTTTTTGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1350 bp | 449 aa | 131 | 1480 | + | No |
Chemistry : DDE
ORF sequence :
MVRQTVLPFKLESTDDTITSQAGLVLFGEFLQSLGLKKKIDRAFGKPGSGAGYRASSYVVPLLLMLQGGGRSLCDLRMIARDKGLLGLLGIGEVPSTDAF
GRWLRRMGASDTGLSALESVIARVLSVLGKALRKRRKKAGLSWVREVTLDIDASQIVAEKAEALWTYKGEKGYMPLVGHVKELSGMVIHEEFREGNVSPG
ADHVPFLKDCLRRLPAGIRIARFRADSASYQASVINFCQERGIRFVIGADLDVAVRAAIGRIPESDWRPYQDGHIAETVHTMNKTHNAFRLIVVRRRVQT
PLPGMEEEGEKEASPDVRYKVLATSHKEIPEWVVAWYKQRGEDSENRIKELKIGFGMERMPSGDTKANGIFFRIGVLAYNLFLLFRGQILDESFKRAQVQ
TVRWQIYQMAGKVVRHAGVLVLKVAEDVLAPFRSFRERCWRLWCREGSP
GRWLRRMGASDTGLSALESVIARVLSVLGKALRKRRKKAGLSWVREVTLDIDASQIVAEKAEALWTYKGEKGYMPLVGHVKELSGMVIHEEFREGNVSPG
ADHVPFLKDCLRRLPAGIRIARFRADSASYQASVINFCQERGIRFVIGADLDVAVRAAIGRIPESDWRPYQDGHIAETVHTMNKTHNAFRLIVVRRRVQT
PLPGMEEEGEKEASPDVRYKVLATSHKEIPEWVVAWYKQRGEDSENRIKELKIGFGMERMPSGDTKANGIFFRIGVLAYNLFLLFRGQILDESFKRAQVQ
TVRWQIYQMAGKVVRHAGVLVLKVAEDVLAPFRSFRERCWRLWCREGSP
Blast result :
Comments
ISLefe1 is 87% aa similar to ISLsp3.
References
1] ISfinder annotation (2013)
2] Fujimura,R., Sato,Y., Nishizawa,T., Oshima,K., Kim,S.W., Hattori,M., Kamijo,T. and Ohta,H. (2012) J. Bacteriol. 194 (15), 4122-4123.
2] Fujimura,R., Sato,Y., Nishizawa,T., Oshima,K., Kim,S.W., Hattori,M., Kamijo,T. and Ohta,H. (2012) J. Bacteriol. 194 (15), 4122-4123.