ISRma1
- Family ISKra4
- Group ISKra4
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ANOG01000190 | ND | Rhodopirellula maiorica | Rhodopirellula maiorica SM1 |
DNA section
IS Length : 1728 bp
Ends
IR Length : 25/26
IRL : GGGTGTGACCGGCGTTCCGCCGGTCACTCTGTGAGGAATTGCCGATCTGG
IRR : GGGTGTGACCGGCGTTCCGCCGGGCAACACGCGAGTTCCGACAGCTTGTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTCGCAGTAG | TTTTTGACA | CGGAGGTCAC | 9 |
DNA sequence
GGGTGTGACCGGCGTTCCGCCGGTCACTCTGTGAGGAATTGCCGATCTGGGTAACGAAAAAGCGGCCAACCTGCCATGATCTGGGTTCTCGACATCCGAA
TCATACCGGCAGGAGGCCGCTAAGATGAGCGTCGAACATTCAAGTGCAAATGGCAACCCCACTTCGGCGACAAAGTCTCCGCAATCGCCTGCCGATCTTG
CAGAGCAATTGAAGCAACATGCCGATCACCTCCGTATGAGTGTTCGTGAGGCTGCCAGGCAAGGACACTCGTTCGATCAAACCGAGCGATCCGTTCAAGA
TGCTCTCAGGACAATCGGTTGCCAAGCAATGCAGTTTTTCATTTCAATGCAAGGAAACAGTGATCTGGGTGACGAAGTCGCCACTGACAGCGGGCCAGTT
TTGAAACGCAGCGAGCAGACCGCCACCACCCACATTCGGTCCATCTTTGGGATGCACACCTTCGAGGAGTTTACCTATGCCGCTGGAAAGAACAAGACGA
TTGCACTGCGACCGGTGAGTGCTCGGATGCAGCTACCGCCGTCACGTTGGTCTTTCCTGCTCCAGGAAATCTCACAGGCATTCTGTGCCGAAGCGGCGTT
CAATCAAGCAGCAGACCATTTGGAACTGGTTTTCGGTGGCAAGTTCTCGGTCGACACCATGGAAGCGATCAATCTCAGCATGGGCGTCGACGCCGGGGAG
TTCTTGGATCGGCTCCCAAAACCCGATCCGCAGGAAGAAGCGGAGTTCCTCGTCGCTACGGCGGACTGCAAAGGCGTCCCGTTGCTAAAAAAGGATGCCG
CGAAAGTGAAAGCCTTTCAAACCGCCAAGAAACGTCCTGGCAATCGACGCATGGCGACAGTCACAAGTCTCTACAGTGTCGATCCTTATTATCGCACGGC
CGAAGACCTACTAGCCGCACTCTTTCGAGAGGATCCCACTCAAGTCGACACATCGACCGCACCCACGGTACGTCCCGAACCGCAGTTCAAGCACACGACG
GCTCACTTCCCAACCATTGAGGTCGATGCGGAAGACGATCAGGAAATTCGGATTAGCGGAATTCACAGTGGGTTAGCTTGGCTCGCCACCGAAGTGCAAT
CACGTCGAGCTAAGGATCAGAAATTAATTGTCTTGATGGATGGCCAAGAGGCTTTGTGGGACACCTCGGCGATGCACTTTTGCGATCAACACACCGTTGA
GATACTCGATTTCTTGCACGTGGCAGTTTACATCTGGGCGTCCGCCGCGTTGTTTCACCAGAGCAGTGAGATGAAAGAGGCTTTCACCCGTGATCTTTTG
GGTCGGCTACTTGCTGGCGAAGTCAAGAGCGTCATCCGGGGTCTGCGTCGTATGGGTTCGCTGCACAAGCTCACAGGCGAAGCGGCAGATGATCTTGCAC
GCATCACGGGCTATCTTGAAAAACATGCTCAGAGGATGAAGTACGATGAATACCTCGACATGGGCTACCCAGTTTGCTCCGGCGTGATTAAAGGAGCGTG
TCGGCACTTGGTGAAAGATCGAATGGAACGCAGTGGGATGCGTTGGTCACTTGAAGGCGCTCGCAGTATGCTCCATGTTCGAGCTACATATCAGAGCGAT
TACTGGAACCAATTTCATGACGAACGTAAAGCAAAGATCATGGCCCGTACACACACCAACCGAGCTCTTGTCGCATTCAACAAGCTGTCGGAACTCGCGT
GTTGCCCGGCGGAACGCCGGTCACACCC
TCATACCGGCAGGAGGCCGCTAAGATGAGCGTCGAACATTCAAGTGCAAATGGCAACCCCACTTCGGCGACAAAGTCTCCGCAATCGCCTGCCGATCTTG
CAGAGCAATTGAAGCAACATGCCGATCACCTCCGTATGAGTGTTCGTGAGGCTGCCAGGCAAGGACACTCGTTCGATCAAACCGAGCGATCCGTTCAAGA
TGCTCTCAGGACAATCGGTTGCCAAGCAATGCAGTTTTTCATTTCAATGCAAGGAAACAGTGATCTGGGTGACGAAGTCGCCACTGACAGCGGGCCAGTT
TTGAAACGCAGCGAGCAGACCGCCACCACCCACATTCGGTCCATCTTTGGGATGCACACCTTCGAGGAGTTTACCTATGCCGCTGGAAAGAACAAGACGA
TTGCACTGCGACCGGTGAGTGCTCGGATGCAGCTACCGCCGTCACGTTGGTCTTTCCTGCTCCAGGAAATCTCACAGGCATTCTGTGCCGAAGCGGCGTT
CAATCAAGCAGCAGACCATTTGGAACTGGTTTTCGGTGGCAAGTTCTCGGTCGACACCATGGAAGCGATCAATCTCAGCATGGGCGTCGACGCCGGGGAG
TTCTTGGATCGGCTCCCAAAACCCGATCCGCAGGAAGAAGCGGAGTTCCTCGTCGCTACGGCGGACTGCAAAGGCGTCCCGTTGCTAAAAAAGGATGCCG
CGAAAGTGAAAGCCTTTCAAACCGCCAAGAAACGTCCTGGCAATCGACGCATGGCGACAGTCACAAGTCTCTACAGTGTCGATCCTTATTATCGCACGGC
CGAAGACCTACTAGCCGCACTCTTTCGAGAGGATCCCACTCAAGTCGACACATCGACCGCACCCACGGTACGTCCCGAACCGCAGTTCAAGCACACGACG
GCTCACTTCCCAACCATTGAGGTCGATGCGGAAGACGATCAGGAAATTCGGATTAGCGGAATTCACAGTGGGTTAGCTTGGCTCGCCACCGAAGTGCAAT
CACGTCGAGCTAAGGATCAGAAATTAATTGTCTTGATGGATGGCCAAGAGGCTTTGTGGGACACCTCGGCGATGCACTTTTGCGATCAACACACCGTTGA
GATACTCGATTTCTTGCACGTGGCAGTTTACATCTGGGCGTCCGCCGCGTTGTTTCACCAGAGCAGTGAGATGAAAGAGGCTTTCACCCGTGATCTTTTG
GGTCGGCTACTTGCTGGCGAAGTCAAGAGCGTCATCCGGGGTCTGCGTCGTATGGGTTCGCTGCACAAGCTCACAGGCGAAGCGGCAGATGATCTTGCAC
GCATCACGGGCTATCTTGAAAAACATGCTCAGAGGATGAAGTACGATGAATACCTCGACATGGGCTACCCAGTTTGCTCCGGCGTGATTAAAGGAGCGTG
TCGGCACTTGGTGAAAGATCGAATGGAACGCAGTGGGATGCGTTGGTCACTTGAAGGCGCTCGCAGTATGCTCCATGTTCGAGCTACATATCAGAGCGAT
TACTGGAACCAATTTCATGACGAACGTAAAGCAAAGATCATGGCCCGTACACACACCAACCGAGCTCTTGTCGCATTCAACAAGCTGTCGGAACTCGCGT
GTTGCCCGGCGGAACGCCGGTCACACCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1611 bp | 536 aa | 125 | 1735 | + | No |
Chemistry : DDE
ORF sequence :
MSVEHSSANGNPTSATKSPQSPADLAEQLKQHADHLRMSVREAARQGHSFDQTERSVQDALRTIGCQAMQFFISMQGNSDLGDEVATDSGPVLKRSEQTA
TTHIRSIFGMHTFEEFTYAAGKNKTIALRPVSARMQLPPSRWSFLLQEISQAFCAEAAFNQAADHLELVFGGKFSVDTMEAINLSMGVDAGEFLDRLPKP
DPQEEAEFLVATADCKGVPLLKKDAAKVKAFQTAKKRPGNRRMATVTSLYSVDPYYRTAEDLLAALFREDPTQVDTSTAPTVRPEPQFKHTTAHFPTIEV
DAEDDQEIRISGIHSGLAWLATEVQSRRAKDQKLIVLMDGQEALWDTSAMHFCDQHTVEILDFLHVAVYIWASAALFHQSSEMKEAFTRDLLGRLLAGEV
KSVIRGLRRMGSLHKLTGEAADDLARITGYLEKHAQRMKYDEYLDMGYPVCSGVIKGACRHLVKDRMERSGMRWSLEGARSMLHVRATYQSDYWNQFHDE
RKAKIMARTHTNRALVAFNKLSELACCPAERRSHPF
TTHIRSIFGMHTFEEFTYAAGKNKTIALRPVSARMQLPPSRWSFLLQEISQAFCAEAAFNQAADHLELVFGGKFSVDTMEAINLSMGVDAGEFLDRLPKP
DPQEEAEFLVATADCKGVPLLKKDAAKVKAFQTAKKRPGNRRMATVTSLYSVDPYYRTAEDLLAALFREDPTQVDTSTAPTVRPEPQFKHTTAHFPTIEV
DAEDDQEIRISGIHSGLAWLATEVQSRRAKDQKLIVLMDGQEALWDTSAMHFCDQHTVEILDFLHVAVYIWASAALFHQSSEMKEAFTRDLLGRLLAGEV
KSVIRGLRRMGSLHKLTGEAADDLARITGYLEKHAQRMKYDEYLDMGYPVCSGVIKGACRHLVKDRMERSGMRWSLEGARSMLHVRATYQSDYWNQFHDE
RKAKIMARTHTNRALVAFNKLSELACCPAERRSHPF
Blast result :
Comments
ISRma1 is 47% aa similar to ISDpr10.
The STOP codon is missing, the transposase use a STOP codon in the DR.
The STOP codon is missing, the transposase use a STOP codon in the DR.
References
1] ISfinder annotation (2013)
2] Richter,M., Richter-Heitmann,T., Frank,C., Harder,J. and Glockner,F.O. (2012) Direct submission GenBank.
2] Richter,M., Richter-Heitmann,T., Frank,C., Harder,J. and Glockner,F.O. (2012) Direct submission GenBank.