ISAcce1
- Family ISKra4
- Group ISKra4
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_JH556659 | ND | Acetivibrio cellulolyticus | Acetivibrio cellulolyticus CD2 |
DNA section
IS Length : 1967 bp
Ends
IR Length : 24/31
IRL : GGGTGCATTTAATTTCCGCGAACCATATTGTGGAAATAACATCAATAAGT
IRR : GGGTGCATAAAATAATCGTGAACCATATTTTTACATTCAGGCTGCTTTTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTTATTGGCA | CT/CCTTTCAA | TGCCATATTT | 11 |
DNA sequence
GGGTGCATTTAATTTCCGCGAACCATATTGTGGAAATAACATCAATAAGTTTTAGTGTTGTTTGATTACCCAAGAAGATTATTTTAAATCATAACCATTT
ATAAAAGTATAATAGCTAAATCTTGATATTATGGAGCTGATTTAGATCCAGTGCCTGTTGTTTTAGTGTCAAACGACTCCATGCGTGACCTTCGCAAAAA
ATCAGTAGGCCTCGGCTTGATAATTTTTCGCCGCGTCTATGGGACATCCTGTCCCGAGACGCTAAAAATGCCGTCCTTGGCATTTTTGCTTCAAAATTAT
CAAGCTTTCGGCCACTGATTTTAATGCTCAGGTCAAGCATTACGTCATTTGACACTAAAACAGGGTATAAGCCTAATTTCGGCCTTTCTTATGGATACAT
TTAGTTTTCGTACACTATATTATTCCAATTAGAAATTAGTAGTAGAAACACAGTTAAAAAATATAGAAAGCAAAAGGAATAGAAGCTGGAATAGTTCAAA
ACAATGGGCTTATTCCAGTTTTTGTTTTGCGTCATGATGTAAAATAGAGCATAAATTTACATATATAAACAAATATAAAAATCAATGTATAATAGGGGGT
TACAGAAGATGAACAATAAAATAGATGTAAATTCAATTATGAAAGAACTCGAAGAAAAATTAAGAAACGGTCTGAAAGATAATAAATTAGATGCTACAGG
TATTAGTCAATTGATTGGGGAACATCTGGAAAAAGCAAAAGAAAAGGTTTTACAAGATACAAGTAAAATGATAACTGAAGAAGTTAAGCCATCCGAAAAC
AAAAAGAAAAAGCAACCGTTAGTTATTTTAACGCCCTATGGTAAGCTTGTTTTTGTTCGTAATATGGACTATTGCAGTAAATGTGGGAAATTATACGGGC
ATAATGATGAATTATTCCAAATTAATGAGGAACATAGATTAACCAAAGATTCTCTTGAACTTATAACATATATAGGACAAATAATCCCCGGGTTTAATAA
TGCTCAAGAAGTATTATTAAAATTAAGGGGAATAGAAATCAGTGCTACCCAAATCCAAATTTTATCTGAAGAAGTTGGTAAAGAATTGTTTGAAATACAA
ATGGAAAAGTCTAATCTAGCATATTCCTGTCCTGAAGTAGCAGCTCCAGCAATGCTTGAAAAAGATAAAGAAAATACAATTTTATACATATCTATGGATG
GCTCTGCGGTTAACACTCGTGTTGAAGATGAAAATGGAAGCACATGGAAGGAAATGAAACTTGGACTAACATTCCTAGACAAGGATGTAATCAAGCGAAA
AAATGGCAGTTCCATTATCACAAAAAAGGAATATATTACTTACATGGGCAGTGTAGCAGAATTTAAGAAAGTGCTCTTTGATTCTGCTGCAAGAGCTGGA
TATGGCAGAGTGAAAAAGGTAGTGATAATTGGAGATGGTGCACATTGGGTATGGAATATGTGTGAAGAGATGTTTCCTGATGCTGAATACATTCTAGATT
TTTATCATATGACAGAAAACGTTTATAGCTATGCGAAAGAGTTGCTTTCATGCATTGAAAAGAAGTATAAAAAATGGGCAGATACAATGATATACTATAT
AAAGACAGAACAATTCAAAAAGGCATTGAAAAAGGTTGCAAGAAGTACTATAAGTGTGGATAAGGCTAACAAAACAGTGAATCTTGAAGGTTATATCAAA
AATAACATTGATAAGATGCATTATCTTGAATATAAAAACAAAAATTATTACATTGGTAGTGGTATGATAGAAAGTGGTAACAAGACCATTGTTCAAAAGC
GTATGAAGCAGGCTGGCATGCGGTGGGGTACTGATGGAGCTCAGTATATGGCCGTGCTAAGAGCTAAACATGAAAGTAACCGTTGGGAAGAGGTTGAGAA
AGTTATATTTAAGAAATCAAAAGCAGCCTGAATGTAAAAATATGGTTCACGATTATTTTATGCACCC
ATAAAAGTATAATAGCTAAATCTTGATATTATGGAGCTGATTTAGATCCAGTGCCTGTTGTTTTAGTGTCAAACGACTCCATGCGTGACCTTCGCAAAAA
ATCAGTAGGCCTCGGCTTGATAATTTTTCGCCGCGTCTATGGGACATCCTGTCCCGAGACGCTAAAAATGCCGTCCTTGGCATTTTTGCTTCAAAATTAT
CAAGCTTTCGGCCACTGATTTTAATGCTCAGGTCAAGCATTACGTCATTTGACACTAAAACAGGGTATAAGCCTAATTTCGGCCTTTCTTATGGATACAT
TTAGTTTTCGTACACTATATTATTCCAATTAGAAATTAGTAGTAGAAACACAGTTAAAAAATATAGAAAGCAAAAGGAATAGAAGCTGGAATAGTTCAAA
ACAATGGGCTTATTCCAGTTTTTGTTTTGCGTCATGATGTAAAATAGAGCATAAATTTACATATATAAACAAATATAAAAATCAATGTATAATAGGGGGT
TACAGAAGATGAACAATAAAATAGATGTAAATTCAATTATGAAAGAACTCGAAGAAAAATTAAGAAACGGTCTGAAAGATAATAAATTAGATGCTACAGG
TATTAGTCAATTGATTGGGGAACATCTGGAAAAAGCAAAAGAAAAGGTTTTACAAGATACAAGTAAAATGATAACTGAAGAAGTTAAGCCATCCGAAAAC
AAAAAGAAAAAGCAACCGTTAGTTATTTTAACGCCCTATGGTAAGCTTGTTTTTGTTCGTAATATGGACTATTGCAGTAAATGTGGGAAATTATACGGGC
ATAATGATGAATTATTCCAAATTAATGAGGAACATAGATTAACCAAAGATTCTCTTGAACTTATAACATATATAGGACAAATAATCCCCGGGTTTAATAA
TGCTCAAGAAGTATTATTAAAATTAAGGGGAATAGAAATCAGTGCTACCCAAATCCAAATTTTATCTGAAGAAGTTGGTAAAGAATTGTTTGAAATACAA
ATGGAAAAGTCTAATCTAGCATATTCCTGTCCTGAAGTAGCAGCTCCAGCAATGCTTGAAAAAGATAAAGAAAATACAATTTTATACATATCTATGGATG
GCTCTGCGGTTAACACTCGTGTTGAAGATGAAAATGGAAGCACATGGAAGGAAATGAAACTTGGACTAACATTCCTAGACAAGGATGTAATCAAGCGAAA
AAATGGCAGTTCCATTATCACAAAAAAGGAATATATTACTTACATGGGCAGTGTAGCAGAATTTAAGAAAGTGCTCTTTGATTCTGCTGCAAGAGCTGGA
TATGGCAGAGTGAAAAAGGTAGTGATAATTGGAGATGGTGCACATTGGGTATGGAATATGTGTGAAGAGATGTTTCCTGATGCTGAATACATTCTAGATT
TTTATCATATGACAGAAAACGTTTATAGCTATGCGAAAGAGTTGCTTTCATGCATTGAAAAGAAGTATAAAAAATGGGCAGATACAATGATATACTATAT
AAAGACAGAACAATTCAAAAAGGCATTGAAAAAGGTTGCAAGAAGTACTATAAGTGTGGATAAGGCTAACAAAACAGTGAATCTTGAAGGTTATATCAAA
AATAACATTGATAAGATGCATTATCTTGAATATAAAAACAAAAATTATTACATTGGTAGTGGTATGATAGAAAGTGGTAACAAGACCATTGTTCAAAAGC
GTATGAAGCAGGCTGGCATGCGGTGGGGTACTGATGGAGCTCAGTATATGGCCGTGCTAAGAGCTAAACATGAAAGTAACCGTTGGGAAGAGGTTGAGAA
AGTTATATTTAAGAAATCAAAAGCAGCCTGAATGTAAAAATATGGTTCACGATTATTTTATGCACCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1323 bp | 440 aa | 609 | 1931 | + | No |
Chemistry : DDE
ORF sequence :
MNNKIDVNSIMKELEEKLRNGLKDNKLDATGISQLIGEHLEKAKEKVLQDTSKMITEEVKPSENKKKKQPLVILTPYGKLVFVRNMDYCSKCGKLYGHND
ELFQINEEHRLTKDSLELITYIGQIIPGFNNAQEVLLKLRGIEISATQIQILSEEVGKELFEIQMEKSNLAYSCPEVAAPAMLEKDKENTILYISMDGSA
VNTRVEDENGSTWKEMKLGLTFLDKDVIKRKNGSSIITKKEYITYMGSVAEFKKVLFDSAARAGYGRVKKVVIIGDGAHWVWNMCEEMFPDAEYILDFYH
MTENVYSYAKELLSCIEKKYKKWADTMIYYIKTEQFKKALKKVARSTISVDKANKTVNLEGYIKNNIDKMHYLEYKNKNYYIGSGMIESGNKTIVQKRMK
QAGMRWGTDGAQYMAVLRAKHESNRWEEVEKVIFKKSKAA
ELFQINEEHRLTKDSLELITYIGQIIPGFNNAQEVLLKLRGIEISATQIQILSEEVGKELFEIQMEKSNLAYSCPEVAAPAMLEKDKENTILYISMDGSA
VNTRVEDENGSTWKEMKLGLTFLDKDVIKRKNGSSIITKKEYITYMGSVAEFKKVLFDSAARAGYGRVKKVVIIGDGAHWVWNMCEEMFPDAEYILDFYH
MTENVYSYAKELLSCIEKKYKKWADTMIYYIKTEQFKKALKKVARSTISVDKANKTVNLEGYIKNNIDKMHYLEYKNKNYYIGSGMIESGNKTIVQKRMK
QAGMRWGTDGAQYMAVLRAKHESNRWEEVEKVIFKKSKAA
Blast result :
Comments
ISAcce1 is 49% aa similar to ISPle2.
References
1] ISfinder annotation (2013)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Held,B., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Chang,Y.-J., Jeffries,C., Mouttaki,H., He,Z., Zhou,J., Hemme,C.L. and Woyke,T. (2011) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Held,B., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Chang,Y.-J., Jeffries,C., Mouttaki,H., He,Z., Zhou,J., Hemme,C.L. and Woyke,T. (2011) Direct submission GenBank.