ISGlsp1
- Family ISKra4
- Group ISMich2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ALVY01000084 | ND | Gloeocapsa sp. | Gloeocapsa sp. PCC 73106 |
DNA section
IS Length : 1200 bp
Ends
IR Length : 30/37
IRL : GGGAGCAAGTCAAGTTTGTTAGAACACCTGTACTATTGACAAAAAAATAG
IRR : GGGAGCAAGTCACAATTGCTAGAACAAATGTACTAGTCAAAGGCTATTAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | GCTAAAGGGCTTCTGGTAGG | 0 |
DNA sequence
GGGAGCAAGTCAAGTTTGTTAGAACACCTGTACTATTGACAAAAAAATAGATATGTGTAGAGTATAAAGTTAGCTTCAAACTTAACCAGGAAATATTCCA
GCCATGAAACCTGAACAACAAGAAAAACTCAACTACTATGTAGAAAAAATAGCCAAAATTCTCTATCAAGAAGCTAAAGATGGCCAATTACAAAACTTAG
AAGCAATTGAAGAAACTATTAGAGCTCAAACCTTGGAGTATATCACCCCACAGATAGGAGTTTTTTTCTCAAAGAAACCACAGGAACAAGCACAGGTAGA
AGGCGATCGCTAAAAAGTATTATTGGAAATTTACCAATTACAGAAAAGCAAGCGGCGAAGTTGGATTTAAGCAATTATCAACAAATTAGTCCAAGCTTGC
AAAAGTGTTGCTTGAGAGCGAGTGCGAATGTATCGTATCAAAATGCGGCGAAAGATATCTGGGTTTATACAGGTATGAAAGTGAGTGAAAAAACCCAACA
AAGATTAGTACATAAGTATCAATTCCCAGTCGAAAACTGTGAAGCGAAAATCGCCGAAATTAGTGTCGATGGGGGGAAAGTAAGACTGAGGAGCGAAGCC
AAGGGAGTGGGTTGTACGTGGAAAGACTATAAAGCAATATGTGTCAATCAAACTCACAGAAAAGCTTGGTTTGGCGAGAACGAGCAATTAGTGACTTGGG
TAAATCAACAAGAAATGGAAGATCTGGTGACCTGTGTTGGTGATGGTCACCCGGGTATTTGGAACCTAGTATCTGGATTTGACTATCCTGGAGAAAACAG
AGAAATTCTTGACTGGTATCACTTAATAGAAAATCTACACAAGGTAGGAGGTTCCCAGAAAAGACTTAAACAAGCAGAAAATTTATTGTGGCAAGGAGAT
GTCTCAAAAACGATTGAATTGCTCAAGCCACTCAAACAAAAGCAAGCACACAATTTTGGTAATTATCTGGAAAAACATAGACACCGTATTATCAATTATA
GTTATTATCAAGCTGAGGAGATTTGTGCAATTGGCTCAGGTGCAGTGGAGTCAACTGTCAAGCAAATTGACCGAAGACTAAAAATATCGGGAGCACAATG
GAAAAAAGAAAATGTGCCCCAAGTGCTCAAACATCGATGTGCCTATCTTAATAATAGCCTTTGACTAGTACATTTGTTCTAGCAATTGTGACTTGCTCCC
GCCATGAAACCTGAACAACAAGAAAAACTCAACTACTATGTAGAAAAAATAGCCAAAATTCTCTATCAAGAAGCTAAAGATGGCCAATTACAAAACTTAG
AAGCAATTGAAGAAACTATTAGAGCTCAAACCTTGGAGTATATCACCCCACAGATAGGAGTTTTTTTCTCAAAGAAACCACAGGAACAAGCACAGGTAGA
AGGCGATCGCTAAAAAGTATTATTGGAAATTTACCAATTACAGAAAAGCAAGCGGCGAAGTTGGATTTAAGCAATTATCAACAAATTAGTCCAAGCTTGC
AAAAGTGTTGCTTGAGAGCGAGTGCGAATGTATCGTATCAAAATGCGGCGAAAGATATCTGGGTTTATACAGGTATGAAAGTGAGTGAAAAAACCCAACA
AAGATTAGTACATAAGTATCAATTCCCAGTCGAAAACTGTGAAGCGAAAATCGCCGAAATTAGTGTCGATGGGGGGAAAGTAAGACTGAGGAGCGAAGCC
AAGGGAGTGGGTTGTACGTGGAAAGACTATAAAGCAATATGTGTCAATCAAACTCACAGAAAAGCTTGGTTTGGCGAGAACGAGCAATTAGTGACTTGGG
TAAATCAACAAGAAATGGAAGATCTGGTGACCTGTGTTGGTGATGGTCACCCGGGTATTTGGAACCTAGTATCTGGATTTGACTATCCTGGAGAAAACAG
AGAAATTCTTGACTGGTATCACTTAATAGAAAATCTACACAAGGTAGGAGGTTCCCAGAAAAGACTTAAACAAGCAGAAAATTTATTGTGGCAAGGAGAT
GTCTCAAAAACGATTGAATTGCTCAAGCCACTCAAACAAAAGCAAGCACACAATTTTGGTAATTATCTGGAAAAACATAGACACCGTATTATCAATTATA
GTTATTATCAAGCTGAGGAGATTTGTGCAATTGGCTCAGGTGCAGTGGAGTCAACTGTCAAGCAAATTGACCGAAGACTAAAAATATCGGGAGCACAATG
GAAAAAAGAAAATGTGCCCCAAGTGCTCAAACATCGATGTGCCTATCTTAATAATAGCCTTTGACTAGTACATTTGTTCTAGCAATTGTGACTTGCTCCC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
210 bp | 69 aa | 104 | 313 | + | No |
Description : First part of the transposase
ORF sequence :
MKPEQQEKLNYYVEKIAKILYQEAKDGQLQNLEAIEETIRAQTLEYITPQIGVFFSKKPQEQAQVEGDR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
942 bp | 313 aa | 223 | 1164 | + | No |
Description : Second part of the transposase
ORF sequence :
SSNLGVYHPTDRSFFLKETTGTSTGRRRSLKSIIGNLPITEKQAAKLDLSNYQQISPSLQKCCLRASANVSYQNAAKDIWVYTGMKVSEKTQQRLVHKYQ
FPVENCEAKIAEISVDGGKVRLRSEAKGVGCTWKDYKAICVNQTHRKAWFGENEQLVTWVNQQEMEDLVTCVGDGHPGIWNLVSGFDYPGENREILDWYH
LIENLHKVGGSQKRLKQAENLLWQGDVSKTIELLKPLKQKQAHNFGNYLEKHRHRIINYSYYQAEEICAIGSGAVESTVKQIDRRLKISGAQWKKENVPQ
VLKHRCAYLNNSL
FPVENCEAKIAEISVDGGKVRLRSEAKGVGCTWKDYKAICVNQTHRKAWFGENEQLVTWVNQQEMEDLVTCVGDGHPGIWNLVSGFDYPGENREILDWYH
LIENLHKVGGSQKRLKQAENLLWQGDVSKTIELLKPLKQKQAHNFGNYLEKHRHRIINYSYYQAEEICAIGSGAVESTVKQIDRRLKISGAQWKKENVPQ
VLKHRCAYLNNSL
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1061 bp | 353 aa | 104 | 1164 | + | Yes |
Chemistry : DDE
ORF sequence :
MKPEQQEKLNYYVEKIAKILYQEAKDGQLQNLEAIEETIRAQTLEYITPQIGVFFLKETTGTSTGRRRSLKSIIGNLPITEKQAAKLDLSNYQQISPSLQ
KCCLRASANVSYQNAAKDIWVYTGMKVSEKTQQRLVHKYQFPVENCEAKIAEISVDGGKVRLRSEAKGVGCTWKDYKAICVNQTHRKAWFGENEQLVTWV
NQQEMEDLVTCVGDGHPGIWNLVSGFDYPGENREILDWYHLIENLHKVGGSQKRLKQAENLLWQGDVSKTIELLKPLKQKQAHNFGNYLEKHRHRIINYS
YYQAEEICAIGSGAVESTVKQIDRRLKISGAQWKKENVPQVLKHRCAYLNNSL
KCCLRASANVSYQNAAKDIWVYTGMKVSEKTQQRLVHKYQFPVENCEAKIAEISVDGGKVRLRSEAKGVGCTWKDYKAICVNQTHRKAWFGENEQLVTWV
NQQEMEDLVTCVGDGHPGIWNLVSGFDYPGENREILDWYHLIENLHKVGGSQKRLKQAENLLWQGDVSKTIELLKPLKQKQAHNFGNYLEKHRHRIINYS
YYQAEEICAIGSGAVESTVKQIDRRLKISGAQWKKENVPQVLKHRCAYLNNSL
Blast result :
Comments
ISGlsp1 is 81% aa similar to ISMae42.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] ISfinder annotation (2013)
2] Shih,P.M., Wu,D., Latifi,A., Axen,S.D., Fewer,D.P., Talla,E., Calteau,A., Cai,F., Tandeau de Marsac,N., Rippka,R., Herdman,M., Sivonen,K., Coursin,T., Laurent,T., Goodwin,L., Nolan,M., Davenport,K.W., Han,C.S., Rubin,E.M., Eisen,J.A., Woyke,T., Gugger,M. and Kerfeld,C.A. (2013) Proc. Natl. Acad. Sci. U.S.A. 110 (3), 1053-1058
2] Shih,P.M., Wu,D., Latifi,A., Axen,S.D., Fewer,D.P., Talla,E., Calteau,A., Cai,F., Tandeau de Marsac,N., Rippka,R., Herdman,M., Sivonen,K., Coursin,T., Laurent,T., Goodwin,L., Nolan,M., Davenport,K.W., Han,C.S., Rubin,E.M., Eisen,J.A., Woyke,T., Gugger,M. and Kerfeld,C.A. (2013) Proc. Natl. Acad. Sci. U.S.A. 110 (3), 1053-1058