ISAcas1
- Family ISKra4
- Group ISAzba1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AFEJ01000343 | ND | Acaryochloris sp. | Acaryochloris sp. CCMEE 5410 |
DNA section
IS Length : 1467 bp
Ends
IR Length : 20/22
IRL : GTAAGCGTTAATATCCTATATTTTCTATATTTTTCATGTTACTCTATCTC
IRR : GAGAGCGTTAATATCCTATATTGAAAAGCTAATTTTTAAGCAGCTTTATC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATGGATCATA | ATGTTTCATG | 0 |
DNA sequence
GTAAGCGTTAATATCCTATATTTTCTATATTTTTCATGTTACTCTATCTCTTGCAGGGATTTGAAAGTAACGGTGAGAGATGGACTACGAATTTAGAGTG
ATTGTGGAGAAAGTTTCAGTTACCACTCAGGAAGTTGTTAAGCGAGACACTCTAAAAATTTATGATATCAAGCAACCAGAATCCATATTAGATCTAGGAT
TGCGTCACGAAGAACAAATCTCGCTGCTTTCCAAAGTTCAAAGTGCTCTGTTAGCTGAACAATCTACCCTCATCGATCCTGGATTCAAGCAGTGTATCAA
ATGCGGGGAGAAAATAGGCAAGCTTGGTTTTCAATCCTCTACCTTCCATGCTGTCTTCAGCGATCATAAACTCCGTATCCAAAAACATCGGTGCAAGAAT
CCAGATTGTCGTTGGCAAAGCTCTCCCACAACAATCAGTGTCTTTGGCACAGATACTCATCCAGATTTAGTGAAACTGCAATGTGAGAATGGTGCCTTAC
ATAGCTATCGAGAAGCCGAAGACAATTTGGAAAGACAAAATGCCCAACGTCGTACTGTAAATAACCACGTCCAGATCAAAAAGATCACTGACCAAATTGG
CGAGCGCTTATCTGAGGAGAACAAAACGCCTCCCATCAGTGATGAATGTGCTCCAGCTGCCCCAGAGCTGATTGTACAAGTTGATGGGGGTCACATTCCG
ACCAAAGATAAAGACAAACGCAGTTTTGAAGCTCTATCTGGCATCGTCTATCGTCCGAGTGCGATTGAAGTGGTGGATCAACACCATCGCCAGATTACGG
ATAAGACTTGTGTTGTTTCCGCCTTAGACGATGAGTTGCAAACCATCAAAACCTACCTGCATCATGCAGCCCTTAAACAAGGAATGACCCAAGAGACCAA
GGTTACCGCTTTGGCCGATGGCGCACACAACTGTTGGTCCGTTATCTTAGCTCTGGAGCCTCACTGCAAGTCCTTAGAGTTAGTCTTGGACTGGTTTCAC
ATTGGCAAGAAATTCAAGAATGTCAGCAATGCGCTGGGTGAGACCTTCACAAAGTCTCTCGACAGTACAAAGTGGAGTTTATGGCATGGCAAGGTAGATG
ACGCTCTGCGGAAGATTGCTCTGCTTCGAGATAATATCTCAGATGACAAGAAGCAAACAAAGCTCACAAGCTTGCACGATTATTTGAAGAATAACCGTGA
TTATCTTGTCAATTATGATGAACGAGAGAAAGCAGGGTTAGCCTATACTAGCCAGGTCGCAGAATCTCATATTGACACCATCATTAATGCTCGACACAAA
AAGAAGCAGAAGATGCAATGGACTCGGGATGGTGCCCACAATGTCTTGCAAATCAGAGCCAGTATGATCAGTAATGAATGGGATGAAAAGTGGCTTGATT
TGGTACTGCCTGAAGAAGATAAAGCTGCTTAAAAATTAGCTTTTCAATATAGGATATTAACGCTCTC
ATTGTGGAGAAAGTTTCAGTTACCACTCAGGAAGTTGTTAAGCGAGACACTCTAAAAATTTATGATATCAAGCAACCAGAATCCATATTAGATCTAGGAT
TGCGTCACGAAGAACAAATCTCGCTGCTTTCCAAAGTTCAAAGTGCTCTGTTAGCTGAACAATCTACCCTCATCGATCCTGGATTCAAGCAGTGTATCAA
ATGCGGGGAGAAAATAGGCAAGCTTGGTTTTCAATCCTCTACCTTCCATGCTGTCTTCAGCGATCATAAACTCCGTATCCAAAAACATCGGTGCAAGAAT
CCAGATTGTCGTTGGCAAAGCTCTCCCACAACAATCAGTGTCTTTGGCACAGATACTCATCCAGATTTAGTGAAACTGCAATGTGAGAATGGTGCCTTAC
ATAGCTATCGAGAAGCCGAAGACAATTTGGAAAGACAAAATGCCCAACGTCGTACTGTAAATAACCACGTCCAGATCAAAAAGATCACTGACCAAATTGG
CGAGCGCTTATCTGAGGAGAACAAAACGCCTCCCATCAGTGATGAATGTGCTCCAGCTGCCCCAGAGCTGATTGTACAAGTTGATGGGGGTCACATTCCG
ACCAAAGATAAAGACAAACGCAGTTTTGAAGCTCTATCTGGCATCGTCTATCGTCCGAGTGCGATTGAAGTGGTGGATCAACACCATCGCCAGATTACGG
ATAAGACTTGTGTTGTTTCCGCCTTAGACGATGAGTTGCAAACCATCAAAACCTACCTGCATCATGCAGCCCTTAAACAAGGAATGACCCAAGAGACCAA
GGTTACCGCTTTGGCCGATGGCGCACACAACTGTTGGTCCGTTATCTTAGCTCTGGAGCCTCACTGCAAGTCCTTAGAGTTAGTCTTGGACTGGTTTCAC
ATTGGCAAGAAATTCAAGAATGTCAGCAATGCGCTGGGTGAGACCTTCACAAAGTCTCTCGACAGTACAAAGTGGAGTTTATGGCATGGCAAGGTAGATG
ACGCTCTGCGGAAGATTGCTCTGCTTCGAGATAATATCTCAGATGACAAGAAGCAAACAAAGCTCACAAGCTTGCACGATTATTTGAAGAATAACCGTGA
TTATCTTGTCAATTATGATGAACGAGAGAAAGCAGGGTTAGCCTATACTAGCCAGGTCGCAGAATCTCATATTGACACCATCATTAATGCTCGACACAAA
AAGAAGCAGAAGATGCAATGGACTCGGGATGGTGCCCACAATGTCTTGCAAATCAGAGCCAGTATGATCAGTAATGAATGGGATGAAAAGTGGCTTGATT
TGGTACTGCCTGAAGAAGATAAAGCTGCTTAAAAATTAGCTTTTCAATATAGGATATTAACGCTCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1353 bp | 450 aa | 80 | 1432 | + | No |
Chemistry : DDE
ORF sequence :
MDYEFRVIVEKVSVTTQEVVKRDTLKIYDIKQPESILDLGLRHEEQISLLSKVQSALLAEQSTLIDPGFKQCIKCGEKIGKLGFQSSTFHAVFSDHKLRI
QKHRCKNPDCRWQSSPTTISVFGTDTHPDLVKLQCENGALHSYREAEDNLERQNAQRRTVNNHVQIKKITDQIGERLSEENKTPPISDECAPAAPELIVQ
VDGGHIPTKDKDKRSFEALSGIVYRPSAIEVVDQHHRQITDKTCVVSALDDELQTIKTYLHHAALKQGMTQETKVTALADGAHNCWSVILALEPHCKSLE
LVLDWFHIGKKFKNVSNALGETFTKSLDSTKWSLWHGKVDDALRKIALLRDNISDDKKQTKLTSLHDYLKNNRDYLVNYDEREKAGLAYTSQVAESHIDT
IINARHKKKQKMQWTRDGAHNVLQIRASMISNEWDEKWLDLVLPEEDKAA
QKHRCKNPDCRWQSSPTTISVFGTDTHPDLVKLQCENGALHSYREAEDNLERQNAQRRTVNNHVQIKKITDQIGERLSEENKTPPISDECAPAAPELIVQ
VDGGHIPTKDKDKRSFEALSGIVYRPSAIEVVDQHHRQITDKTCVVSALDDELQTIKTYLHHAALKQGMTQETKVTALADGAHNCWSVILALEPHCKSLE
LVLDWFHIGKKFKNVSNALGETFTKSLDSTKWSLWHGKVDDALRKIALLRDNISDDKKQTKLTSLHDYLKNNRDYLVNYDEREKAGLAYTSQVAESHIDT
IINARHKKKQKMQWTRDGAHNVLQIRASMISNEWDEKWLDLVLPEEDKAA
Blast result :
Comments
ISAcas1 is 44% aa similar to ISSusp4.
References
1] ISfinder annotation (2013)
2] Miller,S., Kim,M., Montgomery,R., Johnson,J., Ferriera,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Nelson,K.N. and Venter,J.C. (2010) Direct submission GenBank.
2] Miller,S., Kim,M., Montgomery,R., Johnson,J., Ferriera,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Nelson,K.N. and Venter,J.C. (2010) Direct submission GenBank.