ISUnCu19

  • Family ISKra4
  • Group ISAzba1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB471762 ND uncultured bacterium
uncultured bacterium
DNA section
IS Length : 1461 bp

Ends


IR Length : 26

IRL : GGGAGTGGACAAAACATGGGGGTCATCTTCGTCGTTGCGGCCCGTGCTAA
IRR : GGGAGTGGACAAAACATGGGGGTCATGCGGCGCGTTTTCTGTTTGCGACG

Insertion site


Left flankDirect repeatRight flankDR Length
TCTTCGCGGGCATCTTTGCC0

DNA sequence

GGGAGTGGACAAAACATGGGGGTCATCTTCGTCGTTGCGGCCCGTGCTAAGGTGAGTTCTTTGCGTGTGGGGCTGCCATGGACGTACGGATTACAATCGA
AACTACCTTCGACAACGGGGAGAAGCGCACTCATCAGCTTGACGGCATTTCACGACCCTACCGGGTGACCTGTCCAGACGGGATCGGGTTGCGCCTTGAG
GATGGGAAGAGGGTTGTCGAACAGATTCAGCGGGCAATTCTTTGCGATCAGGTTGAGGAAATCATCCGAGAAAGCCGCGTATGCCCGGAGTGCGCCTCGG
TTCGTGCCATTCATGACTATCGCACGCGCGATCTCGACACGCTCTTTGGGCGGGTTCGGGTCAAAGCCGCGCGCTTGCGCCGCTGTTCTTGTGATGCCAG
GTCAGCGGCGATGCCCGGCGGACCTATTTCTCCGCTGGCCCATTTCTTTCCTGACCGGGCTACCCCGGAGCTGCAGCGGCTCCATGCGGAACTCGGGTCC
CGGCATTCCTTTCGCGAAGCCGCGCGGCTGATGAAAAGCTTCCTCCCCTGCCATCCGCCCCATCACACCACGGTGCGTGACCGGTTGGGAAGAGTAGCCA
CTGCGCTCGAGAAAAATCGAAGGGCATCAGGCGATCCCGTTGAAACACCGCCCAAAGGTGGTTTGACGGTTTTTCTGGACGGTGCGCATATCCGCTGTCG
ACCGGAGTATCAGCAGCGACACCTGGATATTGTGGTCGGAAAGATTGAAAGTCGCAATATGTGCCGACGATTTGGCTTGGTCGCTAATGCGACGGCATCG
CCAGGCAGCCGGATGCGAGAAGAGCTGTCAGACTTTGGATGGAAGCCGGGCCGTCTGTTGACGGTAATCTCTGATGGCGAGCTTGCTCTCCCGAACCTCA
TACGGAATGCCATGGGTGGCGACGGCCAGGTGAAGCACATCCTCGACTGGTGGCACATCTCGATGCGCATTCGACATGTCGAGGCCGCCGTTCAGGGTCT
GGTCCAGACACAGGGATTCACTGGAATTCCGGTGCTGTTCGAGCGCCCCGCGAAAAGCCTTCGCTGGTGGCTGTGGCATGGCAGAGCACGGGTCGCGGAA
ACTTATCTGAGATGGCTCATGCACGATTGCACCCGCCTTGCGGAAGAACCTCTGGCTGTCCGCACCGCTGCCGCTCGTGTGCAGGCCCGATGCGGGACAC
TGTACACCTATCTCGCGAACAACATGGAATCCCTTGTCGACTATGGCCGACGGTACCGTAACGGGCTGCCCATCTCGTCATCTCGTGCCGAAGGATCAGT
CGATGACATTGCCAATGCCCGCATGGGAAAGCGCAGAAGGATGCGGTGGTCGCCCAAAGGGGCTCACCGAGTAGCCGTCACAAGGGCCGCAGTTCTCGAT
GGTCGGCTGACCGTCGCAAACAGAAAACGCGCCGCATGACCCCCATGTTTTGTCCACTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1362 bp453 aa781439+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDVRITIETTFDNGEKRTHQLDGISRPYRVTCPDGIGLRLEDGKRVVEQIQRAILCDQVEEIIRESRVCPECASVRAIHDYRTRDLDTLFGRVRVKAARL
RRCSCDARSAAMPGGPISPLAHFFPDRATPELQRLHAELGSRHSFREAARLMKSFLPCHPPHHTTVRDRLGRVATALEKNRRASGDPVETPPKGGLTVFL
DGAHIRCRPEYQQRHLDIVVGKIESRNMCRRFGLVANATASPGSRMREELSDFGWKPGRLLTVISDGELALPNLIRNAMGGDGQVKHILDWWHISMRIRH
VEAAVQGLVQTQGFTGIPVLFERPAKSLRWWLWHGRARVAETYLRWLMHDCTRLAEEPLAVRTAAARVQARCGTLYTYLANNMESLVDYGRRYRNGLPIS
SSRAEGSVDDIANARMGKRRRMRWSPKGAHRVAVTRAAVLDGRLTVANRKRAA

 

Blast result :
Comments
ISUnCu19 is 77% aa similar to ISSusp4.
References
1] ISfinder annotation (2013)
2] Suenaga,H., Ohnuki,T. and Miyazaki,K. (2007) Environ. Microbiol. 9 (9), 2289-2297.