ISUnCu19
- Family ISKra4
- Group ISAzba1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB471762 | ND | uncultured bacterium | uncultured bacterium |
DNA section
IS Length : 1461 bp
Ends
IR Length : 26
IRL : GGGAGTGGACAAAACATGGGGGTCATCTTCGTCGTTGCGGCCCGTGCTAA
IRR : GGGAGTGGACAAAACATGGGGGTCATGCGGCGCGTTTTCTGTTTGCGACG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTTCGCGGG | CATCTTTGCC | 0 |
DNA sequence
GGGAGTGGACAAAACATGGGGGTCATCTTCGTCGTTGCGGCCCGTGCTAAGGTGAGTTCTTTGCGTGTGGGGCTGCCATGGACGTACGGATTACAATCGA
AACTACCTTCGACAACGGGGAGAAGCGCACTCATCAGCTTGACGGCATTTCACGACCCTACCGGGTGACCTGTCCAGACGGGATCGGGTTGCGCCTTGAG
GATGGGAAGAGGGTTGTCGAACAGATTCAGCGGGCAATTCTTTGCGATCAGGTTGAGGAAATCATCCGAGAAAGCCGCGTATGCCCGGAGTGCGCCTCGG
TTCGTGCCATTCATGACTATCGCACGCGCGATCTCGACACGCTCTTTGGGCGGGTTCGGGTCAAAGCCGCGCGCTTGCGCCGCTGTTCTTGTGATGCCAG
GTCAGCGGCGATGCCCGGCGGACCTATTTCTCCGCTGGCCCATTTCTTTCCTGACCGGGCTACCCCGGAGCTGCAGCGGCTCCATGCGGAACTCGGGTCC
CGGCATTCCTTTCGCGAAGCCGCGCGGCTGATGAAAAGCTTCCTCCCCTGCCATCCGCCCCATCACACCACGGTGCGTGACCGGTTGGGAAGAGTAGCCA
CTGCGCTCGAGAAAAATCGAAGGGCATCAGGCGATCCCGTTGAAACACCGCCCAAAGGTGGTTTGACGGTTTTTCTGGACGGTGCGCATATCCGCTGTCG
ACCGGAGTATCAGCAGCGACACCTGGATATTGTGGTCGGAAAGATTGAAAGTCGCAATATGTGCCGACGATTTGGCTTGGTCGCTAATGCGACGGCATCG
CCAGGCAGCCGGATGCGAGAAGAGCTGTCAGACTTTGGATGGAAGCCGGGCCGTCTGTTGACGGTAATCTCTGATGGCGAGCTTGCTCTCCCGAACCTCA
TACGGAATGCCATGGGTGGCGACGGCCAGGTGAAGCACATCCTCGACTGGTGGCACATCTCGATGCGCATTCGACATGTCGAGGCCGCCGTTCAGGGTCT
GGTCCAGACACAGGGATTCACTGGAATTCCGGTGCTGTTCGAGCGCCCCGCGAAAAGCCTTCGCTGGTGGCTGTGGCATGGCAGAGCACGGGTCGCGGAA
ACTTATCTGAGATGGCTCATGCACGATTGCACCCGCCTTGCGGAAGAACCTCTGGCTGTCCGCACCGCTGCCGCTCGTGTGCAGGCCCGATGCGGGACAC
TGTACACCTATCTCGCGAACAACATGGAATCCCTTGTCGACTATGGCCGACGGTACCGTAACGGGCTGCCCATCTCGTCATCTCGTGCCGAAGGATCAGT
CGATGACATTGCCAATGCCCGCATGGGAAAGCGCAGAAGGATGCGGTGGTCGCCCAAAGGGGCTCACCGAGTAGCCGTCACAAGGGCCGCAGTTCTCGAT
GGTCGGCTGACCGTCGCAAACAGAAAACGCGCCGCATGACCCCCATGTTTTGTCCACTCCC
AACTACCTTCGACAACGGGGAGAAGCGCACTCATCAGCTTGACGGCATTTCACGACCCTACCGGGTGACCTGTCCAGACGGGATCGGGTTGCGCCTTGAG
GATGGGAAGAGGGTTGTCGAACAGATTCAGCGGGCAATTCTTTGCGATCAGGTTGAGGAAATCATCCGAGAAAGCCGCGTATGCCCGGAGTGCGCCTCGG
TTCGTGCCATTCATGACTATCGCACGCGCGATCTCGACACGCTCTTTGGGCGGGTTCGGGTCAAAGCCGCGCGCTTGCGCCGCTGTTCTTGTGATGCCAG
GTCAGCGGCGATGCCCGGCGGACCTATTTCTCCGCTGGCCCATTTCTTTCCTGACCGGGCTACCCCGGAGCTGCAGCGGCTCCATGCGGAACTCGGGTCC
CGGCATTCCTTTCGCGAAGCCGCGCGGCTGATGAAAAGCTTCCTCCCCTGCCATCCGCCCCATCACACCACGGTGCGTGACCGGTTGGGAAGAGTAGCCA
CTGCGCTCGAGAAAAATCGAAGGGCATCAGGCGATCCCGTTGAAACACCGCCCAAAGGTGGTTTGACGGTTTTTCTGGACGGTGCGCATATCCGCTGTCG
ACCGGAGTATCAGCAGCGACACCTGGATATTGTGGTCGGAAAGATTGAAAGTCGCAATATGTGCCGACGATTTGGCTTGGTCGCTAATGCGACGGCATCG
CCAGGCAGCCGGATGCGAGAAGAGCTGTCAGACTTTGGATGGAAGCCGGGCCGTCTGTTGACGGTAATCTCTGATGGCGAGCTTGCTCTCCCGAACCTCA
TACGGAATGCCATGGGTGGCGACGGCCAGGTGAAGCACATCCTCGACTGGTGGCACATCTCGATGCGCATTCGACATGTCGAGGCCGCCGTTCAGGGTCT
GGTCCAGACACAGGGATTCACTGGAATTCCGGTGCTGTTCGAGCGCCCCGCGAAAAGCCTTCGCTGGTGGCTGTGGCATGGCAGAGCACGGGTCGCGGAA
ACTTATCTGAGATGGCTCATGCACGATTGCACCCGCCTTGCGGAAGAACCTCTGGCTGTCCGCACCGCTGCCGCTCGTGTGCAGGCCCGATGCGGGACAC
TGTACACCTATCTCGCGAACAACATGGAATCCCTTGTCGACTATGGCCGACGGTACCGTAACGGGCTGCCCATCTCGTCATCTCGTGCCGAAGGATCAGT
CGATGACATTGCCAATGCCCGCATGGGAAAGCGCAGAAGGATGCGGTGGTCGCCCAAAGGGGCTCACCGAGTAGCCGTCACAAGGGCCGCAGTTCTCGAT
GGTCGGCTGACCGTCGCAAACAGAAAACGCGCCGCATGACCCCCATGTTTTGTCCACTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1362 bp | 453 aa | 78 | 1439 | + | No |
Chemistry : DDE
ORF sequence :
MDVRITIETTFDNGEKRTHQLDGISRPYRVTCPDGIGLRLEDGKRVVEQIQRAILCDQVEEIIRESRVCPECASVRAIHDYRTRDLDTLFGRVRVKAARL
RRCSCDARSAAMPGGPISPLAHFFPDRATPELQRLHAELGSRHSFREAARLMKSFLPCHPPHHTTVRDRLGRVATALEKNRRASGDPVETPPKGGLTVFL
DGAHIRCRPEYQQRHLDIVVGKIESRNMCRRFGLVANATASPGSRMREELSDFGWKPGRLLTVISDGELALPNLIRNAMGGDGQVKHILDWWHISMRIRH
VEAAVQGLVQTQGFTGIPVLFERPAKSLRWWLWHGRARVAETYLRWLMHDCTRLAEEPLAVRTAAARVQARCGTLYTYLANNMESLVDYGRRYRNGLPIS
SSRAEGSVDDIANARMGKRRRMRWSPKGAHRVAVTRAAVLDGRLTVANRKRAA
RRCSCDARSAAMPGGPISPLAHFFPDRATPELQRLHAELGSRHSFREAARLMKSFLPCHPPHHTTVRDRLGRVATALEKNRRASGDPVETPPKGGLTVFL
DGAHIRCRPEYQQRHLDIVVGKIESRNMCRRFGLVANATASPGSRMREELSDFGWKPGRLLTVISDGELALPNLIRNAMGGDGQVKHILDWWHISMRIRH
VEAAVQGLVQTQGFTGIPVLFERPAKSLRWWLWHGRARVAETYLRWLMHDCTRLAEEPLAVRTAAARVQARCGTLYTYLANNMESLVDYGRRYRNGLPIS
SSRAEGSVDDIANARMGKRRRMRWSPKGAHRVAVTRAAVLDGRLTVANRKRAA
Blast result :
Comments
ISUnCu19 is 77% aa similar to ISSusp4.
References
1] ISfinder annotation (2013)
2] Suenaga,H., Ohnuki,T. and Miyazaki,K. (2007) Environ. Microbiol. 9 (9), 2289-2297.
2] Suenaga,H., Ohnuki,T. and Miyazaki,K. (2007) Environ. Microbiol. 9 (9), 2289-2297.