ISNov1

  • Family ISKra4
  • Group ISAzba1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AKFJ01000016 ND Novosphingobium sp.
Novosphingobium sp. Rr 2-17
DNA section
IS Length : 2277 bp

Ends


IR Length : 26

IRL : GGGGACCATGAGGAAGTGGGGGGTGGGTGCGATCCGGCCTGATATCGTGT
IRR : GGGGACCATGAGGAAGTGGGGGGTGGATCATGCCACCTGAATTTGGTGGG

Insertion site


Left flankDirect repeatRight flankDR Length
CGACCAAACTTGCTCGAGCG0

DNA sequence

GGGGACCATGAGGAAGTGGGGGGTGGGTGCGATCCGGCCTGATATCGTGTATCCAGGGCTCTGTGAAAAAGCGGATAGCGAGAGGTGGATTGCCCGGTGA
CGAGGCACCGGCGGCGGCGAGCGATGAAGCCGCCGACATCTTGCAGTTCAAGATCTGGTTGAAGGGTTTGAGCCCCATGATTTGGCGCCGGGTTCAGGTG
TCCGAGGACGCAACCCTTCGCGAGTTGCACGGCATTTTTCAGTTGACCATGGGTTGGGAGGGAATTCATCTGTTCTCCTTCGACCTGCGTGCGGTGCGAT
ACGGATCTCATGAACTCGGCATGCGATCACCGGACGAATCACTTGGTGACCTTCAGCTGCGCAAGGGCGCTCGCTTTGCCTATGAATACGACCTCAACAT
TCCATGGGACCATGAGGTGCGGTTGGAAGATCGGTTTCAGATTCAGCCCCGGCGTCATTATCCTTACTGCGTGGACGGACACGGAGCATGCCCGCCGGAA
GATTGCGGTGGGCCGGCAGGATTTCTTGAGCGACGCGACGCGTCATACTCGTGCGAAGCGTTCGACGACCTGACCCGGATGGCCGATTTCATCAACGAGG
TCGTGTTGAAGGAACGCTTTGAACTGCGCAGGGACACCGACCTGATGGAGGAATTGCGCGATGTACTGGAGCGTATGCAGATGCGGGAGGCTTGGAAGGG
GCGCCCGTTTGCTCGAAAGGGGGTCAACGACGCTCTGAAAAAAGGCGAGCACCTCGAACTGATGCATCAACAATGGTAACCATTGCCGCCGTCTCTTACC
CCGACGGCGACCCCAACGGGTTACGTCGATCATTGGGAGAAACGCCATGCAGGTGCGGGTCTTGCTTCAAATCACGCCAGATGACGGCGCGCCAGGCAGT
GTCGATGAAATCGCCGCCTGGGATAAGACAGCCACGGTCGCGGAAGACATCGGTCTCTCCCTCGCCGAAGGCAAGAAGCTGCTCTCCGCCGCCCAGCGCC
GGATTGTCGAGGCTCAAGCTGCAGCATGGGTCGAAGGGCGACGGTGTTGCGACGACTGCGGGCGTCGGGCGATCCTCAAGGGTCGCCATCCGATCGTCTA
CCACACGCTGTTTGGGGATGTGGCGCTGGCGAGCCCGCGCTTCCACCGATGCAGATGTCGTGGCAATATCGGGGCGGCGACGAATTCGCCGCTGGTGACG
ATCATTCCCCACCATGTCGCGCCGGAACGACTGTATCTGGAGGCCCGTTGGGCGTCCCTGGTTCCCTATGCCACTGCGGCCGAGTTACTGGCCGACGTGC
TGCCGATCGCAACCGGCGCCAACGCTACAACGGTCCGACAACACGTCCTGCGCGTCGCCGAACGCCTCGAGGCCGAGCTTCCGGCGGACAAGTGCACGTT
CATGACAGGAGTGCCGGCGGACTGGGCGGATTTGCCGATCCCGGACGGGCGCATTGTGGTCGGTTTGGACGGCGGCTACGTCCGCGACTGGGACGAACGT
AAAACCAATTTCGAGGTCATCGTCGGTCGCTCGATGCCTGAGGACGGCCCGTCACGGTATCTGGGCTTCGTCCATGGCCACGACCGCAAACCCAAGCGCC
GGCTGATCGACGTCTTGGAAAGCCAGGGTGTCCAGGCCAATCAGGACATCACCTTCCTGACCGACGGCGGAAAGGAAATTCTCGCCCTGACGGATCGCAT
CAGCCCCTGCAGCGAGCATGTCCTCGACTGGTTCCACATCACGATGAAGATCACGGTCCTGGGTCAGTTCGTGAAAGGCGTCGCTCATCTCGATGCGCTG
GCCGGCGCCCAACTTGAAGAAGATCTGGCGCGCATAAAATGGAAGCTGTGGCACGGCAATTCGATCGAAGCCCTGGAGCTGATCGATCGGTTTGAAAATG
ACGTCTCCGACATCCGGGCGGACTATCCAAACCTGCGCAAGTTCGAAGTCCTCGCACGGGAGTTTGGCGTGTACATCGCTTCGAACGCCGAGAGCCTGAT
CAACTATGGCGAACGGTATCGCGCCGGAGAACGCATCTCTTCTGCCTTTGTGGAAGCGACCGTCAACGCCGTGGTCAGCAAGCGCTTCGCTAAAAAGCAG
CAGATGCAGTGGACTCGAACAGGAGCACATCTGCTCTTGCAGACACGCACCCGAACCCTGGACGGAACGCTCCGCTCAGCATTCGAGCGATGGTATCCGG
GGATGGCAAACGACAACGTCGATCATGCCCACCAAATTCAGGTGGCATGATCCACCCCCCACTTCCTCATGGTCCCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
753 bp250 aa27779+No
ORF function : Passenger Gene
Annotation : plasmid pRIA4b ORF-3 family proteinDescription :

ORF sequence :

MRSGLISCIQGSVKKRIARGGLPGDEAPAAASDEAADILQFKIWLKGLSPMIWRRVQVSEDATLRELHGIFQLTMGWEGIHLFSFDLRAVRYGSHELGMR
SPDESLGDLQLRKGARFAYEYDLNIPWDHEVRLEDRFQIQPRRHYPYCVDGHGACPPEDCGGPAGFLERRDASYSCEAFDDLTRMADFINEVVLKERFEL
RRDTDLMEELRDVLERMQMREAWKGRPFARKGVNDALKKGEHLELMHQQW

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1404 bp467 aa8472250+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQVRVLLQITPDDGAPGSVDEIAAWDKTATVAEDIGLSLAEGKKLLSAAQRRIVEAQAAAWVEGRRCCDDCGRRAILKGRHPIVYHTLFGDVALASPRFH
RCRCRGNIGAATNSPLVTIIPHHVAPERLYLEARWASLVPYATAAELLADVLPIATGANATTVRQHVLRVAERLEAELPADKCTFMTGVPADWADLPIPD
GRIVVGLDGGYVRDWDERKTNFEVIVGRSMPEDGPSRYLGFVHGHDRKPKRRLIDVLESQGVQANQDITFLTDGGKEILALTDRISPCSEHVLDWFHITM
KITVLGQFVKGVAHLDALAGAQLEEDLARIKWKLWHGNSIEALELIDRFENDVSDIRADYPNLRKFEVLAREFGVYIASNAESLINYGERYRAGERISSA
FVEATVNAVVSKRFAKKQQMQWTRTGAHLLLQTRTRTLDGTLRSAFERWYPGMANDNVDHAHQIQVA

 

Blast result :
Comments
ISNov1 is 63% aa (ORFB : transposase) similar to ISAfe13.
ORFA is a passenger gene annotated as plasmid pRiA4b ORF-3-like protein.
References
1] ISfinder annotation (2013)
2] Gan,H.M. (2012) Direct submission GenBank.