ISNov1
- Family ISKra4
- Group ISAzba1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AKFJ01000016 | ND | Novosphingobium sp. | Novosphingobium sp. Rr 2-17 |
DNA section
IS Length : 2277 bp
Ends
IR Length : 26
IRL : GGGGACCATGAGGAAGTGGGGGGTGGGTGCGATCCGGCCTGATATCGTGT
IRR : GGGGACCATGAGGAAGTGGGGGGTGGATCATGCCACCTGAATTTGGTGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGACCAAACT | TGCTCGAGCG | 0 |
DNA sequence
GGGGACCATGAGGAAGTGGGGGGTGGGTGCGATCCGGCCTGATATCGTGTATCCAGGGCTCTGTGAAAAAGCGGATAGCGAGAGGTGGATTGCCCGGTGA
CGAGGCACCGGCGGCGGCGAGCGATGAAGCCGCCGACATCTTGCAGTTCAAGATCTGGTTGAAGGGTTTGAGCCCCATGATTTGGCGCCGGGTTCAGGTG
TCCGAGGACGCAACCCTTCGCGAGTTGCACGGCATTTTTCAGTTGACCATGGGTTGGGAGGGAATTCATCTGTTCTCCTTCGACCTGCGTGCGGTGCGAT
ACGGATCTCATGAACTCGGCATGCGATCACCGGACGAATCACTTGGTGACCTTCAGCTGCGCAAGGGCGCTCGCTTTGCCTATGAATACGACCTCAACAT
TCCATGGGACCATGAGGTGCGGTTGGAAGATCGGTTTCAGATTCAGCCCCGGCGTCATTATCCTTACTGCGTGGACGGACACGGAGCATGCCCGCCGGAA
GATTGCGGTGGGCCGGCAGGATTTCTTGAGCGACGCGACGCGTCATACTCGTGCGAAGCGTTCGACGACCTGACCCGGATGGCCGATTTCATCAACGAGG
TCGTGTTGAAGGAACGCTTTGAACTGCGCAGGGACACCGACCTGATGGAGGAATTGCGCGATGTACTGGAGCGTATGCAGATGCGGGAGGCTTGGAAGGG
GCGCCCGTTTGCTCGAAAGGGGGTCAACGACGCTCTGAAAAAAGGCGAGCACCTCGAACTGATGCATCAACAATGGTAACCATTGCCGCCGTCTCTTACC
CCGACGGCGACCCCAACGGGTTACGTCGATCATTGGGAGAAACGCCATGCAGGTGCGGGTCTTGCTTCAAATCACGCCAGATGACGGCGCGCCAGGCAGT
GTCGATGAAATCGCCGCCTGGGATAAGACAGCCACGGTCGCGGAAGACATCGGTCTCTCCCTCGCCGAAGGCAAGAAGCTGCTCTCCGCCGCCCAGCGCC
GGATTGTCGAGGCTCAAGCTGCAGCATGGGTCGAAGGGCGACGGTGTTGCGACGACTGCGGGCGTCGGGCGATCCTCAAGGGTCGCCATCCGATCGTCTA
CCACACGCTGTTTGGGGATGTGGCGCTGGCGAGCCCGCGCTTCCACCGATGCAGATGTCGTGGCAATATCGGGGCGGCGACGAATTCGCCGCTGGTGACG
ATCATTCCCCACCATGTCGCGCCGGAACGACTGTATCTGGAGGCCCGTTGGGCGTCCCTGGTTCCCTATGCCACTGCGGCCGAGTTACTGGCCGACGTGC
TGCCGATCGCAACCGGCGCCAACGCTACAACGGTCCGACAACACGTCCTGCGCGTCGCCGAACGCCTCGAGGCCGAGCTTCCGGCGGACAAGTGCACGTT
CATGACAGGAGTGCCGGCGGACTGGGCGGATTTGCCGATCCCGGACGGGCGCATTGTGGTCGGTTTGGACGGCGGCTACGTCCGCGACTGGGACGAACGT
AAAACCAATTTCGAGGTCATCGTCGGTCGCTCGATGCCTGAGGACGGCCCGTCACGGTATCTGGGCTTCGTCCATGGCCACGACCGCAAACCCAAGCGCC
GGCTGATCGACGTCTTGGAAAGCCAGGGTGTCCAGGCCAATCAGGACATCACCTTCCTGACCGACGGCGGAAAGGAAATTCTCGCCCTGACGGATCGCAT
CAGCCCCTGCAGCGAGCATGTCCTCGACTGGTTCCACATCACGATGAAGATCACGGTCCTGGGTCAGTTCGTGAAAGGCGTCGCTCATCTCGATGCGCTG
GCCGGCGCCCAACTTGAAGAAGATCTGGCGCGCATAAAATGGAAGCTGTGGCACGGCAATTCGATCGAAGCCCTGGAGCTGATCGATCGGTTTGAAAATG
ACGTCTCCGACATCCGGGCGGACTATCCAAACCTGCGCAAGTTCGAAGTCCTCGCACGGGAGTTTGGCGTGTACATCGCTTCGAACGCCGAGAGCCTGAT
CAACTATGGCGAACGGTATCGCGCCGGAGAACGCATCTCTTCTGCCTTTGTGGAAGCGACCGTCAACGCCGTGGTCAGCAAGCGCTTCGCTAAAAAGCAG
CAGATGCAGTGGACTCGAACAGGAGCACATCTGCTCTTGCAGACACGCACCCGAACCCTGGACGGAACGCTCCGCTCAGCATTCGAGCGATGGTATCCGG
GGATGGCAAACGACAACGTCGATCATGCCCACCAAATTCAGGTGGCATGATCCACCCCCCACTTCCTCATGGTCCCC
CGAGGCACCGGCGGCGGCGAGCGATGAAGCCGCCGACATCTTGCAGTTCAAGATCTGGTTGAAGGGTTTGAGCCCCATGATTTGGCGCCGGGTTCAGGTG
TCCGAGGACGCAACCCTTCGCGAGTTGCACGGCATTTTTCAGTTGACCATGGGTTGGGAGGGAATTCATCTGTTCTCCTTCGACCTGCGTGCGGTGCGAT
ACGGATCTCATGAACTCGGCATGCGATCACCGGACGAATCACTTGGTGACCTTCAGCTGCGCAAGGGCGCTCGCTTTGCCTATGAATACGACCTCAACAT
TCCATGGGACCATGAGGTGCGGTTGGAAGATCGGTTTCAGATTCAGCCCCGGCGTCATTATCCTTACTGCGTGGACGGACACGGAGCATGCCCGCCGGAA
GATTGCGGTGGGCCGGCAGGATTTCTTGAGCGACGCGACGCGTCATACTCGTGCGAAGCGTTCGACGACCTGACCCGGATGGCCGATTTCATCAACGAGG
TCGTGTTGAAGGAACGCTTTGAACTGCGCAGGGACACCGACCTGATGGAGGAATTGCGCGATGTACTGGAGCGTATGCAGATGCGGGAGGCTTGGAAGGG
GCGCCCGTTTGCTCGAAAGGGGGTCAACGACGCTCTGAAAAAAGGCGAGCACCTCGAACTGATGCATCAACAATGGTAACCATTGCCGCCGTCTCTTACC
CCGACGGCGACCCCAACGGGTTACGTCGATCATTGGGAGAAACGCCATGCAGGTGCGGGTCTTGCTTCAAATCACGCCAGATGACGGCGCGCCAGGCAGT
GTCGATGAAATCGCCGCCTGGGATAAGACAGCCACGGTCGCGGAAGACATCGGTCTCTCCCTCGCCGAAGGCAAGAAGCTGCTCTCCGCCGCCCAGCGCC
GGATTGTCGAGGCTCAAGCTGCAGCATGGGTCGAAGGGCGACGGTGTTGCGACGACTGCGGGCGTCGGGCGATCCTCAAGGGTCGCCATCCGATCGTCTA
CCACACGCTGTTTGGGGATGTGGCGCTGGCGAGCCCGCGCTTCCACCGATGCAGATGTCGTGGCAATATCGGGGCGGCGACGAATTCGCCGCTGGTGACG
ATCATTCCCCACCATGTCGCGCCGGAACGACTGTATCTGGAGGCCCGTTGGGCGTCCCTGGTTCCCTATGCCACTGCGGCCGAGTTACTGGCCGACGTGC
TGCCGATCGCAACCGGCGCCAACGCTACAACGGTCCGACAACACGTCCTGCGCGTCGCCGAACGCCTCGAGGCCGAGCTTCCGGCGGACAAGTGCACGTT
CATGACAGGAGTGCCGGCGGACTGGGCGGATTTGCCGATCCCGGACGGGCGCATTGTGGTCGGTTTGGACGGCGGCTACGTCCGCGACTGGGACGAACGT
AAAACCAATTTCGAGGTCATCGTCGGTCGCTCGATGCCTGAGGACGGCCCGTCACGGTATCTGGGCTTCGTCCATGGCCACGACCGCAAACCCAAGCGCC
GGCTGATCGACGTCTTGGAAAGCCAGGGTGTCCAGGCCAATCAGGACATCACCTTCCTGACCGACGGCGGAAAGGAAATTCTCGCCCTGACGGATCGCAT
CAGCCCCTGCAGCGAGCATGTCCTCGACTGGTTCCACATCACGATGAAGATCACGGTCCTGGGTCAGTTCGTGAAAGGCGTCGCTCATCTCGATGCGCTG
GCCGGCGCCCAACTTGAAGAAGATCTGGCGCGCATAAAATGGAAGCTGTGGCACGGCAATTCGATCGAAGCCCTGGAGCTGATCGATCGGTTTGAAAATG
ACGTCTCCGACATCCGGGCGGACTATCCAAACCTGCGCAAGTTCGAAGTCCTCGCACGGGAGTTTGGCGTGTACATCGCTTCGAACGCCGAGAGCCTGAT
CAACTATGGCGAACGGTATCGCGCCGGAGAACGCATCTCTTCTGCCTTTGTGGAAGCGACCGTCAACGCCGTGGTCAGCAAGCGCTTCGCTAAAAAGCAG
CAGATGCAGTGGACTCGAACAGGAGCACATCTGCTCTTGCAGACACGCACCCGAACCCTGGACGGAACGCTCCGCTCAGCATTCGAGCGATGGTATCCGG
GGATGGCAAACGACAACGTCGATCATGCCCACCAAATTCAGGTGGCATGATCCACCCCCCACTTCCTCATGGTCCCC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
753 bp | 250 aa | 27 | 779 | + | No |
Annotation : plasmid pRIA4b ORF-3 family proteinDescription :
ORF sequence :
MRSGLISCIQGSVKKRIARGGLPGDEAPAAASDEAADILQFKIWLKGLSPMIWRRVQVSEDATLRELHGIFQLTMGWEGIHLFSFDLRAVRYGSHELGMR
SPDESLGDLQLRKGARFAYEYDLNIPWDHEVRLEDRFQIQPRRHYPYCVDGHGACPPEDCGGPAGFLERRDASYSCEAFDDLTRMADFINEVVLKERFEL
RRDTDLMEELRDVLERMQMREAWKGRPFARKGVNDALKKGEHLELMHQQW
SPDESLGDLQLRKGARFAYEYDLNIPWDHEVRLEDRFQIQPRRHYPYCVDGHGACPPEDCGGPAGFLERRDASYSCEAFDDLTRMADFINEVVLKERFEL
RRDTDLMEELRDVLERMQMREAWKGRPFARKGVNDALKKGEHLELMHQQW
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1404 bp | 467 aa | 847 | 2250 | + | No |
Chemistry : DDE
ORF sequence :
MQVRVLLQITPDDGAPGSVDEIAAWDKTATVAEDIGLSLAEGKKLLSAAQRRIVEAQAAAWVEGRRCCDDCGRRAILKGRHPIVYHTLFGDVALASPRFH
RCRCRGNIGAATNSPLVTIIPHHVAPERLYLEARWASLVPYATAAELLADVLPIATGANATTVRQHVLRVAERLEAELPADKCTFMTGVPADWADLPIPD
GRIVVGLDGGYVRDWDERKTNFEVIVGRSMPEDGPSRYLGFVHGHDRKPKRRLIDVLESQGVQANQDITFLTDGGKEILALTDRISPCSEHVLDWFHITM
KITVLGQFVKGVAHLDALAGAQLEEDLARIKWKLWHGNSIEALELIDRFENDVSDIRADYPNLRKFEVLAREFGVYIASNAESLINYGERYRAGERISSA
FVEATVNAVVSKRFAKKQQMQWTRTGAHLLLQTRTRTLDGTLRSAFERWYPGMANDNVDHAHQIQVA
RCRCRGNIGAATNSPLVTIIPHHVAPERLYLEARWASLVPYATAAELLADVLPIATGANATTVRQHVLRVAERLEAELPADKCTFMTGVPADWADLPIPD
GRIVVGLDGGYVRDWDERKTNFEVIVGRSMPEDGPSRYLGFVHGHDRKPKRRLIDVLESQGVQANQDITFLTDGGKEILALTDRISPCSEHVLDWFHITM
KITVLGQFVKGVAHLDALAGAQLEEDLARIKWKLWHGNSIEALELIDRFENDVSDIRADYPNLRKFEVLAREFGVYIASNAESLINYGERYRAGERISSA
FVEATVNAVVSKRFAKKQQMQWTRTGAHLLLQTRTRTLDGTLRSAFERWYPGMANDNVDHAHQIQVA
Blast result :
Comments
ISNov1 is 63% aa (ORFB : transposase) similar to ISAfe13.
ORFA is a passenger gene annotated as plasmid pRiA4b ORF-3-like protein.
ORFA is a passenger gene annotated as plasmid pRiA4b ORF-3-like protein.
References
1] ISfinder annotation (2013)
2] Gan,H.M. (2012) Direct submission GenBank.
2] Gan,H.M. (2012) Direct submission GenBank.