ISCot1
- Family ISKra4
- Group ISAzba1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AEWF01000011 | ND | Candidatus Odyssella | Candidatus Odyssella thessalonicensis L13 HMO |
DNA section
IS Length : 2802 bp
Ends
IR Length : 25
IRL : GAGACCATCCCAAAGTTGGGGGTCACATTGATTTTGTTAAGTTTCCAGGT
IRR : GAGACCATCCCAAAGTTGGGGGTCATGCCGCTAAAGGTTGAGGAATATTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGTAGATAG | AAATATATT | 0 |
DNA sequence
GAGACCATCCCAAAGTTGGGGGTCACATTGATTTTGTTAAGTTTCCAGGTTTCGATATATAGTTGATGGGTGGGTATTCAAAGTTTTAGCTATACTCTTA
ATGGACTCACCTTCCGAGAGTAGACGTTTCATCAGGCTCTTTTGTTCTGAGTTGAGCTTAGAGGGACGCCCGAACTTAACACCTCTTTTTTTCGCTAAAG
AGCGACCAGTACTCGTCCGCTCTTTAATTAATTCCCTTTCAAATTCAGCAATGCCTGTAAATACCGTCATCACCATACGACCGGCATGAGATGTTGTATC
AGCCCATGGTTCACACAGTGAGCGAAAATGAGCCCCTACGTGATGGAGTTTGTCAGTTATTTCAAGTAGATTTCTTGTAGAGCGAGCTAATCGATCCAAG
CGCCATACAATAATAGTGTCATTTTCCCGTAATTGCTCCAGCATTTTTTCTAGCTCAGGTCTTTTCATATGAGCTCCTGAAACTTTTTCCTGGTAAATTT
TTTTACACCCTGCTTCCTTTAACACCTGGAGCTGAAAGGTTAAATCTTGGTCGTCAGTAGAAACCCGTGCATATCCAATTTTCATAAAGCCCTCTAGGAG
AAATTTTCTTTGCAAAACATATAGCAAAATATTTTACTTCTGCATATGGTTTTTGCAATGAGAAAGGATCAGTACTTTCCTAACTCCATCCTGTTATTGC
AAAAGTTACAATTTTTGCGAACTTAAAAAGGAACTCTCATCAATGACCCCACAGTCCCCTATAGAGGTTTATCAGTTTAAATTTTTTCTTAAAGGGATTA
GCCCTATGATTTGGAGACGAATTCTAGTGAAGAGCAATAGTAGCCTTGCAGATCTTCATTATGCTATCCAAATTACTATGGGGTGGAGCGATACACATCT
TCATCAATTTGATATTTGGGGAAAACAATATGGTCTTTCTTATGACGGAGGAATCATTTTCCCTGATAAAGCCAGAGAAGTTTATTTACAACATTTCCAA
TTTCGAGTTAACGAAAAATTTATCTATAAATATAATTTCTTCGCTCCTTGGGAACATGAAATTCGCCTTGAAAAGAAGCTATTACTTGATTCTAAAAAAA
CATATCCACTTTGCATTGCTGGCAATTACGTTAGCCCTCCTGAAGACTGCGGGGGCCCTAAGGCTTTCATGGAATTGATAGACTATTATTCTGTCTGGAG
AATTGAAGAAGAAATCTTAGAGGCATTAGAAGAGTATGAAGCTGAAAGAGATCCTGCTTCTTTTAAAGAAACCTTGGAAAATCTTCAATACTGGGCAAGC
CGCCACAAATTTGACCGTAAAAAAATTAATCGACAACTACAGCGTTATTTCAACAACCCAAGCAATAATCAATTAACACTGGAGGAGATTCAAGATGAAG
ATTAAAATCCAATTTATCATTGATAGTGAAGACCAAAGCTCAACAGAAGTTATAGCCTGCATTGAGAGAGAAGAATTAACAGCTGAAACTTTAGGATTAA
CTCTACAAGAGGCTAAGACGATTACCTCTGAAATTCAGAAAAAGATGATAGGTCATCAAATAACAGACTTTGTTTCTCATAACCGTTTTTGCCTATGTTG
CGGTTCAACCCTCTCTATTAAGGGGTACCATCCTTTAGTTTATAGGACTCTTTTTGGTAAGATTTGTCTAAGAAGCCCGAGGCTTTTTTCTTGCCGATGC
CAATCTCAGCAATCCTCAACCTTTAGCCCTTTGGTTCAGCTCTTAACAGAACACGTGTCACCTGAACTAAGTTATTTGGAGTCAAAATGGGCGTCATTGA
TGTCGTATGGATTGGCTGCTAAGCTTCTAAAAGAGGTATTCCCTGTGGAAATTTATCCTTCTTCGGTATACCGCATTACCTCCAAAGTAGCCAACCGCTT
AGAACAAGAATTAGGCGAAGAAAAAGCTATGTTCATTAAGGGATGCCAGCGGGATTGGAATCAACTGCCCCGGCCAGATACCCCTATTACCGTTAGCCTT
GATGGAGGGTACGTACATGCAAGGAAAGGAAATAACCGTAAGGCTGGGTGGTTTGAGGTTATTGTTGGTAAAAGCTTGCAAGAAGGTCATCAACCAAGAA
GGTTTGGTTATGTTGTTAATTATGATCAAAAGCCAAAACGTCGGTTGTATGAAATGCTTGAAAAACAAGGATTACAATTGAATCAAGATATTACTTTCCT
AACTGATGGTGGCGATACAGTGCGAGGTCTACCTCTTTATCTAAGTCCTCGATCAGAGCATATTTTAGATTGGTTTCATGTGACCATGCGGATGACTGTT
ATAAAACAAATTTCAAAGGGAGCTATGGGCAAAGACTATGCGAACTTTGAAAAACAGCTATTAAGGACAAAGTGGTTTCTTTGGCATGGGAATATCTATC
AGTCCTTGGATATCTTGGAATCTTTAATAATGGATTTAGACTTATATTCCGAAAATAAAGCACACAAAAAATATAAGCTTTGGCGGGTTGTCAGTGAGTT
TTATCAGTATATTCAATCAAATAGTCACTTCATTCCCAATTATGGGGAACGTTATCGTTACGGTGAATCAGTCTCCTCAGCTTGCGCTGAATCAGCAGTC
AATGAGCTGATTAGCAAGAGGATGGCTAAAAGCCAACAAATGAGATGGACACAGAAAGGAGCTCATCTACTGCTTCAAGTCCGTTCGAAGACCCTAAATG
GTGACTTAATAAAATCCTTTAAACAATGGTACCCAAAAATGGATGATGCCCATAATATTCCTCAACCTTTAGCGGCATGACCCCCAACTTTGGGATGGTC
TC
ATGGACTCACCTTCCGAGAGTAGACGTTTCATCAGGCTCTTTTGTTCTGAGTTGAGCTTAGAGGGACGCCCGAACTTAACACCTCTTTTTTTCGCTAAAG
AGCGACCAGTACTCGTCCGCTCTTTAATTAATTCCCTTTCAAATTCAGCAATGCCTGTAAATACCGTCATCACCATACGACCGGCATGAGATGTTGTATC
AGCCCATGGTTCACACAGTGAGCGAAAATGAGCCCCTACGTGATGGAGTTTGTCAGTTATTTCAAGTAGATTTCTTGTAGAGCGAGCTAATCGATCCAAG
CGCCATACAATAATAGTGTCATTTTCCCGTAATTGCTCCAGCATTTTTTCTAGCTCAGGTCTTTTCATATGAGCTCCTGAAACTTTTTCCTGGTAAATTT
TTTTACACCCTGCTTCCTTTAACACCTGGAGCTGAAAGGTTAAATCTTGGTCGTCAGTAGAAACCCGTGCATATCCAATTTTCATAAAGCCCTCTAGGAG
AAATTTTCTTTGCAAAACATATAGCAAAATATTTTACTTCTGCATATGGTTTTTGCAATGAGAAAGGATCAGTACTTTCCTAACTCCATCCTGTTATTGC
AAAAGTTACAATTTTTGCGAACTTAAAAAGGAACTCTCATCAATGACCCCACAGTCCCCTATAGAGGTTTATCAGTTTAAATTTTTTCTTAAAGGGATTA
GCCCTATGATTTGGAGACGAATTCTAGTGAAGAGCAATAGTAGCCTTGCAGATCTTCATTATGCTATCCAAATTACTATGGGGTGGAGCGATACACATCT
TCATCAATTTGATATTTGGGGAAAACAATATGGTCTTTCTTATGACGGAGGAATCATTTTCCCTGATAAAGCCAGAGAAGTTTATTTACAACATTTCCAA
TTTCGAGTTAACGAAAAATTTATCTATAAATATAATTTCTTCGCTCCTTGGGAACATGAAATTCGCCTTGAAAAGAAGCTATTACTTGATTCTAAAAAAA
CATATCCACTTTGCATTGCTGGCAATTACGTTAGCCCTCCTGAAGACTGCGGGGGCCCTAAGGCTTTCATGGAATTGATAGACTATTATTCTGTCTGGAG
AATTGAAGAAGAAATCTTAGAGGCATTAGAAGAGTATGAAGCTGAAAGAGATCCTGCTTCTTTTAAAGAAACCTTGGAAAATCTTCAATACTGGGCAAGC
CGCCACAAATTTGACCGTAAAAAAATTAATCGACAACTACAGCGTTATTTCAACAACCCAAGCAATAATCAATTAACACTGGAGGAGATTCAAGATGAAG
ATTAAAATCCAATTTATCATTGATAGTGAAGACCAAAGCTCAACAGAAGTTATAGCCTGCATTGAGAGAGAAGAATTAACAGCTGAAACTTTAGGATTAA
CTCTACAAGAGGCTAAGACGATTACCTCTGAAATTCAGAAAAAGATGATAGGTCATCAAATAACAGACTTTGTTTCTCATAACCGTTTTTGCCTATGTTG
CGGTTCAACCCTCTCTATTAAGGGGTACCATCCTTTAGTTTATAGGACTCTTTTTGGTAAGATTTGTCTAAGAAGCCCGAGGCTTTTTTCTTGCCGATGC
CAATCTCAGCAATCCTCAACCTTTAGCCCTTTGGTTCAGCTCTTAACAGAACACGTGTCACCTGAACTAAGTTATTTGGAGTCAAAATGGGCGTCATTGA
TGTCGTATGGATTGGCTGCTAAGCTTCTAAAAGAGGTATTCCCTGTGGAAATTTATCCTTCTTCGGTATACCGCATTACCTCCAAAGTAGCCAACCGCTT
AGAACAAGAATTAGGCGAAGAAAAAGCTATGTTCATTAAGGGATGCCAGCGGGATTGGAATCAACTGCCCCGGCCAGATACCCCTATTACCGTTAGCCTT
GATGGAGGGTACGTACATGCAAGGAAAGGAAATAACCGTAAGGCTGGGTGGTTTGAGGTTATTGTTGGTAAAAGCTTGCAAGAAGGTCATCAACCAAGAA
GGTTTGGTTATGTTGTTAATTATGATCAAAAGCCAAAACGTCGGTTGTATGAAATGCTTGAAAAACAAGGATTACAATTGAATCAAGATATTACTTTCCT
AACTGATGGTGGCGATACAGTGCGAGGTCTACCTCTTTATCTAAGTCCTCGATCAGAGCATATTTTAGATTGGTTTCATGTGACCATGCGGATGACTGTT
ATAAAACAAATTTCAAAGGGAGCTATGGGCAAAGACTATGCGAACTTTGAAAAACAGCTATTAAGGACAAAGTGGTTTCTTTGGCATGGGAATATCTATC
AGTCCTTGGATATCTTGGAATCTTTAATAATGGATTTAGACTTATATTCCGAAAATAAAGCACACAAAAAATATAAGCTTTGGCGGGTTGTCAGTGAGTT
TTATCAGTATATTCAATCAAATAGTCACTTCATTCCCAATTATGGGGAACGTTATCGTTACGGTGAATCAGTCTCCTCAGCTTGCGCTGAATCAGCAGTC
AATGAGCTGATTAGCAAGAGGATGGCTAAAAGCCAACAAATGAGATGGACACAGAAAGGAGCTCATCTACTGCTTCAAGTCCGTTCGAAGACCCTAAATG
GTGACTTAATAAAATCCTTTAAACAATGGTACCCAAAAATGGATGATGCCCATAATATTCCTCAACCTTTAGCGGCATGACCCCCAACTTTGGGATGGTC
TC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
549 bp | 181 aa | 585 | 37 | - | No |
Annotation : Serine recombinaseDescription :
ORF sequence :
MKIGYARVSTDDQDLTFQLQVLKEAGCKKIYQEKVSGAHMKRPELEKMLEQLRENDTIIVWRLDRLARSTRNLLEITDKLHHVGAHFRSLCEPWADTTSH
AGRMVMTVFTGIAEFERELIKERTSTGRSLAKKRGVKFGRPSKLNSEQKSLMKRLLSEGESIKSIAKTLNTHPSTIYRNLE
AGRMVMTVFTGIAEFERELIKERTSTGRSLAKKRGVKFGRPSKLNSEQKSLMKRLLSEGESIKSIAKTLNTHPSTIYRNLE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
663 bp | 220 aa | 743 | 1405 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MTPQSPIEVYQFKFFLKGISPMIWRRILVKSNSSLADLHYAIQITMGWSDTHLHQFDIWGKQYGLSYDGGIIFPDKAREVYLQHFQFRVNEKFIYKYNFF
APWEHEIRLEKKLLLDSKKTYPLCIAGNYVSPPEDCGGPKAFMELIDYYSVWRIEEEILEALEEYEAERDPASFKETLENLQYWASRHKFDRKKINRQLQ
RYFNNPSNNQLTLEEIQDED
APWEHEIRLEKKLLLDSKKTYPLCIAGNYVSPPEDCGGPKAFMELIDYYSVWRIEEEILEALEEYEAERDPASFKETLENLQYWASRHKFDRKKINRQLQ
RYFNNPSNNQLTLEEIQDED
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1386 bp | 461 aa | 1395 | 2780 | + | No |
Chemistry : DDE
ORF sequence :
MKIKIQFIIDSEDQSSTEVIACIEREELTAETLGLTLQEAKTITSEIQKKMIGHQITDFVSHNRFCLCCGSTLSIKGYHPLVYRTLFGKICLRSPRLFSC
RCQSQQSSTFSPLVQLLTEHVSPELSYLESKWASLMSYGLAAKLLKEVFPVEIYPSSVYRITSKVANRLEQELGEEKAMFIKGCQRDWNQLPRPDTPITV
SLDGGYVHARKGNNRKAGWFEVIVGKSLQEGHQPRRFGYVVNYDQKPKRRLYEMLEKQGLQLNQDITFLTDGGDTVRGLPLYLSPRSEHILDWFHVTMRM
TVIKQISKGAMGKDYANFEKQLLRTKWFLWHGNIYQSLDILESLIMDLDLYSENKAHKKYKLWRVVSEFYQYIQSNSHFIPNYGERYRYGESVSSACAES
AVNELISKRMAKSQQMRWTQKGAHLLLQVRSKTLNGDLIKSFKQWYPKMDDAHNIPQPLAA
RCQSQQSSTFSPLVQLLTEHVSPELSYLESKWASLMSYGLAAKLLKEVFPVEIYPSSVYRITSKVANRLEQELGEEKAMFIKGCQRDWNQLPRPDTPITV
SLDGGYVHARKGNNRKAGWFEVIVGKSLQEGHQPRRFGYVVNYDQKPKRRLYEMLEKQGLQLNQDITFLTDGGDTVRGLPLYLSPRSEHILDWFHVTMRM
TVIKQISKGAMGKDYANFEKQLLRTKWFLWHGNIYQSLDILESLIMDLDLYSENKAHKKYKLWRVVSEFYQYIQSNSHFIPNYGERYRYGESVSSACAES
AVNELISKRMAKSQQMRWTQKGAHLLLQVRSKTLNGDLIKSFKQWYPKMDDAHNIPQPLAA
Blast result :
Comments
ISCot1 is 63% aa (ORFC : the transposase) similar to ISAzs26.
ORFA and ORFB are passenger gene respectively annotated as resolvase family site-specific recombinase and hypothetical protein.
ORFA and ORFB are passenger gene respectively annotated as resolvase family site-specific recombinase and hypothetical protein.
References
1] ISfinder annotation (2013)
2] Kalliopi,G., Madoui,M.-A., Le,P., Robert,C. and Raoult,D. (2011) Direct submission GenBank.
2] Kalliopi,G., Madoui,M.-A., Le,P., Robert,C. and Raoult,D. (2011) Direct submission GenBank.