ISDere1

  • Family ISKra4
  • Group ISKra4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_013223 ND Desulfohalobium retbaense
Desulfohalobium retbaense DSM 5692
DNA section
IS Length : 1553 bp

Ends


IR Length : 19/22

IRL : GGGTGCATTCGGTAGCTGCGACCGTTTTTAAAAAGTCAAATTGCCAAATA
IRR : GGGTGCATTCGCTACTTGCGACGACCCCCTTGACAAAGCGACAAGTGGGG

Insertion site


Left flankDirect repeatRight flankDR Length
TTATGAAGGACTTGCGGGAAATGACGCA8
CGGCCAGGCTCTTTTGGAGG0

DNA sequence

GGGTGCATTCGGTAGCTGCGACCGTTTTTAAAAAGTCAAATTGCCAAATAAGCAACTGTTATTTATTGAAAAGTTTCGGTAAATACTGTAATATCTCCGC
AAATCTACCGGAGGTATTACCATGCAGACTGCTCTAAATCAGAGTGATATTTATAAAGAACGTGCTCATCGGAAGTACTTTAGCGATATGAAAGAATTAT
TTGACAACGTATACGATATAATTGACGTACCCGGGCTGTCACTTTTTGAAAATATTGAAAAACTCTGTGAGCATAAGCTATACAATCTCGATCCAAAAAT
GCTGTCTGCGATCATTGAGACCAAGCTAGAGCATTACTTTTCTGGCTTCGAATGCCCTCTATGTGGTTGCAAGTGTTCTCATAATAAAAAATCAAAGAGA
CATATCGAAACCACTTACGGAACCGTATCATTTGATTCACCTTATTATAAATGCAAAAACTGCGATAAATTTTATGAACCGTACGTCTCTGCGTTGAACC
TTCGAAAGGGAAAGTACCAATACGACGTCCAAAAAATTGTCGCCAAAGTGGCCTCGTCGGTGCCTTTCGATGAAACAGCGGAAATCTTGTACGATACGCA
TGGCCTTTCCCTCTCCCAGGCTACAGTTCATGAGTTGACCAATGAACTAGCCGCCCATGCTCGACTTGAAGAGATCAGCCCAGAAGCAGCAACTATCCAT
GAGATTATCGAACAGGCTACCCGCCCCAATAAAGCCAGGCCGGTGCTTGTTTTCGCCGCAGATGGAGCCATGTCCCCAACTCGAACAGAAAAAGGCAAAC
CCAATGCGTGGAAAGAGGCCAAAGGTATACGGGTCTACTTGCTTGATGGGCAGCATTTAGCCCAAGTGCTGAGTTGGCATCAGATATGCGACAAACACCG
CTTCAAATCCTTTTTGCAGCAGATTAAACAGCAAAACCTTTTCCCGGAAGACAAAGTTCGGATCTGCTGTATAGGCGACGGAGCCGGGTGGATATGGGAG
GCGATGGAAGAGGCTTTTCCAGACGCACGGCAAATTTTGGATTATTACCATTGCCAAGAACATATCCACGAATTTGCCAACGCCCGCTTTGCTGACAAGG
CAGCCCGGGACAAGTGGCTGCGTGAAACGACAAATCGGCTCTTTCAAAATAAACTGAGCAGTGTTCTCGCTGGATTGAGGCGAATGAAGCTCACCGGCGA
GGCAGCAGAGAAGCGAGACGCTCTGTGCTCGTATTTGTCAAAGAACAAGGACCGCATGGATTACGGGAAAGCCAAGCGGGGCGGCTATCCTCTGGGCAGC
GGGGCCATAGAAAGCGCTAACAAATTTATAAGCCACATACGGCTCAAACGCTCAGGAGCCTGGTGGAAAGTCGACCTGGCTAACAATATCCTGGCCTTGC
GCTGTTCGAGGTACAACAAATCCTTCGATCGCTTCTTTGCCGCCTATGAAAAAAGCCAGCGGCAGGACTTAGGGTCGGCTCAGCCCCACTTGTCGCTTTG
TCAAGGGGGTCGTCGCAAGTAGCGAATGCACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1401 bp466 aa1221522+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQTALNQSDIYKERAHRKYFSDMKELFDNVYDIIDVPGLSLFENIEKLCEHKLYNLDPKMLSAIIETKLEHYFSGFECPLCGCKCSHNKKSKRHIETTYG
TVSFDSPYYKCKNCDKFYEPYVSALNLRKGKYQYDVQKIVAKVASSVPFDETAEILYDTHGLSLSQATVHELTNELAAHARLEEISPEAATIHEIIEQAT
RPNKARPVLVFAADGAMSPTRTEKGKPNAWKEAKGIRVYLLDGQHLAQVLSWHQICDKHRFKSFLQQIKQQNLFPEDKVRICCIGDGAGWIWEAMEEAFP
DARQILDYYHCQEHIHEFANARFADKAARDKWLRETTNRLFQNKLSSVLAGLRRMKLTGEAAEKRDALCSYLSKNKDRMDYGKAKRGGYPLGSGAIESAN
KFISHIRLKRSGAWWKVDLANNILALRCSRYNKSFDRFFAAYEKSQRQDLGSAQPHLSLCQGGRRK

 

Blast result :
Comments
ISDere1 is 40% aa similar to ISLfe1.
References