ISDere1
- Family ISKra4
- Group ISKra4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_013223 | ND | Desulfohalobium retbaense | Desulfohalobium retbaense DSM 5692 |
DNA section
IS Length : 1553 bp
Ends
IR Length : 19/22
IRL : GGGTGCATTCGGTAGCTGCGACCGTTTTTAAAAAGTCAAATTGCCAAATA
IRR : GGGTGCATTCGCTACTTGCGACGACCCCCTTGACAAAGCGACAAGTGGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTATGAAGGA | CTTGCGGG | AAATGACGCA | 8 |
CGGCCAGGCT | CTTTTGGAGG | 0 |
DNA sequence
GGGTGCATTCGGTAGCTGCGACCGTTTTTAAAAAGTCAAATTGCCAAATAAGCAACTGTTATTTATTGAAAAGTTTCGGTAAATACTGTAATATCTCCGC
AAATCTACCGGAGGTATTACCATGCAGACTGCTCTAAATCAGAGTGATATTTATAAAGAACGTGCTCATCGGAAGTACTTTAGCGATATGAAAGAATTAT
TTGACAACGTATACGATATAATTGACGTACCCGGGCTGTCACTTTTTGAAAATATTGAAAAACTCTGTGAGCATAAGCTATACAATCTCGATCCAAAAAT
GCTGTCTGCGATCATTGAGACCAAGCTAGAGCATTACTTTTCTGGCTTCGAATGCCCTCTATGTGGTTGCAAGTGTTCTCATAATAAAAAATCAAAGAGA
CATATCGAAACCACTTACGGAACCGTATCATTTGATTCACCTTATTATAAATGCAAAAACTGCGATAAATTTTATGAACCGTACGTCTCTGCGTTGAACC
TTCGAAAGGGAAAGTACCAATACGACGTCCAAAAAATTGTCGCCAAAGTGGCCTCGTCGGTGCCTTTCGATGAAACAGCGGAAATCTTGTACGATACGCA
TGGCCTTTCCCTCTCCCAGGCTACAGTTCATGAGTTGACCAATGAACTAGCCGCCCATGCTCGACTTGAAGAGATCAGCCCAGAAGCAGCAACTATCCAT
GAGATTATCGAACAGGCTACCCGCCCCAATAAAGCCAGGCCGGTGCTTGTTTTCGCCGCAGATGGAGCCATGTCCCCAACTCGAACAGAAAAAGGCAAAC
CCAATGCGTGGAAAGAGGCCAAAGGTATACGGGTCTACTTGCTTGATGGGCAGCATTTAGCCCAAGTGCTGAGTTGGCATCAGATATGCGACAAACACCG
CTTCAAATCCTTTTTGCAGCAGATTAAACAGCAAAACCTTTTCCCGGAAGACAAAGTTCGGATCTGCTGTATAGGCGACGGAGCCGGGTGGATATGGGAG
GCGATGGAAGAGGCTTTTCCAGACGCACGGCAAATTTTGGATTATTACCATTGCCAAGAACATATCCACGAATTTGCCAACGCCCGCTTTGCTGACAAGG
CAGCCCGGGACAAGTGGCTGCGTGAAACGACAAATCGGCTCTTTCAAAATAAACTGAGCAGTGTTCTCGCTGGATTGAGGCGAATGAAGCTCACCGGCGA
GGCAGCAGAGAAGCGAGACGCTCTGTGCTCGTATTTGTCAAAGAACAAGGACCGCATGGATTACGGGAAAGCCAAGCGGGGCGGCTATCCTCTGGGCAGC
GGGGCCATAGAAAGCGCTAACAAATTTATAAGCCACATACGGCTCAAACGCTCAGGAGCCTGGTGGAAAGTCGACCTGGCTAACAATATCCTGGCCTTGC
GCTGTTCGAGGTACAACAAATCCTTCGATCGCTTCTTTGCCGCCTATGAAAAAAGCCAGCGGCAGGACTTAGGGTCGGCTCAGCCCCACTTGTCGCTTTG
TCAAGGGGGTCGTCGCAAGTAGCGAATGCACCC
AAATCTACCGGAGGTATTACCATGCAGACTGCTCTAAATCAGAGTGATATTTATAAAGAACGTGCTCATCGGAAGTACTTTAGCGATATGAAAGAATTAT
TTGACAACGTATACGATATAATTGACGTACCCGGGCTGTCACTTTTTGAAAATATTGAAAAACTCTGTGAGCATAAGCTATACAATCTCGATCCAAAAAT
GCTGTCTGCGATCATTGAGACCAAGCTAGAGCATTACTTTTCTGGCTTCGAATGCCCTCTATGTGGTTGCAAGTGTTCTCATAATAAAAAATCAAAGAGA
CATATCGAAACCACTTACGGAACCGTATCATTTGATTCACCTTATTATAAATGCAAAAACTGCGATAAATTTTATGAACCGTACGTCTCTGCGTTGAACC
TTCGAAAGGGAAAGTACCAATACGACGTCCAAAAAATTGTCGCCAAAGTGGCCTCGTCGGTGCCTTTCGATGAAACAGCGGAAATCTTGTACGATACGCA
TGGCCTTTCCCTCTCCCAGGCTACAGTTCATGAGTTGACCAATGAACTAGCCGCCCATGCTCGACTTGAAGAGATCAGCCCAGAAGCAGCAACTATCCAT
GAGATTATCGAACAGGCTACCCGCCCCAATAAAGCCAGGCCGGTGCTTGTTTTCGCCGCAGATGGAGCCATGTCCCCAACTCGAACAGAAAAAGGCAAAC
CCAATGCGTGGAAAGAGGCCAAAGGTATACGGGTCTACTTGCTTGATGGGCAGCATTTAGCCCAAGTGCTGAGTTGGCATCAGATATGCGACAAACACCG
CTTCAAATCCTTTTTGCAGCAGATTAAACAGCAAAACCTTTTCCCGGAAGACAAAGTTCGGATCTGCTGTATAGGCGACGGAGCCGGGTGGATATGGGAG
GCGATGGAAGAGGCTTTTCCAGACGCACGGCAAATTTTGGATTATTACCATTGCCAAGAACATATCCACGAATTTGCCAACGCCCGCTTTGCTGACAAGG
CAGCCCGGGACAAGTGGCTGCGTGAAACGACAAATCGGCTCTTTCAAAATAAACTGAGCAGTGTTCTCGCTGGATTGAGGCGAATGAAGCTCACCGGCGA
GGCAGCAGAGAAGCGAGACGCTCTGTGCTCGTATTTGTCAAAGAACAAGGACCGCATGGATTACGGGAAAGCCAAGCGGGGCGGCTATCCTCTGGGCAGC
GGGGCCATAGAAAGCGCTAACAAATTTATAAGCCACATACGGCTCAAACGCTCAGGAGCCTGGTGGAAAGTCGACCTGGCTAACAATATCCTGGCCTTGC
GCTGTTCGAGGTACAACAAATCCTTCGATCGCTTCTTTGCCGCCTATGAAAAAAGCCAGCGGCAGGACTTAGGGTCGGCTCAGCCCCACTTGTCGCTTTG
TCAAGGGGGTCGTCGCAAGTAGCGAATGCACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1401 bp | 466 aa | 122 | 1522 | + | No |
Chemistry : DDE
ORF sequence :
MQTALNQSDIYKERAHRKYFSDMKELFDNVYDIIDVPGLSLFENIEKLCEHKLYNLDPKMLSAIIETKLEHYFSGFECPLCGCKCSHNKKSKRHIETTYG
TVSFDSPYYKCKNCDKFYEPYVSALNLRKGKYQYDVQKIVAKVASSVPFDETAEILYDTHGLSLSQATVHELTNELAAHARLEEISPEAATIHEIIEQAT
RPNKARPVLVFAADGAMSPTRTEKGKPNAWKEAKGIRVYLLDGQHLAQVLSWHQICDKHRFKSFLQQIKQQNLFPEDKVRICCIGDGAGWIWEAMEEAFP
DARQILDYYHCQEHIHEFANARFADKAARDKWLRETTNRLFQNKLSSVLAGLRRMKLTGEAAEKRDALCSYLSKNKDRMDYGKAKRGGYPLGSGAIESAN
KFISHIRLKRSGAWWKVDLANNILALRCSRYNKSFDRFFAAYEKSQRQDLGSAQPHLSLCQGGRRK
TVSFDSPYYKCKNCDKFYEPYVSALNLRKGKYQYDVQKIVAKVASSVPFDETAEILYDTHGLSLSQATVHELTNELAAHARLEEISPEAATIHEIIEQAT
RPNKARPVLVFAADGAMSPTRTEKGKPNAWKEAKGIRVYLLDGQHLAQVLSWHQICDKHRFKSFLQQIKQQNLFPEDKVRICCIGDGAGWIWEAMEEAFP
DARQILDYYHCQEHIHEFANARFADKAARDKWLRETTNRLFQNKLSSVLAGLRRMKLTGEAAEKRDALCSYLSKNKDRMDYGKAKRGGYPLGSGAIESAN
KFISHIRLKRSGAWWKVDLANNILALRCSRYNKSFDRFFAAYEKSQRQDLGSAQPHLSLCQGGRRK
Blast result :
Comments
ISDere1 is 40% aa similar to ISLfe1.
References