ISMfu2
- Family ISKra4
- Group ISKra4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_015711 | ND | Myxococcus fulvus | Myxococcus fulvus HW-1 |
DNA section
IS Length : 1554 bp
Ends
IR Length : 17/22
IRL : GGGTCTGGATCCGATCCTGAGCGCTGGGTGAGCTAACAAGCCATCGAGCG
IRR : GGGTGTGGCTCCCATACTGATCATGCTGCGCGCCGTACCTCGGCCCTCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCCGAGCCT | CCTCATCC | GCTCCTATGG | 8 |
GCAGAAAAGA | GGGAGGAGG | AGGGAGGG GGGG | 9 |
ACGGCAGAGA | GGCTCTGG | AGTGGTGCTT | 8 |
DNA sequence
GGGTCTGGATCCGATCCTGAGCGCTGGGTGAGCTAACAAGCCATCGAGCGGTCGCGAGCCTGTTCATCGGCAAGGTGCGAGCCTTCGGGTGGGTTATCTC
GACGGAGGTGTGCGCGTGTCGAAGGTGATGCTTGAGGTACCCGAGGAAGTCGCGAAGTTGCTCAAAGTCATGGAGGCGAAGCTGCGGCAGGAGGGCGCGG
CGGGGAAAAGCTTCGGGGAAGTGGACCCGGAAGGCGCGTTGAAGGCCATTGATGAGGCGGCCGCGGCGTTGCAGTGCGATGCGAAGCGGAGGTTGCTTCA
AGGCTACGACGTCGACGCCCCCCGTCTCCAACTCGCAGGCCAGCTCCACTCCCGGGTCGGCCGGTACACGGCGACGTACAAGACGCGGCAAGGGCCTGTC
GAAGTAGAGCGAAGCCTCTATCGACAGGTAGGGGTGAGAAACGGGCCCACGGTGGACACCGTCAGCCTGCGCGCTGGGTGCGTGGCCGATGGGTGGATGC
CCGAGGCGGCAGTGCCCATGGCGTACCTGCTGGCCCGGGGGACCTCGCGAGAGGCGGAAGCGACGGCGCGCCAGATGGGCGTGCTGCCCTACTGCCGAGC
CTCGTTCGAGCGGGTGGGGCATGAGGTGGGAGCGCTGTACGGCGGCCAGCGGTCTCGGGTGGAGGTGGTGCTGGCCCAGGAGATGCAAGTGCCCCGAGGC
ACCCGCGGCGTGAGCGTCAGCATGGACAGGGTGGCCGTGCCGATGGAGGAGCCGAAGAAGCGGCCGGTGGGCCGCCCTCGCAAGGGCGCCCCCACGCGCC
CGGTGGACGTCGTCTGGCGCATGGCCTACGCCGCCTGCCTCACCTTCCATGATGCCCACGGCGAAGCCCTGGGCACCATCCGCTACGGACGGATGCCACG
GGGCGAGGCCCGAGAGGTGGCAGAACGCCTGGCCCGCGACGTCCAGGCCCTGGTTTCCAGGCGGCGCGGCCTGTACGTCGCCGTCCTCACCGACGGTGCC
CCTGAGTTGCACGCCTTGCTGGACGAGGCGCTGGCCACCCATGCCCCGGCGGCCAAGAAGCCGGTGCGTCTGGTGGACTTCTGGCACCTGATGGAGAAGC
TCGGGGCTGCGGCTCGCGTGGTGGCTGGAGAAGAGACGGCCTCCGCGCTGCGTGAGAAATGGAAGCTGTCCCTGCTCAACACGCCCGGGGCGGCGTGGGC
CATTGCCATGGCGTTGCACGCCAGCGGCAAGCGGCATGTCGTCCTCGGTGACGGCAAACCGGTGCACGAGGCCCTCACCTACCTGGAGAACCACGGCGAA
CGAATGCACTATGCCGAGGCGCGCGCACGGGGACTTCCCATTGGCAGCGGCAACGTGGAGGCTACCTGCAAGTCTCTCGTCTCCCTGCGCATGAAGCGCC
CTGGCGCCCGCTGGAAGGAGGCGTCCGGCCAGCACATCCTGGACTTGCGCGCCCTGGTGCTCTCGGAACGGTGGGACGCGGCCATGAACCTCACGCTTGC
GCCGCAGAGGGCCGAGGTACGGCGCGCAGCATGATCAGTATGGGAGCCACACCC
GACGGAGGTGTGCGCGTGTCGAAGGTGATGCTTGAGGTACCCGAGGAAGTCGCGAAGTTGCTCAAAGTCATGGAGGCGAAGCTGCGGCAGGAGGGCGCGG
CGGGGAAAAGCTTCGGGGAAGTGGACCCGGAAGGCGCGTTGAAGGCCATTGATGAGGCGGCCGCGGCGTTGCAGTGCGATGCGAAGCGGAGGTTGCTTCA
AGGCTACGACGTCGACGCCCCCCGTCTCCAACTCGCAGGCCAGCTCCACTCCCGGGTCGGCCGGTACACGGCGACGTACAAGACGCGGCAAGGGCCTGTC
GAAGTAGAGCGAAGCCTCTATCGACAGGTAGGGGTGAGAAACGGGCCCACGGTGGACACCGTCAGCCTGCGCGCTGGGTGCGTGGCCGATGGGTGGATGC
CCGAGGCGGCAGTGCCCATGGCGTACCTGCTGGCCCGGGGGACCTCGCGAGAGGCGGAAGCGACGGCGCGCCAGATGGGCGTGCTGCCCTACTGCCGAGC
CTCGTTCGAGCGGGTGGGGCATGAGGTGGGAGCGCTGTACGGCGGCCAGCGGTCTCGGGTGGAGGTGGTGCTGGCCCAGGAGATGCAAGTGCCCCGAGGC
ACCCGCGGCGTGAGCGTCAGCATGGACAGGGTGGCCGTGCCGATGGAGGAGCCGAAGAAGCGGCCGGTGGGCCGCCCTCGCAAGGGCGCCCCCACGCGCC
CGGTGGACGTCGTCTGGCGCATGGCCTACGCCGCCTGCCTCACCTTCCATGATGCCCACGGCGAAGCCCTGGGCACCATCCGCTACGGACGGATGCCACG
GGGCGAGGCCCGAGAGGTGGCAGAACGCCTGGCCCGCGACGTCCAGGCCCTGGTTTCCAGGCGGCGCGGCCTGTACGTCGCCGTCCTCACCGACGGTGCC
CCTGAGTTGCACGCCTTGCTGGACGAGGCGCTGGCCACCCATGCCCCGGCGGCCAAGAAGCCGGTGCGTCTGGTGGACTTCTGGCACCTGATGGAGAAGC
TCGGGGCTGCGGCTCGCGTGGTGGCTGGAGAAGAGACGGCCTCCGCGCTGCGTGAGAAATGGAAGCTGTCCCTGCTCAACACGCCCGGGGCGGCGTGGGC
CATTGCCATGGCGTTGCACGCCAGCGGCAAGCGGCATGTCGTCCTCGGTGACGGCAAACCGGTGCACGAGGCCCTCACCTACCTGGAGAACCACGGCGAA
CGAATGCACTATGCCGAGGCGCGCGCACGGGGACTTCCCATTGGCAGCGGCAACGTGGAGGCTACCTGCAAGTCTCTCGTCTCCCTGCGCATGAAGCGCC
CTGGCGCCCGCTGGAAGGAGGCGTCCGGCCAGCACATCCTGGACTTGCGCGCCCTGGTGCTCTCGGAACGGTGGGACGCGGCCATGAACCTCACGCTTGC
GCCGCAGAGGGCCGAGGTACGGCGCGCAGCATGATCAGTATGGGAGCCACACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1419 bp | 472 aa | 116 | 1534 | + | No |
Chemistry : DDE
ORF sequence :
MSKVMLEVPEEVAKLLKVMEAKLRQEGAAGKSFGEVDPEGALKAIDEAAAALQCDAKRRLLQGYDVDAPRLQLAGQLHSRVGRYTATYKTRQGPVEVERS
LYRQVGVRNGPTVDTVSLRAGCVADGWMPEAAVPMAYLLARGTSREAEATARQMGVLPYCRASFERVGHEVGALYGGQRSRVEVVLAQEMQVPRGTRGVS
VSMDRVAVPMEEPKKRPVGRPRKGAPTRPVDVVWRMAYAACLTFHDAHGEALGTIRYGRMPRGEAREVAERLARDVQALVSRRRGLYVAVLTDGAPELHA
LLDEALATHAPAAKKPVRLVDFWHLMEKLGAAARVVAGEETASALREKWKLSLLNTPGAAWAIAMALHASGKRHVVLGDGKPVHEALTYLENHGERMHYA
EARARGLPIGSGNVEATCKSLVSLRMKRPGARWKEASGQHILDLRALVLSERWDAAMNLTLAPQRAEVRRAA
LYRQVGVRNGPTVDTVSLRAGCVADGWMPEAAVPMAYLLARGTSREAEATARQMGVLPYCRASFERVGHEVGALYGGQRSRVEVVLAQEMQVPRGTRGVS
VSMDRVAVPMEEPKKRPVGRPRKGAPTRPVDVVWRMAYAACLTFHDAHGEALGTIRYGRMPRGEAREVAERLARDVQALVSRRRGLYVAVLTDGAPELHA
LLDEALATHAPAAKKPVRLVDFWHLMEKLGAAARVVAGEETASALREKWKLSLLNTPGAAWAIAMALHASGKRHVVLGDGKPVHEALTYLENHGERMHYA
EARARGLPIGSGNVEATCKSLVSLRMKRPGARWKEASGQHILDLRALVLSERWDAAMNLTLAPQRAEVRRAA
Blast result :
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References