ISSusp4

  • Family ISKra4
  • Group ISAzba1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AALZ01000015 ND Sulfitobacter sp.
Sulfitobacter sp. NAS-14.1
DNA section
IS Length : 1443 bp

Ends


IR Length : 23

IRL : GGGAGTGGGCAAAACTTGGGGGTGTCTGTGTATGCTAGTGGTTCATTGAG
IRR : GGGAGTGGGCAAAACTTGGGGGTTATGCGGCTGCTCTTTGGTAGGCGCCG

Insertion site


Left flankDirect repeatRight flankDR Length
CGCGTTCGGGTGCTGCGGCA0

DNA sequence

GGGAGTGGGCAAAACTTGGGGGTGTCTGTGTATGCTAGTGGTTCATTGAGAGGGGAACTACCATGGACGTGCGAATTATTGTCGAGACGACTTTCGAGAA
CGGAACCACAAAGAGGCATCGTCTCGGCCGCCTATCCCGCCCGTTTCGGCGCACGCAACCTGAGGGTTTCGGGTTGTTGCTCGAAGATGCGAAGACGATC
CTGGGGCAATTGCAGAATGCGATCCTGCGCGACCAGATCGAGGAAATTTCCGAAGCCAGCAGGATCTGTCCGGACTGCGACGGGGTCCGGGCTATACATG
ATTATCGGTCGCGGGTGCCCGACACGCTTTTCGGCAGGTTCGAGGTCAAAGCGCCGCGCATTCGCCGGTGCGCCTGCAATGCAAAATCCGATGTTGTCTT
GGGCGGACCGCTTTCGCCTCTCGCTGACTATTTTCCGGATCGATCGACCCCGGAACTGCGACGCCTTCAGGCCGAACTTGGGGCGCGTCATTCCTTCCGG
GAAGCGGCGCGTATCCTGGAAACCTTTCTACCTTGCGCGAAGCAGGTGAATACATCGGTGCGCAATCGACTGGGCAAAGTTGCCAGGGAAATCTGCGACA
GCGAGCAGACTGAGCCGTTGGTTCCTTCAGCCGCCAAAGAGGCGCCTGCGTTGACGGTTTTCCTAGACGGTGCGCATATCCGATGCAGGCCGGAATACCA
GAAGCGACACCTCGATGTTGTGGTTGGCAAGATCGAAAGACACGATAGGTGCCGTCGCTTCGGCTTGGTGCAACAAGCGGTCCTGTCGCCTGCCAGTCAG
CTTCGCCGGGACTTGATGTCTCTCGGTTGGGATCGCGAACAAACCGTCACGGTAATTTCGGACGGGGAACCAGCCCTGCCAAACCTCGTCCGCAATGCCG
TCGGTGGAAAGGTACGCCACATCCTCGACTGGTGGCATATCTCGATGCGTATTCAGCACGTCGAGAACGCCGTAAAAGGCCTGCTGCAGAGCAGGGGTTT
CTCCGGCATTCCAGTGCTGTTCAAACGTCCGGCCGAAACGCTGCGATGGTACCTTTGGCATGGAAAAGTTCTTACGGCCACGACCAGTCTGCAATGGTTG
ATCGTCGATTGCGCCCGGCTGGTTACAGATGACCGCGTGGCAACTGAAGCCACTCGGCGAGTGCAAGCTCGCTGCCGAGACCTCTATTCATACCTTGCGA
ACAACATGGACAACCTGACGAACTACGGCAAGCGACATCGAAGAGGCCTTCCGGTCTTTTCTTCCCGAGCAGAGGGCTGCGTGGACGACATCGGGAACAC
CCGCATGGGCAAGCGCCGCCGCATGAGATGGTCGCCCAAAGGAGCCCACCGCGTGGCGGTTGTCCGCGCCGCCGTTCTCGACGGTCGGCTAACCGGCGCC
TACCAAAGAGCAGCCGCATAACCCCCAAGTTTTGCCCACTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1359 bp452 aa631421+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDVRIIVETTFENGTTKRHRLGRLSRPFRRTQPEGFGLLLEDAKTILGQLQNAILRDQIEEISEASRICPDCDGVRAIHDYRSRVPDTLFGRFEVKAPRI
RRCACNAKSDVVLGGPLSPLADYFPDRSTPELRRLQAELGARHSFREAARILETFLPCAKQVNTSVRNRLGKVAREICDSEQTEPLVPSAAKEAPALTVF
LDGAHIRCRPEYQKRHLDVVVGKIERHDRCRRFGLVQQAVLSPASQLRRDLMSLGWDREQTVTVISDGEPALPNLVRNAVGGKVRHILDWWHISMRIQHV
ENAVKGLLQSRGFSGIPVLFKRPAETLRWYLWHGKVLTATTSLQWLIVDCARLVTDDRVATEATRRVQARCRDLYSYLANNMDNLTNYGKRHRRGLPVFS
SRAEGCVDDIGNTRMGKRRRMRWSPKGAHRVAVVRAAVLDGRLTGAYQRAAA

 

Blast result :
Comments
References
1] Moran,M.A., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2005) Direct submission GenBank.

2] ISfinder annotation (2008).