ISSusp4
- Family ISKra4
- Group ISAzba1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AALZ01000015 | ND | Sulfitobacter sp. | Sulfitobacter sp. NAS-14.1 |
DNA section
IS Length : 1443 bp
Ends
IR Length : 23
IRL : GGGAGTGGGCAAAACTTGGGGGTGTCTGTGTATGCTAGTGGTTCATTGAG
IRR : GGGAGTGGGCAAAACTTGGGGGTTATGCGGCTGCTCTTTGGTAGGCGCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCGTTCGGG | TGCTGCGGCA | 0 |
DNA sequence
GGGAGTGGGCAAAACTTGGGGGTGTCTGTGTATGCTAGTGGTTCATTGAGAGGGGAACTACCATGGACGTGCGAATTATTGTCGAGACGACTTTCGAGAA
CGGAACCACAAAGAGGCATCGTCTCGGCCGCCTATCCCGCCCGTTTCGGCGCACGCAACCTGAGGGTTTCGGGTTGTTGCTCGAAGATGCGAAGACGATC
CTGGGGCAATTGCAGAATGCGATCCTGCGCGACCAGATCGAGGAAATTTCCGAAGCCAGCAGGATCTGTCCGGACTGCGACGGGGTCCGGGCTATACATG
ATTATCGGTCGCGGGTGCCCGACACGCTTTTCGGCAGGTTCGAGGTCAAAGCGCCGCGCATTCGCCGGTGCGCCTGCAATGCAAAATCCGATGTTGTCTT
GGGCGGACCGCTTTCGCCTCTCGCTGACTATTTTCCGGATCGATCGACCCCGGAACTGCGACGCCTTCAGGCCGAACTTGGGGCGCGTCATTCCTTCCGG
GAAGCGGCGCGTATCCTGGAAACCTTTCTACCTTGCGCGAAGCAGGTGAATACATCGGTGCGCAATCGACTGGGCAAAGTTGCCAGGGAAATCTGCGACA
GCGAGCAGACTGAGCCGTTGGTTCCTTCAGCCGCCAAAGAGGCGCCTGCGTTGACGGTTTTCCTAGACGGTGCGCATATCCGATGCAGGCCGGAATACCA
GAAGCGACACCTCGATGTTGTGGTTGGCAAGATCGAAAGACACGATAGGTGCCGTCGCTTCGGCTTGGTGCAACAAGCGGTCCTGTCGCCTGCCAGTCAG
CTTCGCCGGGACTTGATGTCTCTCGGTTGGGATCGCGAACAAACCGTCACGGTAATTTCGGACGGGGAACCAGCCCTGCCAAACCTCGTCCGCAATGCCG
TCGGTGGAAAGGTACGCCACATCCTCGACTGGTGGCATATCTCGATGCGTATTCAGCACGTCGAGAACGCCGTAAAAGGCCTGCTGCAGAGCAGGGGTTT
CTCCGGCATTCCAGTGCTGTTCAAACGTCCGGCCGAAACGCTGCGATGGTACCTTTGGCATGGAAAAGTTCTTACGGCCACGACCAGTCTGCAATGGTTG
ATCGTCGATTGCGCCCGGCTGGTTACAGATGACCGCGTGGCAACTGAAGCCACTCGGCGAGTGCAAGCTCGCTGCCGAGACCTCTATTCATACCTTGCGA
ACAACATGGACAACCTGACGAACTACGGCAAGCGACATCGAAGAGGCCTTCCGGTCTTTTCTTCCCGAGCAGAGGGCTGCGTGGACGACATCGGGAACAC
CCGCATGGGCAAGCGCCGCCGCATGAGATGGTCGCCCAAAGGAGCCCACCGCGTGGCGGTTGTCCGCGCCGCCGTTCTCGACGGTCGGCTAACCGGCGCC
TACCAAAGAGCAGCCGCATAACCCCCAAGTTTTGCCCACTCCC
CGGAACCACAAAGAGGCATCGTCTCGGCCGCCTATCCCGCCCGTTTCGGCGCACGCAACCTGAGGGTTTCGGGTTGTTGCTCGAAGATGCGAAGACGATC
CTGGGGCAATTGCAGAATGCGATCCTGCGCGACCAGATCGAGGAAATTTCCGAAGCCAGCAGGATCTGTCCGGACTGCGACGGGGTCCGGGCTATACATG
ATTATCGGTCGCGGGTGCCCGACACGCTTTTCGGCAGGTTCGAGGTCAAAGCGCCGCGCATTCGCCGGTGCGCCTGCAATGCAAAATCCGATGTTGTCTT
GGGCGGACCGCTTTCGCCTCTCGCTGACTATTTTCCGGATCGATCGACCCCGGAACTGCGACGCCTTCAGGCCGAACTTGGGGCGCGTCATTCCTTCCGG
GAAGCGGCGCGTATCCTGGAAACCTTTCTACCTTGCGCGAAGCAGGTGAATACATCGGTGCGCAATCGACTGGGCAAAGTTGCCAGGGAAATCTGCGACA
GCGAGCAGACTGAGCCGTTGGTTCCTTCAGCCGCCAAAGAGGCGCCTGCGTTGACGGTTTTCCTAGACGGTGCGCATATCCGATGCAGGCCGGAATACCA
GAAGCGACACCTCGATGTTGTGGTTGGCAAGATCGAAAGACACGATAGGTGCCGTCGCTTCGGCTTGGTGCAACAAGCGGTCCTGTCGCCTGCCAGTCAG
CTTCGCCGGGACTTGATGTCTCTCGGTTGGGATCGCGAACAAACCGTCACGGTAATTTCGGACGGGGAACCAGCCCTGCCAAACCTCGTCCGCAATGCCG
TCGGTGGAAAGGTACGCCACATCCTCGACTGGTGGCATATCTCGATGCGTATTCAGCACGTCGAGAACGCCGTAAAAGGCCTGCTGCAGAGCAGGGGTTT
CTCCGGCATTCCAGTGCTGTTCAAACGTCCGGCCGAAACGCTGCGATGGTACCTTTGGCATGGAAAAGTTCTTACGGCCACGACCAGTCTGCAATGGTTG
ATCGTCGATTGCGCCCGGCTGGTTACAGATGACCGCGTGGCAACTGAAGCCACTCGGCGAGTGCAAGCTCGCTGCCGAGACCTCTATTCATACCTTGCGA
ACAACATGGACAACCTGACGAACTACGGCAAGCGACATCGAAGAGGCCTTCCGGTCTTTTCTTCCCGAGCAGAGGGCTGCGTGGACGACATCGGGAACAC
CCGCATGGGCAAGCGCCGCCGCATGAGATGGTCGCCCAAAGGAGCCCACCGCGTGGCGGTTGTCCGCGCCGCCGTTCTCGACGGTCGGCTAACCGGCGCC
TACCAAAGAGCAGCCGCATAACCCCCAAGTTTTGCCCACTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1359 bp | 452 aa | 63 | 1421 | + | No |
Chemistry : DDE
ORF sequence :
MDVRIIVETTFENGTTKRHRLGRLSRPFRRTQPEGFGLLLEDAKTILGQLQNAILRDQIEEISEASRICPDCDGVRAIHDYRSRVPDTLFGRFEVKAPRI
RRCACNAKSDVVLGGPLSPLADYFPDRSTPELRRLQAELGARHSFREAARILETFLPCAKQVNTSVRNRLGKVAREICDSEQTEPLVPSAAKEAPALTVF
LDGAHIRCRPEYQKRHLDVVVGKIERHDRCRRFGLVQQAVLSPASQLRRDLMSLGWDREQTVTVISDGEPALPNLVRNAVGGKVRHILDWWHISMRIQHV
ENAVKGLLQSRGFSGIPVLFKRPAETLRWYLWHGKVLTATTSLQWLIVDCARLVTDDRVATEATRRVQARCRDLYSYLANNMDNLTNYGKRHRRGLPVFS
SRAEGCVDDIGNTRMGKRRRMRWSPKGAHRVAVVRAAVLDGRLTGAYQRAAA
RRCACNAKSDVVLGGPLSPLADYFPDRSTPELRRLQAELGARHSFREAARILETFLPCAKQVNTSVRNRLGKVAREICDSEQTEPLVPSAAKEAPALTVF
LDGAHIRCRPEYQKRHLDVVVGKIERHDRCRRFGLVQQAVLSPASQLRRDLMSLGWDREQTVTVISDGEPALPNLVRNAVGGKVRHILDWWHISMRIQHV
ENAVKGLLQSRGFSGIPVLFKRPAETLRWYLWHGKVLTATTSLQWLIVDCARLVTDDRVATEATRRVQARCRDLYSYLANNMDNLTNYGKRHRRGLPVFS
SRAEGCVDDIGNTRMGKRRRMRWSPKGAHRVAVVRAAVLDGRLTGAYQRAAA
Blast result :
Comments
References
1] Moran,M.A., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2005) Direct submission GenBank.
2] ISfinder annotation (2008).
2] ISfinder annotation (2008).