ISRssp7
- Family ISKra4
- Group ISAzba1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAMV01000007 | ND | Roseovarius sp. | Roseovarius sp. 217 |
DNA section
IS Length : 1434 bp
Ends
IR Length : 23/24
IRL : GGGAGTGGGCAAAACTTGGTGGTCGACGTGGTAGGTTAAGGTTTCGGAAC
IRR : GGGAGTGGGCAAAACCTGGTGGTCAAGCGGCCCGCTTTGAGACGCCTAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACAGTGGTCCGTCC | GGCGTAGAGCCAGAC | 0 |
DNA sequence
GGGAGTGGGCAAAACTTGGTGGTCGACGTGGTAGGTTAAGGTTTCGGAACAAGGCGGGACCCACCATGGATGTAAGCATTTTTGTCGAGACGACGTTTGA
CGATGGAGAAACCAAGAGGCGCGATATCGGTCGACTTCGCCGTGCGCCGGACGAGTTCGGTTCCGAGAATTTGGGCCTTCTCCTCGACGACGCAAAGACC
TTGTTGAGGCGCTTGCAGGAAGCGATTGTGCAAGATCAGGTCGGTGAAGCAATAGAGGCTCGCCGGAAATGCGATGGCTGTGGCAAACAACGCGCGATCC
ATGATGATCGAGGCCGTATTCTCGACACTCTTTTCGGGCGAATTCGGGTGAAGTGGCCAAGGCTTCGACGCTGTTTGTGCCAACCGGCCGGGATCGCGAA
ATCTGGGCCGCAATCACCACTTGCCGGGTTGTTCTCTGACCGTGCGACTTCCGAACTTCGGCGCCTGCAGGCTGAATTGGGGGCCAGGCACTCGTTTCGG
GAAGCCGCCACGTTGATCGAAATGTTCCTGCCCTGTTCGGCTCAGTTGAACACGACCGTTCGAAATCGCTTGGGTCGCATCGCCGACGAGCTAGGCCACG
ACGACGCAAGCCAAGGAGACGCGGATACAATCGCGCCGCCCTCCCCACTGACCGTTTTCCTGGATGGTGCGCACATACGATGTCGGTCTGAATACCAGAA
GCGCCACCTGGATGTCGTGGTCGGCAAGGTCGAAAGCCCCAATATGAGCCGGCGGTTTGGCCTCGTGCAGCAAGCCGCCAGTTCTCCCGCAAAGCAGCTC
CGACATCACCTGATCGCGCAGGGCTGGGACGGTCAGAGCAAAGTGACCGTGATTTCGGACGGCGAAGCTGCACTGCCGAATTTGGTGAGGCGTGCCGTTC
GAGGTCCTGTCACCCACATACTGGACTGGTGGCATATCTCGATGCGGGTCAAACACATTGAAAATGCGGTGCTGGGACTTCTGCAATCGAAGGGCTTTTC
AGGGTTGCCGCTCCTCTTCGATCAACCTGCCGATACACTGCGTTGGTACCTTTGGCACGGCAAAGTGATGACCGCCGCGACAATCCTCAACGTTCTTCAG
ATCGATTGCGATCGTCTGCACACCGAAACCCGAGAATTACGAGAAGCGGCCAAGCGCGTCAAAGCCCGGTGCCAGGACCTCTATTCATACCTTGCGAACA
ACTTCGACGCGCTCGTAGACTACGGCCATCGACACCGGAATGGCCTCGCAGTTTCGTCGTCCCGGGCAGAAGGCTGCGTTGATGACATCGGCAACACCCG
CATGGGCAAGCAGCGGCGCATGAGATGGTCACCGCGGGGCGCGCATCGGGTTGCCGTCACTCGGGCCGCTGTCCTTGACGGAAGGCTAGGCGTCTCAAAG
CGGGCCGCTTGACCACCAGGTTTTGCCCACTCCC
CGATGGAGAAACCAAGAGGCGCGATATCGGTCGACTTCGCCGTGCGCCGGACGAGTTCGGTTCCGAGAATTTGGGCCTTCTCCTCGACGACGCAAAGACC
TTGTTGAGGCGCTTGCAGGAAGCGATTGTGCAAGATCAGGTCGGTGAAGCAATAGAGGCTCGCCGGAAATGCGATGGCTGTGGCAAACAACGCGCGATCC
ATGATGATCGAGGCCGTATTCTCGACACTCTTTTCGGGCGAATTCGGGTGAAGTGGCCAAGGCTTCGACGCTGTTTGTGCCAACCGGCCGGGATCGCGAA
ATCTGGGCCGCAATCACCACTTGCCGGGTTGTTCTCTGACCGTGCGACTTCCGAACTTCGGCGCCTGCAGGCTGAATTGGGGGCCAGGCACTCGTTTCGG
GAAGCCGCCACGTTGATCGAAATGTTCCTGCCCTGTTCGGCTCAGTTGAACACGACCGTTCGAAATCGCTTGGGTCGCATCGCCGACGAGCTAGGCCACG
ACGACGCAAGCCAAGGAGACGCGGATACAATCGCGCCGCCCTCCCCACTGACCGTTTTCCTGGATGGTGCGCACATACGATGTCGGTCTGAATACCAGAA
GCGCCACCTGGATGTCGTGGTCGGCAAGGTCGAAAGCCCCAATATGAGCCGGCGGTTTGGCCTCGTGCAGCAAGCCGCCAGTTCTCCCGCAAAGCAGCTC
CGACATCACCTGATCGCGCAGGGCTGGGACGGTCAGAGCAAAGTGACCGTGATTTCGGACGGCGAAGCTGCACTGCCGAATTTGGTGAGGCGTGCCGTTC
GAGGTCCTGTCACCCACATACTGGACTGGTGGCATATCTCGATGCGGGTCAAACACATTGAAAATGCGGTGCTGGGACTTCTGCAATCGAAGGGCTTTTC
AGGGTTGCCGCTCCTCTTCGATCAACCTGCCGATACACTGCGTTGGTACCTTTGGCACGGCAAAGTGATGACCGCCGCGACAATCCTCAACGTTCTTCAG
ATCGATTGCGATCGTCTGCACACCGAAACCCGAGAATTACGAGAAGCGGCCAAGCGCGTCAAAGCCCGGTGCCAGGACCTCTATTCATACCTTGCGAACA
ACTTCGACGCGCTCGTAGACTACGGCCATCGACACCGGAATGGCCTCGCAGTTTCGTCGTCCCGGGCAGAAGGCTGCGTTGATGACATCGGCAACACCCG
CATGGGCAAGCAGCGGCGCATGAGATGGTCACCGCGGGGCGCGCATCGGGTTGCCGTCACTCGGGCCGCTGTCCTTGACGGAAGGCTAGGCGTCTCAAAG
CGGGCCGCTTGACCACCAGGTTTTGCCCACTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1347 bp | 448 aa | 66 | 1412 | + | No |
Chemistry : DDE
ORF sequence :
MDVSIFVETTFDDGETKRRDIGRLRRAPDEFGSENLGLLLDDAKTLLRRLQEAIVQDQVGEAIEARRKCDGCGKQRAIHDDRGRILDTLFGRIRVKWPRL
RRCLCQPAGIAKSGPQSPLAGLFSDRATSELRRLQAELGARHSFREAATLIEMFLPCSAQLNTTVRNRLGRIADELGHDDASQGDADTIAPPSPLTVFLD
GAHIRCRSEYQKRHLDVVVGKVESPNMSRRFGLVQQAASSPAKQLRHHLIAQGWDGQSKVTVISDGEAALPNLVRRAVRGPVTHILDWWHISMRVKHIEN
AVLGLLQSKGFSGLPLLFDQPADTLRWYLWHGKVMTAATILNVLQIDCDRLHTETRELREAAKRVKARCQDLYSYLANNFDALVDYGHRHRNGLAVSSSR
AEGCVDDIGNTRMGKQRRMRWSPRGAHRVAVTRAAVLDGRLGVSKRAA
RRCLCQPAGIAKSGPQSPLAGLFSDRATSELRRLQAELGARHSFREAATLIEMFLPCSAQLNTTVRNRLGRIADELGHDDASQGDADTIAPPSPLTVFLD
GAHIRCRSEYQKRHLDVVVGKVESPNMSRRFGLVQQAASSPAKQLRHHLIAQGWDGQSKVTVISDGEAALPNLVRRAVRGPVTHILDWWHISMRVKHIEN
AVLGLLQSKGFSGLPLLFDQPADTLRWYLWHGKVMTAATILNVLQIDCDRLHTETRELREAAKRVKARCQDLYSYLANNFDALVDYGHRHRNGLAVSSSR
AEGCVDDIGNTRMGKQRRMRWSPRGAHRVAVTRAAVLDGRLGVSKRAA
Blast result :
Comments
References
1] Murrell,J.C., Schafer,H., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct Submission GenBanK.
2] ISfinder annotation.
2] ISfinder annotation.