ISRssp7

  • Family ISKra4
  • Group ISAzba1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAMV01000007 ND Roseovarius sp.
Roseovarius sp. 217
DNA section
IS Length : 1434 bp

Ends


IR Length : 23/24

IRL : GGGAGTGGGCAAAACTTGGTGGTCGACGTGGTAGGTTAAGGTTTCGGAAC
IRR : GGGAGTGGGCAAAACCTGGTGGTCAAGCGGCCCGCTTTGAGACGCCTAGC

Insertion site


Left flankDirect repeatRight flankDR Length
GACAGTGGTCCGTCCGGCGTAGAGCCAGAC0

DNA sequence

GGGAGTGGGCAAAACTTGGTGGTCGACGTGGTAGGTTAAGGTTTCGGAACAAGGCGGGACCCACCATGGATGTAAGCATTTTTGTCGAGACGACGTTTGA
CGATGGAGAAACCAAGAGGCGCGATATCGGTCGACTTCGCCGTGCGCCGGACGAGTTCGGTTCCGAGAATTTGGGCCTTCTCCTCGACGACGCAAAGACC
TTGTTGAGGCGCTTGCAGGAAGCGATTGTGCAAGATCAGGTCGGTGAAGCAATAGAGGCTCGCCGGAAATGCGATGGCTGTGGCAAACAACGCGCGATCC
ATGATGATCGAGGCCGTATTCTCGACACTCTTTTCGGGCGAATTCGGGTGAAGTGGCCAAGGCTTCGACGCTGTTTGTGCCAACCGGCCGGGATCGCGAA
ATCTGGGCCGCAATCACCACTTGCCGGGTTGTTCTCTGACCGTGCGACTTCCGAACTTCGGCGCCTGCAGGCTGAATTGGGGGCCAGGCACTCGTTTCGG
GAAGCCGCCACGTTGATCGAAATGTTCCTGCCCTGTTCGGCTCAGTTGAACACGACCGTTCGAAATCGCTTGGGTCGCATCGCCGACGAGCTAGGCCACG
ACGACGCAAGCCAAGGAGACGCGGATACAATCGCGCCGCCCTCCCCACTGACCGTTTTCCTGGATGGTGCGCACATACGATGTCGGTCTGAATACCAGAA
GCGCCACCTGGATGTCGTGGTCGGCAAGGTCGAAAGCCCCAATATGAGCCGGCGGTTTGGCCTCGTGCAGCAAGCCGCCAGTTCTCCCGCAAAGCAGCTC
CGACATCACCTGATCGCGCAGGGCTGGGACGGTCAGAGCAAAGTGACCGTGATTTCGGACGGCGAAGCTGCACTGCCGAATTTGGTGAGGCGTGCCGTTC
GAGGTCCTGTCACCCACATACTGGACTGGTGGCATATCTCGATGCGGGTCAAACACATTGAAAATGCGGTGCTGGGACTTCTGCAATCGAAGGGCTTTTC
AGGGTTGCCGCTCCTCTTCGATCAACCTGCCGATACACTGCGTTGGTACCTTTGGCACGGCAAAGTGATGACCGCCGCGACAATCCTCAACGTTCTTCAG
ATCGATTGCGATCGTCTGCACACCGAAACCCGAGAATTACGAGAAGCGGCCAAGCGCGTCAAAGCCCGGTGCCAGGACCTCTATTCATACCTTGCGAACA
ACTTCGACGCGCTCGTAGACTACGGCCATCGACACCGGAATGGCCTCGCAGTTTCGTCGTCCCGGGCAGAAGGCTGCGTTGATGACATCGGCAACACCCG
CATGGGCAAGCAGCGGCGCATGAGATGGTCACCGCGGGGCGCGCATCGGGTTGCCGTCACTCGGGCCGCTGTCCTTGACGGAAGGCTAGGCGTCTCAAAG
CGGGCCGCTTGACCACCAGGTTTTGCCCACTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1347 bp448 aa661412+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDVSIFVETTFDDGETKRRDIGRLRRAPDEFGSENLGLLLDDAKTLLRRLQEAIVQDQVGEAIEARRKCDGCGKQRAIHDDRGRILDTLFGRIRVKWPRL
RRCLCQPAGIAKSGPQSPLAGLFSDRATSELRRLQAELGARHSFREAATLIEMFLPCSAQLNTTVRNRLGRIADELGHDDASQGDADTIAPPSPLTVFLD
GAHIRCRSEYQKRHLDVVVGKVESPNMSRRFGLVQQAASSPAKQLRHHLIAQGWDGQSKVTVISDGEAALPNLVRRAVRGPVTHILDWWHISMRVKHIEN
AVLGLLQSKGFSGLPLLFDQPADTLRWYLWHGKVMTAATILNVLQIDCDRLHTETRELREAAKRVKARCQDLYSYLANNFDALVDYGHRHRNGLAVSSSR
AEGCVDDIGNTRMGKQRRMRWSPRGAHRVAVTRAAVLDGRLGVSKRAA

 

Blast result :
Comments
References
1] Murrell,J.C., Schafer,H., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct Submission GenBanK.

2] ISfinder annotation.