ISNpe9

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003372 ND Natrinema pellirubrum
Natrinema pellirubrum DSM 15624
DNA section
IS Length : 742 bp

Ends


IR Length : 12/14

IRL : GGCACCGTCTAGTTAGCGCAGTTTGAGGAACGAGCAGGTCGTAGAGTTAG
IRR : GACACTGTCTAGTTTAGCACCTCCGCTGGCATCTGTCCGTTGAGTGACTG

Insertion site


Left flankDirect repeatRight flankDR Length
TTTGACCTTAGTGTGGACCCAAA3

DNA sequence

GGCACCGTCTAGTTAGCGCAGTTTGAGGAACGAGCAGGTCGTAGAGTTAGTTTGGATCAATGCTCGCAGACCTGCTCAGCGAGAGCTACGCGGCGGAATT
TGATGAATGTTGGGAGCGTGAGCGGACGGCGACGCCCGTCAGGGCGTTCGCCGTCCAGCTCCACGCGACTGGTTGTTCGCTCCGAGAGACACAAGCGATT
CTTCGCTCACTCGGCGTTGAACGCTCTCATCAAGCAATCTGGCACTGGGTGCATCGGCTAGCTGACAGCGTGCCAGACCCGCCGACGGCGAAGCCGTCGC
GGGTCGCGGTAGATGAAACCGCTGTCAGGATTAACGGCGACCGATCTTGGATGTACGCTGCAATAGACCTCGACACGAAACTCATTCTCGATGTCGCGCT
CTTTGGGCGGCGAGGTACCGATCCAGCTGCTGCGTTTCTGCATGGACTCAGCGAGAAACACGATCTCTCCGACGCTGAGTTTCTCGTCGGTGGTGCTGGC
TATCTGACTGCCCTCTCTCGATTGGGATTGAGCGGTCACCTCGACTATGTCGATCGAAACCACATCGAAAAGTGGTTTCACACGCTCAAAATGCGGATCG
ACCGCTTCCATACTTCGTGGGTGGGCAGTCGGGCGACCGTCAGAGAATGGCTTGAACAATTTGTACACTACTACAACACACAGCGACCGCACCAGTCACT
CAACGGACAGATGCCAGCGGAGGTGCTAAACTAGACAGTGTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
675 bp224 aa60734+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLADLLSESYAAEFDECWERERTATPVRAFAVQLHATGCSLRETQAILRSLGVERSHQAIWHWVHRLADSVPDPPTAKPSRVAVDETAVRINGDRSWMYA
AIDLDTKLILDVALFGRRGTDPAAAFLHGLSEKHDLSDAEFLVGGAGYLTALSRLGLSGHLDYVDRNHIEKWFHTLKMRIDRFHTSWVGSRATVREWLEQ
FVHYYNTQRPHQSLNGQMPAEVLN

 

Blast result :
Comments
ISNpe9 is 92% aa similar to ISHtu2.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank