ISNpe9
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003372 | ND | Natrinema pellirubrum | Natrinema pellirubrum DSM 15624 |
DNA section
IS Length : 742 bp
Ends
IR Length : 12/14
IRL : GGCACCGTCTAGTTAGCGCAGTTTGAGGAACGAGCAGGTCGTAGAGTTAG
IRR : GACACTGTCTAGTTTAGCACCTCCGCTGGCATCTGTCCGTTGAGTGACTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTGACCTTA | GTG | TGGACCCAAA | 3 |
DNA sequence
GGCACCGTCTAGTTAGCGCAGTTTGAGGAACGAGCAGGTCGTAGAGTTAGTTTGGATCAATGCTCGCAGACCTGCTCAGCGAGAGCTACGCGGCGGAATT
TGATGAATGTTGGGAGCGTGAGCGGACGGCGACGCCCGTCAGGGCGTTCGCCGTCCAGCTCCACGCGACTGGTTGTTCGCTCCGAGAGACACAAGCGATT
CTTCGCTCACTCGGCGTTGAACGCTCTCATCAAGCAATCTGGCACTGGGTGCATCGGCTAGCTGACAGCGTGCCAGACCCGCCGACGGCGAAGCCGTCGC
GGGTCGCGGTAGATGAAACCGCTGTCAGGATTAACGGCGACCGATCTTGGATGTACGCTGCAATAGACCTCGACACGAAACTCATTCTCGATGTCGCGCT
CTTTGGGCGGCGAGGTACCGATCCAGCTGCTGCGTTTCTGCATGGACTCAGCGAGAAACACGATCTCTCCGACGCTGAGTTTCTCGTCGGTGGTGCTGGC
TATCTGACTGCCCTCTCTCGATTGGGATTGAGCGGTCACCTCGACTATGTCGATCGAAACCACATCGAAAAGTGGTTTCACACGCTCAAAATGCGGATCG
ACCGCTTCCATACTTCGTGGGTGGGCAGTCGGGCGACCGTCAGAGAATGGCTTGAACAATTTGTACACTACTACAACACACAGCGACCGCACCAGTCACT
CAACGGACAGATGCCAGCGGAGGTGCTAAACTAGACAGTGTC
TGATGAATGTTGGGAGCGTGAGCGGACGGCGACGCCCGTCAGGGCGTTCGCCGTCCAGCTCCACGCGACTGGTTGTTCGCTCCGAGAGACACAAGCGATT
CTTCGCTCACTCGGCGTTGAACGCTCTCATCAAGCAATCTGGCACTGGGTGCATCGGCTAGCTGACAGCGTGCCAGACCCGCCGACGGCGAAGCCGTCGC
GGGTCGCGGTAGATGAAACCGCTGTCAGGATTAACGGCGACCGATCTTGGATGTACGCTGCAATAGACCTCGACACGAAACTCATTCTCGATGTCGCGCT
CTTTGGGCGGCGAGGTACCGATCCAGCTGCTGCGTTTCTGCATGGACTCAGCGAGAAACACGATCTCTCCGACGCTGAGTTTCTCGTCGGTGGTGCTGGC
TATCTGACTGCCCTCTCTCGATTGGGATTGAGCGGTCACCTCGACTATGTCGATCGAAACCACATCGAAAAGTGGTTTCACACGCTCAAAATGCGGATCG
ACCGCTTCCATACTTCGTGGGTGGGCAGTCGGGCGACCGTCAGAGAATGGCTTGAACAATTTGTACACTACTACAACACACAGCGACCGCACCAGTCACT
CAACGGACAGATGCCAGCGGAGGTGCTAAACTAGACAGTGTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
675 bp | 224 aa | 60 | 734 | + | No |
Chemistry : DDE
ORF sequence :
MLADLLSESYAAEFDECWERERTATPVRAFAVQLHATGCSLRETQAILRSLGVERSHQAIWHWVHRLADSVPDPPTAKPSRVAVDETAVRINGDRSWMYA
AIDLDTKLILDVALFGRRGTDPAAAFLHGLSEKHDLSDAEFLVGGAGYLTALSRLGLSGHLDYVDRNHIEKWFHTLKMRIDRFHTSWVGSRATVREWLEQ
FVHYYNTQRPHQSLNGQMPAEVLN
AIDLDTKLILDVALFGRRGTDPAAAFLHGLSEKHDLSDAEFLVGGAGYLTALSRLGLSGHLDYVDRNHIEKWFHTLKMRIDRFHTSWVGSRATVREWLEQ
FVHYYNTQRPHQSLNGQMPAEVLN
Blast result :
Comments
ISNpe9 is 92% aa similar to ISHtu2.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank