ISTet1
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AEYS01000004.1 | ND | Thermoanaerobacter ethanolicus | Thermoanaerobacter ethanolicus JW 200 |
DNA section
IS Length : 1596 bp
Ends
IR Length : 21/28
IRL : CATAGTGTAAAATTATCGTAGGATTTTTAGATGATAAAAAAACAAGAGAC
IRR : GATAGTGTCAAGATACTGTAGGATATTTTTTTAAAGACAACCCCTGAAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAGATATTT | TTATAAAGG | TAATGAATAA | 9 |
DNA sequence
CATAGTGTAAAATTATCGTAGGATTTTTAGATGATAAAAAAACAAGAGACAACCCCTGTGATAAAATAGATTGTGGAAAACCAAAAAAACATGAAAGGGG
TGTCTCTTGTGAAAAAAATTAAGTTTGAAGATATTATACTACAAAATGCATGTAATTACATCAATAATGTGATAGAAATTTTTAAAAAGTTATTAGAAGA
AGGGATGGATATAACAGAACTTTCATTAAAAGTTAGAGAAATGGTAGACAAATTAGGTATAGAAACAATGGTAGCAATTATAGAAGAATTAGATAAGATA
ATAAAAGAAGACAAGAGAAGGAAAGAGAAATGGGTAGTAGAAAGGGAAGATGAAAAGACTTTAATAACGACAGTAGGAGAAATAAAATATAAAAGGACAT
ATTACAAATCAAAAGAAGATGGGAGATACACCTACTTAACAGATGACGCATTAGGGATAGGTAGGCATGAGAGGATAGAAGAAGGAGTAAAAGTAAAGAT
AGTAGAAAAAGCGACAGAAGAATCCTATGAAAAAAGCAGTAAAGAAGCAAGCCCAGTAGAATTAAGTAGACAGACAGTATTAAATGCAATAAGAGAGATA
GGAGAAGTAGAAATAAAAAAAGAAGTAGAAGAAAAGAAAGAAATAAAAGTATTATACATAGAAGCAGATGAAGACCACGTATCCTTACAAGACGGGGGAA
AAGAAATGCCACGACTTGTATACATACATGAAGGCAAAGAGACAAAGAACGGTAGGTCTGAGCTAAAGAATGTCCATTACAAAGCATATGTAGGACAAAA
GCCAGAAGACATATGGATAGACGTAGCAAATTACATAAATGACAATTACAAAGAAGAAAAAATAGAGAAGATATACATAGCAGGTGATGGAGCAAGATGG
ATAAAAGAAGGGATAGAGTGGATACCAAAATCAAGATTTGTATTAGACAGGTATCATTTAAACAAATACATACTCATGGCAACATCGAAAGAGCCAAGAT
ATAGAGATAGGATATGGAGAGCAATAAATGAAGGGAATGAAAAAGAATTAAAAGAAGCATTTAATGAACTATCAAAAATAGCACAAACAGAGCAAGAGAA
GAAGAAAATAAGGGAAGTAAAGAAATACATATTAAACAACTGGGAAGGGATAAAAATATACAAAGAAGATGAGGATGCAATAGGGTGCAGTGCAGAAGGG
CATATAAGCCATGTATTTTCAGACAGGTTAAGCAGGAACCCATTAGGATGGAGTAGAGAAGGATTAAAGCTAATGGCGAAATTAAGAGTATTTAAGAAAA
ATGGAGGCAATTTAAGAGAAGTAGAATGGCGTAAAAAGCGCAAAAACAACAATGAAGGTTATAAATTAACAAAGAAGCAAATAAAAGAGGCAGTAAAGAG
AGCTAAAACGTATACAAAAGAACAAATAAACAATATTACAGTATTAAACATGGGCAAAGTAACACCAATATATAGAATTTTAAAAGCAATAAAATATGAA
AGAGTGATATAAAAAACACATAATAATGGAAACCTTGATTTAAGCAATTTCAGGGGTTGTCTTTAAAAAAATATCCTACAGTATCTTGACACTATC
TGTCTCTTGTGAAAAAAATTAAGTTTGAAGATATTATACTACAAAATGCATGTAATTACATCAATAATGTGATAGAAATTTTTAAAAAGTTATTAGAAGA
AGGGATGGATATAACAGAACTTTCATTAAAAGTTAGAGAAATGGTAGACAAATTAGGTATAGAAACAATGGTAGCAATTATAGAAGAATTAGATAAGATA
ATAAAAGAAGACAAGAGAAGGAAAGAGAAATGGGTAGTAGAAAGGGAAGATGAAAAGACTTTAATAACGACAGTAGGAGAAATAAAATATAAAAGGACAT
ATTACAAATCAAAAGAAGATGGGAGATACACCTACTTAACAGATGACGCATTAGGGATAGGTAGGCATGAGAGGATAGAAGAAGGAGTAAAAGTAAAGAT
AGTAGAAAAAGCGACAGAAGAATCCTATGAAAAAAGCAGTAAAGAAGCAAGCCCAGTAGAATTAAGTAGACAGACAGTATTAAATGCAATAAGAGAGATA
GGAGAAGTAGAAATAAAAAAAGAAGTAGAAGAAAAGAAAGAAATAAAAGTATTATACATAGAAGCAGATGAAGACCACGTATCCTTACAAGACGGGGGAA
AAGAAATGCCACGACTTGTATACATACATGAAGGCAAAGAGACAAAGAACGGTAGGTCTGAGCTAAAGAATGTCCATTACAAAGCATATGTAGGACAAAA
GCCAGAAGACATATGGATAGACGTAGCAAATTACATAAATGACAATTACAAAGAAGAAAAAATAGAGAAGATATACATAGCAGGTGATGGAGCAAGATGG
ATAAAAGAAGGGATAGAGTGGATACCAAAATCAAGATTTGTATTAGACAGGTATCATTTAAACAAATACATACTCATGGCAACATCGAAAGAGCCAAGAT
ATAGAGATAGGATATGGAGAGCAATAAATGAAGGGAATGAAAAAGAATTAAAAGAAGCATTTAATGAACTATCAAAAATAGCACAAACAGAGCAAGAGAA
GAAGAAAATAAGGGAAGTAAAGAAATACATATTAAACAACTGGGAAGGGATAAAAATATACAAAGAAGATGAGGATGCAATAGGGTGCAGTGCAGAAGGG
CATATAAGCCATGTATTTTCAGACAGGTTAAGCAGGAACCCATTAGGATGGAGTAGAGAAGGATTAAAGCTAATGGCGAAATTAAGAGTATTTAAGAAAA
ATGGAGGCAATTTAAGAGAAGTAGAATGGCGTAAAAAGCGCAAAAACAACAATGAAGGTTATAAATTAACAAAGAAGCAAATAAAAGAGGCAGTAAAGAG
AGCTAAAACGTATACAAAAGAACAAATAAACAATATTACAGTATTAAACATGGGCAAAGTAACACCAATATATAGAATTTTAAAAGCAATAAAATATGAA
AGAGTGATATAAAAAACACATAATAATGGAAACCTTGATTTAAGCAATTTCAGGGGTTGTCTTTAAAAAAATATCCTACAGTATCTTGACACTATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1419 bp | 473 aa | 91 | 1509 | + | No |
Chemistry : DDE
ORF sequence :
MKGVSLVKKIKFEDIILQNACNYINNVIEIFKKLLEEGMDITELSLKVREMVDKLGIETMVAIIEELDKIIKEDKRRKEKWVVEREDEKTLITTVGEIKY
KRTYYKSKEDGRYTYLTDDALGIGRHERIEEGVKVKIVEKATEESYEKSSKEASPVELSRQTVLNAIREIGEVEIKKEVEEKKEIKVLYIEADEDHVSLQ
DGGKEMPRLVYIHEGKETKNGRSELKNVHYKAYVGQKPEDIWIDVANYINDNYKEEKIEKIYIAGDGARWIKEGIEWIPKSRFVLDRYHLNKYILMATSK
EPRYRDRIWRAINEGNEKELKEAFNELSKIAQTEQEKKKIREVKKYILNNWEGIKIYKEDEDAIGCSAEGHISHVFSDRLSRNPLGWSREGLKLMAKLRV
FKKNGGNLREVEWRKKRKNNNEGYKLTKKQIKEAVKRAKTYTKEQINNITVLNMGKVTPIYRILKAIKYERVI
KRTYYKSKEDGRYTYLTDDALGIGRHERIEEGVKVKIVEKATEESYEKSSKEASPVELSRQTVLNAIREIGEVEIKKEVEEKKEIKVLYIEADEDHVSLQ
DGGKEMPRLVYIHEGKETKNGRSELKNVHYKAYVGQKPEDIWIDVANYINDNYKEEKIEKIYIAGDGARWIKEGIEWIPKSRFVLDRYHLNKYILMATSK
EPRYRDRIWRAINEGNEKELKEAFNELSKIAQTEQEKKKIREVKKYILNNWEGIKIYKEDEDAIGCSAEGHISHVFSDRLSRNPLGWSREGLKLMAKLRV
FKKNGGNLREVEWRKKRKNNNEGYKLTKKQIKEAVKRAKTYTKEQINNITVLNMGKVTPIYRILKAIKYERVI
Blast result :
Comments
ISTet1 is 88% aa similar to ISTte3.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References