ISTeha1

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_016052 ND Tetragenococcus halophilus
Tetragenococcus halophilus NBRC 12172
DNA section
IS Length : 1641 bp

Ends


IR Length : 19/23

IRL : CTAAGTGTAAAATTTATTGAGGTATCCTCTAGACGAATAAAAAAGAAACC
IRR : GTATGTGTCAAGTTTATTGAGGTTGAATAAAAAAACCGTCTTTGGGGCAG

Insertion site


Left flankDirect repeatRight flankDR Length
AAGTTTTTTAAGAGAGAAGATGTTTTTTC9
TTTTTATAGCGGCCTGGGACTTTGTCTTG9
TTAGTTGGTAATAATCAATCTTCTAGTTG9

DNA sequence

CTAAGTGTAAAATTTATTGAGGTATCCTCTAGACGAATAAAAAAGAAACCGTTACTCTATTCATTGGGCTAACAGGCACTAATGAACAAAGGCGGTTTCT
TATGGATTCTATTGTAACAGATTTAGTGGAAGTAATGAAGAAGGAAACGAATTTTTTAGCAAGAGAAAGAGCCATGATGATCTTTTTTACAAAACTTATA
GCCACGATCACACAATTGGCTTTTCAAACGCTCGATAAAGAAATTTGTGCGCAATGTAAAAAAGAAGGTTTTCGCGTCGATCGCAAGAGCGAGAGAACCA
TCACTTTTTTGTTTGGTCCCGTGACCTATGTTCGTCGACGAATGAAAAATCAAGCCAATGACATTCGTTACCCCTTAGATGAATTTCTAGGGATTCGAAA
AGGTCTTCGTTATAGTTCGCTCGTCCTGCGAAATGTGGCTCAATTAGGCAGTAACATGGTCTATCGTCATGTTTCTCAAGCGATCGACTGTTTAACTTCT
TGGCAGATGAGTCATCAAAATGTGCAACAATTGGTGGTTAAAACGGGCGAATTCATCCAAGACAGGAGCACGCATGAAAGTCGTTACGACGGCGTGATCA
CCAAGAAAAAAGTGCCTTATTTATATCTGGAAGGAGACGGCGTAAAGATCAACGGGCAGAAGAAACAATCCCTTGAAGTTCACCGTTTTCAAGTGTGTGA
AGGCAGCCAGAAAGTCGGCAATCGCTCGGAAATGATCGCCCCGCACTTTGTGAGTCATCTGAATCGGCAAAAAGCATACAAAGAAATGATGGCCTATCTT
CAAGCCTATTATGATTTAAGTCATACCGTGGTCATTTCCAATAGTGACGGCGGTTCGGGTTATGAAAAAGCGGTGTTTGATGAACTGGCTTTAGGTTGTT
TGCGTCATGAACACTTCCGTGATCGATACCATGTCCATCGGAAAATCAAGGAACGAATGGCTTTTGTTCCCCAGCTCCAACATCGAATGATACGAGCGAT
TGAACATTATAATTGGCAAGCAGTCCAGCTGGTTTTAGATACTTCGGAAAGCTTGATTGAAGAAAAGGAAGCCGAGGCTTTAGAACATTTACGTTTACTG
CATCACTATCTTCAAAGAAGTTGGCCTTATTTAAAATCATTGAAAGCACGAGGAATCAGGGATTCCAAAGCTTGTATTGGCACGATCGAAAGTACCCATC
GAAAAATCACCTATCGCATGAAGCGCCAAGGTCGTTTGTGGACAACAACTGGGGCCCAAGCCATGATTCGTGTCATTGATAGTTTAAGAAACCAAGAATT
GGAAGGTTGGTTGAACCAATACGAAGCCCTTCCGAATGATGTGGTTGCCCAGGAAAAACGTTGGCACGCTATGAAACGTTGGGTACAGAAAAAGCCTCGT
TTCCAAGCCCATGAAGGTGCATTTAAAGGACAGATTGGCGAAGGAAAAGCGAAAAGTGCGCCTTTAGGCCAATTCGCCAAAGGATTAAATCAATTACTAA
TGACCCCGAGTTATCTCTAATAAAAACTTGTTTTTGTTAGAGATGATGAGGACAAACCGAACGAAAGTGAGGTTGAAAGATAACTTTGTGTCTGCCCCAA
AGACGGTTTTTTTATTCAACCTCAATAAACTTGACACATAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1419 bp472 aa1021520+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDSIVTDLVEVMKKETNFLARERAMMIFFTKLIATITQLAFQTLDKEICAQCKKEGFRVDRKSERTITFLFGPVTYVRRRMKNQANDIRYPLDEFLGIRK
GLRYSSLVLRNVAQLGSNMVYRHVSQAIDCLTSWQMSHQNVQQLVVKTGEFIQDRSTHESRYDGVITKKKVPYLYLEGDGVKINGQKKQSLEVHRFQVCE
GSQKVGNRSEMIAPHFVSHLNRQKAYKEMMAYLQAYYDLSHTVVISNSDGGSGYEKAVFDELALGCLRHEHFRDRYHVHRKIKERMAFVPQLQHRMIRAI
EHYNWQAVQLVLDTSESLIEEKEAEALEHLRLLHHYLQRSWPYLKSLKARGIRDSKACIGTIESTHRKITYRMKRQGRLWTTTGAQAMIRVIDSLRNQEL
EGWLNQYEALPNDVVAQEKRWHAMKRWVQKKPRFQAHEGAFKGQIGEGKAKSAPLGQFAKGLNQLLMTPSYL

 

Blast result :
Comments
ISTeha1 is 60% aa similar to ISLcr2.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References