ISTeha1
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_016052 | ND | Tetragenococcus halophilus | Tetragenococcus halophilus NBRC 12172 |
DNA section
IS Length : 1641 bp
Ends
IR Length : 19/23
IRL : CTAAGTGTAAAATTTATTGAGGTATCCTCTAGACGAATAAAAAAGAAACC
IRR : GTATGTGTCAAGTTTATTGAGGTTGAATAAAAAAACCGTCTTTGGGGCAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAGTTTTTTA | AGAGAGAAG | ATGTTTTTTC | 9 |
TTTTTATAGC | GGCCTGGGA | CTTTGTCTTG | 9 |
TTAGTTGGTA | ATAATCAAT | CTTCTAGTTG | 9 |
DNA sequence
CTAAGTGTAAAATTTATTGAGGTATCCTCTAGACGAATAAAAAAGAAACCGTTACTCTATTCATTGGGCTAACAGGCACTAATGAACAAAGGCGGTTTCT
TATGGATTCTATTGTAACAGATTTAGTGGAAGTAATGAAGAAGGAAACGAATTTTTTAGCAAGAGAAAGAGCCATGATGATCTTTTTTACAAAACTTATA
GCCACGATCACACAATTGGCTTTTCAAACGCTCGATAAAGAAATTTGTGCGCAATGTAAAAAAGAAGGTTTTCGCGTCGATCGCAAGAGCGAGAGAACCA
TCACTTTTTTGTTTGGTCCCGTGACCTATGTTCGTCGACGAATGAAAAATCAAGCCAATGACATTCGTTACCCCTTAGATGAATTTCTAGGGATTCGAAA
AGGTCTTCGTTATAGTTCGCTCGTCCTGCGAAATGTGGCTCAATTAGGCAGTAACATGGTCTATCGTCATGTTTCTCAAGCGATCGACTGTTTAACTTCT
TGGCAGATGAGTCATCAAAATGTGCAACAATTGGTGGTTAAAACGGGCGAATTCATCCAAGACAGGAGCACGCATGAAAGTCGTTACGACGGCGTGATCA
CCAAGAAAAAAGTGCCTTATTTATATCTGGAAGGAGACGGCGTAAAGATCAACGGGCAGAAGAAACAATCCCTTGAAGTTCACCGTTTTCAAGTGTGTGA
AGGCAGCCAGAAAGTCGGCAATCGCTCGGAAATGATCGCCCCGCACTTTGTGAGTCATCTGAATCGGCAAAAAGCATACAAAGAAATGATGGCCTATCTT
CAAGCCTATTATGATTTAAGTCATACCGTGGTCATTTCCAATAGTGACGGCGGTTCGGGTTATGAAAAAGCGGTGTTTGATGAACTGGCTTTAGGTTGTT
TGCGTCATGAACACTTCCGTGATCGATACCATGTCCATCGGAAAATCAAGGAACGAATGGCTTTTGTTCCCCAGCTCCAACATCGAATGATACGAGCGAT
TGAACATTATAATTGGCAAGCAGTCCAGCTGGTTTTAGATACTTCGGAAAGCTTGATTGAAGAAAAGGAAGCCGAGGCTTTAGAACATTTACGTTTACTG
CATCACTATCTTCAAAGAAGTTGGCCTTATTTAAAATCATTGAAAGCACGAGGAATCAGGGATTCCAAAGCTTGTATTGGCACGATCGAAAGTACCCATC
GAAAAATCACCTATCGCATGAAGCGCCAAGGTCGTTTGTGGACAACAACTGGGGCCCAAGCCATGATTCGTGTCATTGATAGTTTAAGAAACCAAGAATT
GGAAGGTTGGTTGAACCAATACGAAGCCCTTCCGAATGATGTGGTTGCCCAGGAAAAACGTTGGCACGCTATGAAACGTTGGGTACAGAAAAAGCCTCGT
TTCCAAGCCCATGAAGGTGCATTTAAAGGACAGATTGGCGAAGGAAAAGCGAAAAGTGCGCCTTTAGGCCAATTCGCCAAAGGATTAAATCAATTACTAA
TGACCCCGAGTTATCTCTAATAAAAACTTGTTTTTGTTAGAGATGATGAGGACAAACCGAACGAAAGTGAGGTTGAAAGATAACTTTGTGTCTGCCCCAA
AGACGGTTTTTTTATTCAACCTCAATAAACTTGACACATAC
TATGGATTCTATTGTAACAGATTTAGTGGAAGTAATGAAGAAGGAAACGAATTTTTTAGCAAGAGAAAGAGCCATGATGATCTTTTTTACAAAACTTATA
GCCACGATCACACAATTGGCTTTTCAAACGCTCGATAAAGAAATTTGTGCGCAATGTAAAAAAGAAGGTTTTCGCGTCGATCGCAAGAGCGAGAGAACCA
TCACTTTTTTGTTTGGTCCCGTGACCTATGTTCGTCGACGAATGAAAAATCAAGCCAATGACATTCGTTACCCCTTAGATGAATTTCTAGGGATTCGAAA
AGGTCTTCGTTATAGTTCGCTCGTCCTGCGAAATGTGGCTCAATTAGGCAGTAACATGGTCTATCGTCATGTTTCTCAAGCGATCGACTGTTTAACTTCT
TGGCAGATGAGTCATCAAAATGTGCAACAATTGGTGGTTAAAACGGGCGAATTCATCCAAGACAGGAGCACGCATGAAAGTCGTTACGACGGCGTGATCA
CCAAGAAAAAAGTGCCTTATTTATATCTGGAAGGAGACGGCGTAAAGATCAACGGGCAGAAGAAACAATCCCTTGAAGTTCACCGTTTTCAAGTGTGTGA
AGGCAGCCAGAAAGTCGGCAATCGCTCGGAAATGATCGCCCCGCACTTTGTGAGTCATCTGAATCGGCAAAAAGCATACAAAGAAATGATGGCCTATCTT
CAAGCCTATTATGATTTAAGTCATACCGTGGTCATTTCCAATAGTGACGGCGGTTCGGGTTATGAAAAAGCGGTGTTTGATGAACTGGCTTTAGGTTGTT
TGCGTCATGAACACTTCCGTGATCGATACCATGTCCATCGGAAAATCAAGGAACGAATGGCTTTTGTTCCCCAGCTCCAACATCGAATGATACGAGCGAT
TGAACATTATAATTGGCAAGCAGTCCAGCTGGTTTTAGATACTTCGGAAAGCTTGATTGAAGAAAAGGAAGCCGAGGCTTTAGAACATTTACGTTTACTG
CATCACTATCTTCAAAGAAGTTGGCCTTATTTAAAATCATTGAAAGCACGAGGAATCAGGGATTCCAAAGCTTGTATTGGCACGATCGAAAGTACCCATC
GAAAAATCACCTATCGCATGAAGCGCCAAGGTCGTTTGTGGACAACAACTGGGGCCCAAGCCATGATTCGTGTCATTGATAGTTTAAGAAACCAAGAATT
GGAAGGTTGGTTGAACCAATACGAAGCCCTTCCGAATGATGTGGTTGCCCAGGAAAAACGTTGGCACGCTATGAAACGTTGGGTACAGAAAAAGCCTCGT
TTCCAAGCCCATGAAGGTGCATTTAAAGGACAGATTGGCGAAGGAAAAGCGAAAAGTGCGCCTTTAGGCCAATTCGCCAAAGGATTAAATCAATTACTAA
TGACCCCGAGTTATCTCTAATAAAAACTTGTTTTTGTTAGAGATGATGAGGACAAACCGAACGAAAGTGAGGTTGAAAGATAACTTTGTGTCTGCCCCAA
AGACGGTTTTTTTATTCAACCTCAATAAACTTGACACATAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1419 bp | 472 aa | 102 | 1520 | + | No |
Chemistry : DDE
ORF sequence :
MDSIVTDLVEVMKKETNFLARERAMMIFFTKLIATITQLAFQTLDKEICAQCKKEGFRVDRKSERTITFLFGPVTYVRRRMKNQANDIRYPLDEFLGIRK
GLRYSSLVLRNVAQLGSNMVYRHVSQAIDCLTSWQMSHQNVQQLVVKTGEFIQDRSTHESRYDGVITKKKVPYLYLEGDGVKINGQKKQSLEVHRFQVCE
GSQKVGNRSEMIAPHFVSHLNRQKAYKEMMAYLQAYYDLSHTVVISNSDGGSGYEKAVFDELALGCLRHEHFRDRYHVHRKIKERMAFVPQLQHRMIRAI
EHYNWQAVQLVLDTSESLIEEKEAEALEHLRLLHHYLQRSWPYLKSLKARGIRDSKACIGTIESTHRKITYRMKRQGRLWTTTGAQAMIRVIDSLRNQEL
EGWLNQYEALPNDVVAQEKRWHAMKRWVQKKPRFQAHEGAFKGQIGEGKAKSAPLGQFAKGLNQLLMTPSYL
GLRYSSLVLRNVAQLGSNMVYRHVSQAIDCLTSWQMSHQNVQQLVVKTGEFIQDRSTHESRYDGVITKKKVPYLYLEGDGVKINGQKKQSLEVHRFQVCE
GSQKVGNRSEMIAPHFVSHLNRQKAYKEMMAYLQAYYDLSHTVVISNSDGGSGYEKAVFDELALGCLRHEHFRDRYHVHRKIKERMAFVPQLQHRMIRAI
EHYNWQAVQLVLDTSESLIEEKEAEALEHLRLLHHYLQRSWPYLKSLKARGIRDSKACIGTIESTHRKITYRMKRQGRLWTTTGAQAMIRVIDSLRNQEL
EGWLNQYEALPNDVVAQEKRWHAMKRWVQKKPRFQAHEGAFKGQIGEGKAKSAPLGQFAKGLNQLLMTPSYL
Blast result :
Comments
ISTeha1 is 60% aa similar to ISLcr2.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References