ISTco3

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AGFE01000004.1 ND Thermobacillus composti
Thermobacillus composti KWC4
DNA section
IS Length : 1578 bp

Ends


IR Length : 16/22

IRL : GTTAGAGTAAAATTAGCGTTGGGGTAAAGATTGGAAAAAGCGGACATAGA
IRR : GTCTGAGTCAAGTCAGCGTGGGCACCTTATTGGGGATGCTGGATCACAAC

Insertion site


Left flankDirect repeatRight flankDR Length
GGCGGCCTTCAATCTTTGCCATCCGTTCG9
GCGGAAAGCACCCGCACATTGTGCGTGT8
ACCTCATCAACCTGAAAAGGAATGATTTC9
TCAATTCCTCTAACTCGATG0

DNA sequence

GTTAGAGTAAAATTAGCGTTGGGGTAAAGATTGGAAAAAGCGGACATAGAAAGAGAGCCTCTCCTTTGGTAGAGTGGAATTTGGCAAAAAAACACCCTCA
AAGGAGGAGGCTCCTATGCAGCACTTTACCACAGCCATTCCTGCAATGAAAGAGCTTGAAGAGTGGATGTTCAGAAAGATGCAAGACATGTTCGTCGACG
CGATGAGAAGCACGCTGGAGATGTTGGATCAGATCATTTTGGAGCAAAGGGATCGAGAGCGGTATCGCGTCAAGGCTGAACGGGAGACCAGCGTGAATAC
GGTGTTTGGCAACATTCGCTTCAAGCGGAGATTGTACATGGATCGCCAAACCGGCAAACACGTGTACTTGCTCGACCAGCACATGCGATTTGAGGGGCGA
GGAAAAGTCAGCCCGCATTTGTTGGAAACAGCCATTGCCTTTGCCGCGGAAGGGCCGTCGTATCGTGACAGCGCCAGACGGCTTGAGCAACTGTTGGGCT
ATGCGGTGCTCAGCCATGAGGCGATTCGCGGGAAGCTGATCGAGCAAGCGGAGAAGCCGGTCAAAGCAACAGAAAAACGACCGGCCAAGGTGCTGTTCGT
GGAAGCGGATGGCCTGTACACGAAATTGCAACGGCGGAAGCGGAAAGGGATGGAACATGCGATTGCCGTGGTACATGAGGGCTGGGAGCAGGTCGGCAAG
CGTGTGCGGCTTAGGAACAAGCAGCATGATCTGCATCGGGGGGAGGGCGACTTTTGGGAAGCGTTTGGCGACTTTCTGACCGAACGGTACGAGATCGACG
GGGACACCTGGCTGGTGGTGGGCGGAGACGGAGCGAAGTGGATCGGGGAATGTGAATCGTACTTTCACAAGTGCATCTACACGCTGGATCGCTTCCATGT
GGCACGTGATCTGAAGCGGTTTGTGGGCCACCTGCCGAAGGTATGGAAAGAAGCAAGACAGGCGTTGGCCAGGCAGGAGCCGGCGGCCTTGATGGCGGCC
GTGGAGCGCGTGCCGATCGAAGCGATTGCGCCTGACAAACGGGAAGAATGGACCGCCTACCAGTCGTTCTTGAGGCGGCACCGCAAGCATCTGGAGGATT
ACCGGAAGACCCTTGAGGCACACGGTATCGATACGAGGGGTATGAGGCCGATGGGAAGCGCGGAAGCCCAGATGCGGGTGTTGGCGAAACGGACGAAGCG
CGGAGGATACAGCTGGAGTGAACGAGGCTGCAGGGCGATGCTGGAGACCGTCATGCGACGCAGGCAGATCGGCAGGTTGGAAGAAGCCGAGGAGCACGCA
GTTGAGTCCCCGCAACGTGTGGTTAGTGTACGGAGGTTGCTTCACGACGCCATACGACCGGCGAAAGGCTATGTTGACGGAATGATCCGACTGCTCAGAA
GCCAATGGCAAAGTCGCCCGACTGGAATGGCATTAAAAGGACTTAGAGGATACTGATACCAGGGATCTGGAGCAGTTCCTGAAGGAAGAAAAACTGAAAC
CGCTAACAAGGGATTGGCTCTTTTTTCGGTTGTGATCCAGCATCCCCAATAAGGTGCCCACGCTGACTTGACTCAGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1341 bp446 aa1161456+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQHFTTAIPAMKELEEWMFRKMQDMFVDAMRSTLEMLDQIILEQRDRERYRVKAERETSVNTVFGNIRFKRRLYMDRQTGKHVYLLDQHMRFEGRGKVSP
HLLETAIAFAAEGPSYRDSARRLEQLLGYAVLSHEAIRGKLIEQAEKPVKATEKRPAKVLFVEADGLYTKLQRRKRKGMEHAIAVVHEGWEQVGKRVRLR
NKQHDLHRGEGDFWEAFGDFLTERYEIDGDTWLVVGGDGAKWIGECESYFHKCIYTLDRFHVARDLKRFVGHLPKVWKEARQALARQEPAALMAAVERVP
IEAIAPDKREEWTAYQSFLRRHRKHLEDYRKTLEAHGIDTRGMRPMGSAEAQMRVLAKRTKRGGYSWSERGCRAMLETVMRRRQIGRLEEAEEHAVESPQ
RVVSVRRLLHDAIRPAKGYVDGMIRLLRSQWQSRPTGMALKGLRGY

 

Blast result :
Comments
ISTco3 is 82% aa similar to ISTco1.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References