ISTco3
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AGFE01000004.1 | ND | Thermobacillus composti | Thermobacillus composti KWC4 |
DNA section
IS Length : 1578 bp
Ends
IR Length : 16/22
IRL : GTTAGAGTAAAATTAGCGTTGGGGTAAAGATTGGAAAAAGCGGACATAGA
IRR : GTCTGAGTCAAGTCAGCGTGGGCACCTTATTGGGGATGCTGGATCACAAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCGGCCTTC | AATCTTTGC | CATCCGTTCG | 9 |
GCGGAAAGCA | CCCGCACA | TTGTGCGTGT | 8 |
ACCTCATCAA | CCTGAAAAG | GAATGATTTC | 9 |
TCAATTCCTC | TAACTCGATG | 0 |
DNA sequence
GTTAGAGTAAAATTAGCGTTGGGGTAAAGATTGGAAAAAGCGGACATAGAAAGAGAGCCTCTCCTTTGGTAGAGTGGAATTTGGCAAAAAAACACCCTCA
AAGGAGGAGGCTCCTATGCAGCACTTTACCACAGCCATTCCTGCAATGAAAGAGCTTGAAGAGTGGATGTTCAGAAAGATGCAAGACATGTTCGTCGACG
CGATGAGAAGCACGCTGGAGATGTTGGATCAGATCATTTTGGAGCAAAGGGATCGAGAGCGGTATCGCGTCAAGGCTGAACGGGAGACCAGCGTGAATAC
GGTGTTTGGCAACATTCGCTTCAAGCGGAGATTGTACATGGATCGCCAAACCGGCAAACACGTGTACTTGCTCGACCAGCACATGCGATTTGAGGGGCGA
GGAAAAGTCAGCCCGCATTTGTTGGAAACAGCCATTGCCTTTGCCGCGGAAGGGCCGTCGTATCGTGACAGCGCCAGACGGCTTGAGCAACTGTTGGGCT
ATGCGGTGCTCAGCCATGAGGCGATTCGCGGGAAGCTGATCGAGCAAGCGGAGAAGCCGGTCAAAGCAACAGAAAAACGACCGGCCAAGGTGCTGTTCGT
GGAAGCGGATGGCCTGTACACGAAATTGCAACGGCGGAAGCGGAAAGGGATGGAACATGCGATTGCCGTGGTACATGAGGGCTGGGAGCAGGTCGGCAAG
CGTGTGCGGCTTAGGAACAAGCAGCATGATCTGCATCGGGGGGAGGGCGACTTTTGGGAAGCGTTTGGCGACTTTCTGACCGAACGGTACGAGATCGACG
GGGACACCTGGCTGGTGGTGGGCGGAGACGGAGCGAAGTGGATCGGGGAATGTGAATCGTACTTTCACAAGTGCATCTACACGCTGGATCGCTTCCATGT
GGCACGTGATCTGAAGCGGTTTGTGGGCCACCTGCCGAAGGTATGGAAAGAAGCAAGACAGGCGTTGGCCAGGCAGGAGCCGGCGGCCTTGATGGCGGCC
GTGGAGCGCGTGCCGATCGAAGCGATTGCGCCTGACAAACGGGAAGAATGGACCGCCTACCAGTCGTTCTTGAGGCGGCACCGCAAGCATCTGGAGGATT
ACCGGAAGACCCTTGAGGCACACGGTATCGATACGAGGGGTATGAGGCCGATGGGAAGCGCGGAAGCCCAGATGCGGGTGTTGGCGAAACGGACGAAGCG
CGGAGGATACAGCTGGAGTGAACGAGGCTGCAGGGCGATGCTGGAGACCGTCATGCGACGCAGGCAGATCGGCAGGTTGGAAGAAGCCGAGGAGCACGCA
GTTGAGTCCCCGCAACGTGTGGTTAGTGTACGGAGGTTGCTTCACGACGCCATACGACCGGCGAAAGGCTATGTTGACGGAATGATCCGACTGCTCAGAA
GCCAATGGCAAAGTCGCCCGACTGGAATGGCATTAAAAGGACTTAGAGGATACTGATACCAGGGATCTGGAGCAGTTCCTGAAGGAAGAAAAACTGAAAC
CGCTAACAAGGGATTGGCTCTTTTTTCGGTTGTGATCCAGCATCCCCAATAAGGTGCCCACGCTGACTTGACTCAGAC
AAGGAGGAGGCTCCTATGCAGCACTTTACCACAGCCATTCCTGCAATGAAAGAGCTTGAAGAGTGGATGTTCAGAAAGATGCAAGACATGTTCGTCGACG
CGATGAGAAGCACGCTGGAGATGTTGGATCAGATCATTTTGGAGCAAAGGGATCGAGAGCGGTATCGCGTCAAGGCTGAACGGGAGACCAGCGTGAATAC
GGTGTTTGGCAACATTCGCTTCAAGCGGAGATTGTACATGGATCGCCAAACCGGCAAACACGTGTACTTGCTCGACCAGCACATGCGATTTGAGGGGCGA
GGAAAAGTCAGCCCGCATTTGTTGGAAACAGCCATTGCCTTTGCCGCGGAAGGGCCGTCGTATCGTGACAGCGCCAGACGGCTTGAGCAACTGTTGGGCT
ATGCGGTGCTCAGCCATGAGGCGATTCGCGGGAAGCTGATCGAGCAAGCGGAGAAGCCGGTCAAAGCAACAGAAAAACGACCGGCCAAGGTGCTGTTCGT
GGAAGCGGATGGCCTGTACACGAAATTGCAACGGCGGAAGCGGAAAGGGATGGAACATGCGATTGCCGTGGTACATGAGGGCTGGGAGCAGGTCGGCAAG
CGTGTGCGGCTTAGGAACAAGCAGCATGATCTGCATCGGGGGGAGGGCGACTTTTGGGAAGCGTTTGGCGACTTTCTGACCGAACGGTACGAGATCGACG
GGGACACCTGGCTGGTGGTGGGCGGAGACGGAGCGAAGTGGATCGGGGAATGTGAATCGTACTTTCACAAGTGCATCTACACGCTGGATCGCTTCCATGT
GGCACGTGATCTGAAGCGGTTTGTGGGCCACCTGCCGAAGGTATGGAAAGAAGCAAGACAGGCGTTGGCCAGGCAGGAGCCGGCGGCCTTGATGGCGGCC
GTGGAGCGCGTGCCGATCGAAGCGATTGCGCCTGACAAACGGGAAGAATGGACCGCCTACCAGTCGTTCTTGAGGCGGCACCGCAAGCATCTGGAGGATT
ACCGGAAGACCCTTGAGGCACACGGTATCGATACGAGGGGTATGAGGCCGATGGGAAGCGCGGAAGCCCAGATGCGGGTGTTGGCGAAACGGACGAAGCG
CGGAGGATACAGCTGGAGTGAACGAGGCTGCAGGGCGATGCTGGAGACCGTCATGCGACGCAGGCAGATCGGCAGGTTGGAAGAAGCCGAGGAGCACGCA
GTTGAGTCCCCGCAACGTGTGGTTAGTGTACGGAGGTTGCTTCACGACGCCATACGACCGGCGAAAGGCTATGTTGACGGAATGATCCGACTGCTCAGAA
GCCAATGGCAAAGTCGCCCGACTGGAATGGCATTAAAAGGACTTAGAGGATACTGATACCAGGGATCTGGAGCAGTTCCTGAAGGAAGAAAAACTGAAAC
CGCTAACAAGGGATTGGCTCTTTTTTCGGTTGTGATCCAGCATCCCCAATAAGGTGCCCACGCTGACTTGACTCAGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1341 bp | 446 aa | 116 | 1456 | + | No |
Chemistry : DDE
ORF sequence :
MQHFTTAIPAMKELEEWMFRKMQDMFVDAMRSTLEMLDQIILEQRDRERYRVKAERETSVNTVFGNIRFKRRLYMDRQTGKHVYLLDQHMRFEGRGKVSP
HLLETAIAFAAEGPSYRDSARRLEQLLGYAVLSHEAIRGKLIEQAEKPVKATEKRPAKVLFVEADGLYTKLQRRKRKGMEHAIAVVHEGWEQVGKRVRLR
NKQHDLHRGEGDFWEAFGDFLTERYEIDGDTWLVVGGDGAKWIGECESYFHKCIYTLDRFHVARDLKRFVGHLPKVWKEARQALARQEPAALMAAVERVP
IEAIAPDKREEWTAYQSFLRRHRKHLEDYRKTLEAHGIDTRGMRPMGSAEAQMRVLAKRTKRGGYSWSERGCRAMLETVMRRRQIGRLEEAEEHAVESPQ
RVVSVRRLLHDAIRPAKGYVDGMIRLLRSQWQSRPTGMALKGLRGY
HLLETAIAFAAEGPSYRDSARRLEQLLGYAVLSHEAIRGKLIEQAEKPVKATEKRPAKVLFVEADGLYTKLQRRKRKGMEHAIAVVHEGWEQVGKRVRLR
NKQHDLHRGEGDFWEAFGDFLTERYEIDGDTWLVVGGDGAKWIGECESYFHKCIYTLDRFHVARDLKRFVGHLPKVWKEARQALARQEPAALMAAVERVP
IEAIAPDKREEWTAYQSFLRRHRKHLEDYRKTLEAHGIDTRGMRPMGSAEAQMRVLAKRTKRGGYSWSERGCRAMLETVMRRRQIGRLEEAEEHAVESPQ
RVVSVRRLLHDAIRPAKGYVDGMIRLLRSQWQSRPTGMALKGLRGY
Blast result :
Comments
ISTco3 is 82% aa similar to ISTco1.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References