ISMme1

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_CAUM01000027 ND Mesorhizobium metallidurans
Mesorhizobium metallidurans STM 2683
DNA section
IS Length : 1324 bp

Ends


IR Length : 15/18

IRL : GGGCTCGTTGATAAATAACTGAATCGGTATGCGGGTTTTTTGGGTTGGGG
IRR : GGTCTTGTTGATAAATTATCGCACCATATTGGGTTGCGGTTTGATGGTGT

Insertion site


Left flankDirect repeatRight flankDR Length
GCCAGCGCTCTAAGGTTTATCCC3

DNA sequence

GGGCTCGTTGATAAATAACTGAATCGGTATGCGGGTTTTTTGGGTTGGGGGATTCCCCTGCCGAATCGGCGCAGCTAGATTCCGGTCTGTGATCGACGAT
AGCGCCATTCGGTTGCGGTTTGGAGCCCTTGATCCATTGTTGGACGAGCGGGGTCGGCGGCGTTTTGCGGCGGCCGAGGCGCTGGCGGCCGGCCATGGCG
GCGTGATGGCGGTCTCGCGGGCGACGGGGATTGCGCGCAGCACGATCACTCGGGGCCTGGCCGAACTGCGCGAGGAAGCGGTCCTGGCAGTCCCTCTGGA
TCGGGTGCGCCGGGCGGGCGGTGGCAGAAAGTCCCTGACGGCGACGGACGAGACGCTGCTGGGAGATCTCCAGGCGCTCGTCGATCCCGTCACGCGCGGT
GATCCGATGGCGCCGCTGCTGTGGACCGCCAAAAGCCTGCGCAACCTGGCCGCCGAGTTGCAGGCGTGCGGGCACCGCATCGGCCATAATGTGGTGGCCA
CGCTGTTGCGCGAGCTGGGCTACAGCCTGCAGGCCAATCGCAAGACGCTCGAAGGCGCCAGCCACCCCGACCGCGACGCCCAGTTCCACTACATCAACGA
TCAGGTGAAAGCGGCGCTGGCGGCCGATCAGCCCGCCATCTCGGTCGATACCAAGAAGAAGGAACTGGTCGGCGACTTCAAGAACAACGGCCGGGAATAT
CGTCCCAAGGGCGATCCGGAAAAGGTCCGGGTGCATGACTTCAAGATCCCCGAGCTTGGCCGGGCGGCACCCTACGGGGTCTACGACATCGCCGACAATG
CCGGTTGGGTCAGCGTCGGTATCGACCATGATACCGCCAGCTTCGCCGTCAACTCGATCCGCCGCTGGTGGCAGACCATGGGCCAGCAACGCTATCCCAA
CGCCCGACAACTGCTGATCTCCGCCGATGGCGGCGGCAGCAACGGCTCACGCGTACGGCTGTGGAAGATCGAGCTTCAGAGCCTCGCCAACGAACTCGAT
ATCGACATCACCGTCTGTCATCTCCCGCCCGGCGCCAGCAAGTGGAACAAGATCGAGCACCGCCTCTTCTCGTTCATCACCCAGAACTGGCGCGGCCGGC
CGCTCGTCAGCTACCAGACAATCGTTCAGTTGATTGCAGCGACAACCACCAAAGCCGGCCTCACCGTCCGCAGCGAACTCGATACCAACGCCTACCCAAA
GGGCATCAAGGTCGCCGATGCCGACATCGACGCCCTCAATCTCCATCGCCACGACTTCCATGGCGACTGGAATTACACCATCAAACCGCAACCCAATATG
GTGCGATAATTTATCAACAAGACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1221 bp406 aa891309+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MIDDSAIRLRFGALDPLLDERGRRRFAAAEALAAGHGGVMAVSRATGIARSTITRGLAELREEAVLAVPLDRVRRAGGGRKSLTATDETLLGDLQALVDP
VTRGDPMAPLLWTAKSLRNLAAELQACGHRIGHNVVATLLRELGYSLQANRKTLEGASHPDRDAQFHYINDQVKAALAADQPAISVDTKKKELVGDFKNN
GREYRPKGDPEKVRVHDFKIPELGRAAPYGVYDIADNAGWVSVGIDHDTASFAVNSIRRWWQTMGQQRYPNARQLLISADGGGSNGSRVRLWKIELQSLA
NELDIDITVCHLPPGASKWNKIEHRLFSFITQNWRGRPLVSYQTIVQLIAATTTKAGLTVRSELDTNAYPKGIKVADADIDALNLHRHDFHGDWNYTIKP
QPNMVR

 

Blast result :
Comments
ISMme1 is 75% aa similar to ISDssp1.
References
1] ISfinder annotation (2013)
2] Genoscope, C.E.A. (2013) Direct submission GenBank.