ISLhe11
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_017467 | ND | Lactobacillus helveticus | Lactobacillus kefiranofaciens ZW3 Lactobacillus helveticus H10 Lactobacillus kefiranofaciens ZW3 plasmid pWW1 |
DNA section
IS Length : 1597 bp
Ends
IR Length : 18/24
IRL : CTAAGTGTAAAATAGTTTGCGGTAACGTTTAAATATAAATTAAAAGGAGT
IRR : GTAAGTGTCAATATTTTTGCGGTAGTCCAAAAACCATTAGGCTGACCTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAGCCCTGTC | TTAATTTGT | TACCACATTG | 9 |
AAATAAAATG | CTAAATTCTT | 0 | |
AACCAACCGT | AAACTGCTTT | 0 | |
AACCAACCGT | GCAAGGTAGT | 0 |
DNA sequence
CTAAGTGTAAAATAGTTTGCGGTAACGTTTAAATATAAATTAAAAGGAGTCAAATCCATTTCAGGACTTGACTCCAAAACAAAAAGACCAGTAGTCTGAT
GCTAAGCAAAAAAACACATTAGAAGCTGGTCTTTTATGGAATTAAGTGTAACTGAAATCGTCAAAATTATAAAGTCTGAAACTAATATTATTAAGCGTGA
AAAAGCTATAGCCTTTTTCTTTCTCAATTTGATCAGAGAATTGATGTCCTTAGCCTTGGAACGAGCAGATCAAGAGCTAAGTGAATCAATGAAGAATCAG
GGCTACCAAATTGAAAAGAAGAATCAACGTTCAATCAATATGGCTTTTGGCGAAGCGACTTATGTCAGAAGAAGGTACGTTAAAGCTGGGCAAGAAAGTC
GCTATCCTTTAGATAAATTCATGGGCTTTGATAAGTACAAGCATTATAGCGTCTTGGCAGTAAGAAATATCCTGGCAGTAAGCAGCGTCGCTGCTTATCG
CAATACTGCCTTAGCTGTTAATTGTCTTTCGGGTTTTAATATTAGTCACGCTCAGATTGGCAATTTAGTTAAGACTGCAGGTCAAAAGATCAAAGAGCAA
CAAGAAGCTGATAGTCGTTATGATGCTCAAACTGCAAAGAAGCAAGTGCCAGTTCTTTGTCTTGAAGGCGATGGCGTCATGATTAAAGGCACTCAAGGAC
GATTTGAGTTTCATCGCTATCAAGTTTGTGAAGGATTACGTAATGTGACCTGCAAACGTAGAGAGCGGACTAATGCCAAAGAATTTGTGTCATTAAGTCG
TCTAGACGCTTTGAATGAAGCTAAGGAATATATAGCTAACACTTATGATTTAGCTAATACCTTGATCATCAGTAATGCCGATGGTGGTGCTGGTTACGCG
AAAAAGGACTTTGATGAAATTGTCGGTCGTTGCGCTAAACATGAGCACTTTTTGGATGTCTTCCATTTGAACAAAAAGATTAAAGACCGACTTTGTTTCG
CTCCAGAACTGCAAGGCAAATTGATTTATGCCTTAGAGTTCAAATATGACCGCGATTTAGTGAATATAATTCTTGATACTGCCGAAAGCAAACTAATTGA
TGAGTTAGATACACCACAAAATCACGAGCATTTAGCACGGCTTCGCAGCTATATTAATCGACGCTGGGACAACATTAAACCGTTTAAAATGCGTAATTTG
AAGGTTACTAAGGCAATTGGCAGCTGTGAAAGCAATCGCCGTAAGTACACTTATCGTGTTAAAGGCCAAGGCAAATACTGGTCTGAAGCTGGAGCAGAAG
GCATGCTTCGGATTTTGGCCTGTATCAAGAATCGTGACTTAGAACAATGGCTAAATAGTGATTTTGAAGCAGGCAAATTAATCAGCTTAGATCACAAGAA
GCTGCTGGCAGCGGCCAGAGACAGCTTGAAGCGTCGCCATGAAATTCATGTTGGCATTCAACACGGAGCACTAACAGCAGAGGCTGTCGGGGGAAGCTAT
TTAGCTAAATTAGATCGAATGTTAAACCACATAAAATATTAAGAAATTAAGGTCAGCCTAATGGTTTTTGGACTACCGCAAAAATATTGACACTTAC
GCTAAGCAAAAAAACACATTAGAAGCTGGTCTTTTATGGAATTAAGTGTAACTGAAATCGTCAAAATTATAAAGTCTGAAACTAATATTATTAAGCGTGA
AAAAGCTATAGCCTTTTTCTTTCTCAATTTGATCAGAGAATTGATGTCCTTAGCCTTGGAACGAGCAGATCAAGAGCTAAGTGAATCAATGAAGAATCAG
GGCTACCAAATTGAAAAGAAGAATCAACGTTCAATCAATATGGCTTTTGGCGAAGCGACTTATGTCAGAAGAAGGTACGTTAAAGCTGGGCAAGAAAGTC
GCTATCCTTTAGATAAATTCATGGGCTTTGATAAGTACAAGCATTATAGCGTCTTGGCAGTAAGAAATATCCTGGCAGTAAGCAGCGTCGCTGCTTATCG
CAATACTGCCTTAGCTGTTAATTGTCTTTCGGGTTTTAATATTAGTCACGCTCAGATTGGCAATTTAGTTAAGACTGCAGGTCAAAAGATCAAAGAGCAA
CAAGAAGCTGATAGTCGTTATGATGCTCAAACTGCAAAGAAGCAAGTGCCAGTTCTTTGTCTTGAAGGCGATGGCGTCATGATTAAAGGCACTCAAGGAC
GATTTGAGTTTCATCGCTATCAAGTTTGTGAAGGATTACGTAATGTGACCTGCAAACGTAGAGAGCGGACTAATGCCAAAGAATTTGTGTCATTAAGTCG
TCTAGACGCTTTGAATGAAGCTAAGGAATATATAGCTAACACTTATGATTTAGCTAATACCTTGATCATCAGTAATGCCGATGGTGGTGCTGGTTACGCG
AAAAAGGACTTTGATGAAATTGTCGGTCGTTGCGCTAAACATGAGCACTTTTTGGATGTCTTCCATTTGAACAAAAAGATTAAAGACCGACTTTGTTTCG
CTCCAGAACTGCAAGGCAAATTGATTTATGCCTTAGAGTTCAAATATGACCGCGATTTAGTGAATATAATTCTTGATACTGCCGAAAGCAAACTAATTGA
TGAGTTAGATACACCACAAAATCACGAGCATTTAGCACGGCTTCGCAGCTATATTAATCGACGCTGGGACAACATTAAACCGTTTAAAATGCGTAATTTG
AAGGTTACTAAGGCAATTGGCAGCTGTGAAAGCAATCGCCGTAAGTACACTTATCGTGTTAAAGGCCAAGGCAAATACTGGTCTGAAGCTGGAGCAGAAG
GCATGCTTCGGATTTTGGCCTGTATCAAGAATCGTGACTTAGAACAATGGCTAAATAGTGATTTTGAAGCAGGCAAATTAATCAGCTTAGATCACAAGAA
GCTGCTGGCAGCGGCCAGAGACAGCTTGAAGCGTCGCCATGAAATTCATGTTGGCATTCAACACGGAGCACTAACAGCAGAGGCTGTCGGGGGAAGCTAT
TTAGCTAAATTAGATCGAATGTTAAACCACATAAAATATTAAGAAATTAAGGTCAGCCTAATGGTTTTTGGACTACCGCAAAAATATTGACACTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1407 bp | 468 aa | 136 | 1542 | + | No |
Chemistry : DDE
ORF sequence :
MELSVTEIVKIIKSETNIIKREKAIAFFFLNLIRELMSLALERADQELSESMKNQGYQIEKKNQRSINMAFGEATYVRRRYVKAGQESRYPLDKFMGFDK
YKHYSVLAVRNILAVSSVAAYRNTALAVNCLSGFNISHAQIGNLVKTAGQKIKEQQEADSRYDAQTAKKQVPVLCLEGDGVMIKGTQGRFEFHRYQVCEG
LRNVTCKRRERTNAKEFVSLSRLDALNEAKEYIANTYDLANTLIISNADGGAGYAKKDFDEIVGRCAKHEHFLDVFHLNKKIKDRLCFAPELQGKLIYAL
EFKYDRDLVNIILDTAESKLIDELDTPQNHEHLARLRSYINRRWDNIKPFKMRNLKVTKAIGSCESNRRKYTYRVKGQGKYWSEAGAEGMLRILACIKNR
DLEQWLNSDFEAGKLISLDHKKLLAAARDSLKRRHEIHVGIQHGALTAEAVGGSYLAKLDRMLNHIKY
YKHYSVLAVRNILAVSSVAAYRNTALAVNCLSGFNISHAQIGNLVKTAGQKIKEQQEADSRYDAQTAKKQVPVLCLEGDGVMIKGTQGRFEFHRYQVCEG
LRNVTCKRRERTNAKEFVSLSRLDALNEAKEYIANTYDLANTLIISNADGGAGYAKKDFDEIVGRCAKHEHFLDVFHLNKKIKDRLCFAPELQGKLIYAL
EFKYDRDLVNIILDTAESKLIDELDTPQNHEHLARLRSYINRRWDNIKPFKMRNLKVTKAIGSCESNRRKYTYRVKGQGKYWSEAGAEGMLRILACIKNR
DLEQWLNSDFEAGKLISLDHKKLLAAARDSLKRRHEIHVGIQHGALTAEAVGGSYLAKLDRMLNHIKY
Blast result :
Comments
ISLhe11 is 84% aa similar to ISLcr2.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References