ISNagr12
- Family IS5
- Group ISH1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP003377 | ND | Natronobacterium gregoryi | Natronobacterium gregoryi SP2 |
DNA section
IS Length : 940 bp
Ends
IR Length : 18/23
IRL : GGCTGTGTTGAATCACTAGACGGTGTCGGGGAAGGTCAGTAAATCGAAGG
IRR : GGCTCTGTTGAATCGCTGTAAGGCGGTGGATTTCACTGTTTGACGGCACG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCTAGTGATATC | GCTCAAACGGAA | 0 |
DNA sequence
GGCTGTGTTGAATCACTAGACGGTGTCGGGGAAGGTCAGTAAATCGAAGGAGTTGAAGCGGGAAAATTTGGTTGTCCATAACACAAATCTCCCGCTTCAC
CGAGCGTTGTGTCTCGATTGCTCAAAGAGTTACGGGTGAACGAGACGAATCCGCCGCCCCGAAGGGTGGCGGCGGGTTCGCCGACTATGCCCTCGTTTCG
CTGCATTGTCTCCGAATTTACCTCGATACCTCCTACCGAATGACGATCGATCTGCTGAAGGAAATGACGCAAATAACAGGGGAGATCGGCTTTGACGAGG
CCGATCTCCCCGCACCTTCCACGCTGTGTAAGGCGTTTGATCGGATCGAGATGAGCGTCTGTCGAGTGCTGCTGCGCCAGTCGGCGCAGCTGCACGACCT
CTCTGAACATGCTGCAATCGATGCAACATTCTATGAACGAGATCGTGCCAGTCGTCACCACTGCCAACGAACGAATTATCGCGTTCAGACGCTCAAAGTG
ACAAAGCTCGTAGACACAGCAACGCAAGCTGTGCTTGATCTTCACTGCTCGACAACGTTAGAAGGTAGCGACGCAGACCTCTGTGAGCAGATTGCCCGCC
GAAATGCGGGCGATCTGCGGTCTCTAGCCGCTGACAAGGGCTATGACAAGCAACAACTCCGCGACCGACTCCGTGAACTCGACATTCGCCCGCTGATCAA
ATACCGGATCTTCGTGCCGTACGATCACGCACACAACGCCCGTATTGACGAAGATCGGTACGCTCAGCGGTCAATGACCGAAACCGTCAACTCCGCCGTC
AAGCGCTCGCTCGGCTACGCCGTGCGAGCGCGTAGCTGGTATCGAGAGTTCCGTGAAATCGCTCTGATGTGTGTCGTCTACAACATCAAACGTGCCGTCA
AACAGTGAAATCCACCGCCTTACAGCGATTCAACAGAGCC
CGAGCGTTGTGTCTCGATTGCTCAAAGAGTTACGGGTGAACGAGACGAATCCGCCGCCCCGAAGGGTGGCGGCGGGTTCGCCGACTATGCCCTCGTTTCG
CTGCATTGTCTCCGAATTTACCTCGATACCTCCTACCGAATGACGATCGATCTGCTGAAGGAAATGACGCAAATAACAGGGGAGATCGGCTTTGACGAGG
CCGATCTCCCCGCACCTTCCACGCTGTGTAAGGCGTTTGATCGGATCGAGATGAGCGTCTGTCGAGTGCTGCTGCGCCAGTCGGCGCAGCTGCACGACCT
CTCTGAACATGCTGCAATCGATGCAACATTCTATGAACGAGATCGTGCCAGTCGTCACCACTGCCAACGAACGAATTATCGCGTTCAGACGCTCAAAGTG
ACAAAGCTCGTAGACACAGCAACGCAAGCTGTGCTTGATCTTCACTGCTCGACAACGTTAGAAGGTAGCGACGCAGACCTCTGTGAGCAGATTGCCCGCC
GAAATGCGGGCGATCTGCGGTCTCTAGCCGCTGACAAGGGCTATGACAAGCAACAACTCCGCGACCGACTCCGTGAACTCGACATTCGCCCGCTGATCAA
ATACCGGATCTTCGTGCCGTACGATCACGCACACAACGCCCGTATTGACGAAGATCGGTACGCTCAGCGGTCAATGACCGAAACCGTCAACTCCGCCGTC
AAGCGCTCGCTCGGCTACGCCGTGCGAGCGCGTAGCTGGTATCGAGAGTTCCGTGAAATCGCTCTGATGTGTGTCGTCTACAACATCAAACGTGCCGTCA
AACAGTGAAATCCACCGCCTTACAGCGATTCAACAGAGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 9014 bp | 278 aa | 72 | 9085 | + | No |
Chemistry : DDE
ORF sequence :
MSITQISRFTERCVSIAQRVTGERDESAAPKGGGGFADYALVSLHCLRIYLDTSYRMTIDLLKEMTQITGEIGFDEADLPAPSTLCKAFDRIEMSVCRVL
LRQSAQLHDLSEHAAIDATFYERDRASRHHCQRTNYRVQTLKVTKLVDTATQAVLDLHCSTTLEGSDADLCEQIARRNAGDLRSLAADKGYDKQQLRDRL
RELDIRPLIKYRIFVPYDHAHNARIDEDRYAQRSMTETVNSAVKRSLGYAVRARSWYREFREIALMCVVYNIKRAVKQ
LRQSAQLHDLSEHAAIDATFYERDRASRHHCQRTNYRVQTLKVTKLVDTATQAVLDLHCSTTLEGSDADLCEQIARRNAGDLRSLAADKGYDKQQLRDRL
RELDIRPLIKYRIFVPYDHAHNARIDEDRYAQRSMTETVNSAVKRSLGYAVRARSWYREFREIALMCVVYNIKRAVKQ
Blast result :
Comments
ISNagr12 is 91% aa similar to ISHwa3.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank.