ISThth1
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_019970 | ND | Thermoanaerobacterium thermosaccharolyticum | Thermoanaerobacterium thermosaccharolyticum M0795 |
DNA section
IS Length : 1446 bp
Ends
IR Length : 34/47
IRL : GAAGATGTCCGAAATTCCGTGGAATTTGAAGTAGCGGTTCCTGCCTCTAA
IRR : GAGGTTGTCCCAAACGTCGTAGAATTTCTGTAGCGCATCCTACCTCATTA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACCGCATTCC | GGGTAATT | ATAATTTAAA | 8 |
DNA sequence
GAAGATGTCCGAAATTCCGTGGAATTTGAAGTAGCGGTTCCTGCCTCTAAAGGTATATAATATACCTAGTAGAAATACAAAAAGAGGAGGAACCGTTTAA
TGGAAGTATATCACAATACTAAGGTCGTTGACAAGAATATTTCGCCCCAAATTATGGCGGCAGCTTGCCCTAACATTAACCAAGAACAAATAAATAACCT
GCTGCAAGCTGTCAAAGAAGGCCTTCTTGCCTTCTCGGTAACCGTTGCCTCAATGTTATCAAGACCATGATGGAAGAAGAAGTAACCCAATATGTAGGAC
CAAAAGGCAAACATAACTCAGAGCGCAAAGCGTATCGTCATGGCAAAGAACAGGGACAGATAGTATTGGGTGGCCGTAAAGTCAAAATAGAACATCCACG
GGTCCGCACTATTGATGGTAAGGAGCTGGTGTTACAAACATATAAAATGTTTCACGATGAAGATATATTAGGCCAAATGGCTATGGAACGCATGTTATAT
GGACTATCCACCAGGCAATACAGCAAAGGATTGGAGCCTGTAGGAAGCTCGTTGGATGTAAAAGACATATCTAAAAGCACAATAAGCCGCCACTTTATTG
AACGCACAAAAACAGCATTATCGGAGATGTTAACCAGGCGTTTAGATAGTCTAGATATAGTGGCTCTATACATAGACGGCGTAGTAATGGCTGATCATAC
AGTAATAGTGGCTATGGGGCTAGATAGCGATGGGTATAAACATATACTCGGTTTATGGGAAGGGGCTACGGAGAATGCCACCATTTGTAAACAACTATTA
ACAGATTTAGTGGATAGAGGGCTATGTAGCGATAAAGGACTGTTGGTTATAATAGACGGTTCAAAAGCCTTAAGAGCCGCTGTTAGAGATACGTTTGGCC
AAAATGCCTTGGTCCAGCGTTGCCAGGTACATAAGAAGCGCAATGTGCTGGACCATTTACCTGAAAACCAACATGATTGGGTTAAACGCAAGCTGGATAA
AGCATGGAACATAGAAGATGCCTCAAGAGCAGAAAAAGAACTAAAAGCATTAGCTAACGAACTGCACAAAGACTATCCAGGGGCAGCAGCCAGCCTTTTA
GAAGGTTTAGAAGAAACCCTCACAGTGAAACGTTTAGGGTTACCCGATCTTTTAACCAGGACATTGTCTTCCACTAATCCGATAGAATCAGCGTTTGATA
TAGTACGCAGTTTAAGCCGAAATGTAAAACGGTGGAAGAATGGCGAACAGGTGCTAAGATGGAGTGCAGCGGGGCTATTGGAAGCAGAAAAACACTTTCA
CAGGATAAATGGTTACAAAGATATACCAATCTTAAGGGAAGCGTTGTCTTGGAATATAGATGGGATAAAATCCCATGAAGGAGCATTAGCATGAAATAAT
GAGGTAGGATGCGCTACAGAAATTCTACGACGTTTGGGACAACCTC
TGGAAGTATATCACAATACTAAGGTCGTTGACAAGAATATTTCGCCCCAAATTATGGCGGCAGCTTGCCCTAACATTAACCAAGAACAAATAAATAACCT
GCTGCAAGCTGTCAAAGAAGGCCTTCTTGCCTTCTCGGTAACCGTTGCCTCAATGTTATCAAGACCATGATGGAAGAAGAAGTAACCCAATATGTAGGAC
CAAAAGGCAAACATAACTCAGAGCGCAAAGCGTATCGTCATGGCAAAGAACAGGGACAGATAGTATTGGGTGGCCGTAAAGTCAAAATAGAACATCCACG
GGTCCGCACTATTGATGGTAAGGAGCTGGTGTTACAAACATATAAAATGTTTCACGATGAAGATATATTAGGCCAAATGGCTATGGAACGCATGTTATAT
GGACTATCCACCAGGCAATACAGCAAAGGATTGGAGCCTGTAGGAAGCTCGTTGGATGTAAAAGACATATCTAAAAGCACAATAAGCCGCCACTTTATTG
AACGCACAAAAACAGCATTATCGGAGATGTTAACCAGGCGTTTAGATAGTCTAGATATAGTGGCTCTATACATAGACGGCGTAGTAATGGCTGATCATAC
AGTAATAGTGGCTATGGGGCTAGATAGCGATGGGTATAAACATATACTCGGTTTATGGGAAGGGGCTACGGAGAATGCCACCATTTGTAAACAACTATTA
ACAGATTTAGTGGATAGAGGGCTATGTAGCGATAAAGGACTGTTGGTTATAATAGACGGTTCAAAAGCCTTAAGAGCCGCTGTTAGAGATACGTTTGGCC
AAAATGCCTTGGTCCAGCGTTGCCAGGTACATAAGAAGCGCAATGTGCTGGACCATTTACCTGAAAACCAACATGATTGGGTTAAACGCAAGCTGGATAA
AGCATGGAACATAGAAGATGCCTCAAGAGCAGAAAAAGAACTAAAAGCATTAGCTAACGAACTGCACAAAGACTATCCAGGGGCAGCAGCCAGCCTTTTA
GAAGGTTTAGAAGAAACCCTCACAGTGAAACGTTTAGGGTTACCCGATCTTTTAACCAGGACATTGTCTTCCACTAATCCGATAGAATCAGCGTTTGATA
TAGTACGCAGTTTAAGCCGAAATGTAAAACGGTGGAAGAATGGCGAACAGGTGCTAAGATGGAGTGCAGCGGGGCTATTGGAAGCAGAAAAACACTTTCA
CAGGATAAATGGTTACAAAGATATACCAATCTTAAGGGAAGCGTTGTCTTGGAATATAGATGGGATAAAATCCCATGAAGGAGCATTAGCATGAAATAAT
GAGGTAGGATGCGCTACAGAAATTCTACGACGTTTGGGACAACCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1128 bp | 375 aa | 267 | 1394 | + | No |
Chemistry : DDE
ORF sequence :
MMEEEVTQYVGPKGKHNSERKAYRHGKEQGQIVLGGRKVKIEHPRVRTIDGKELVLQTYKMFHDEDILGQMAMERMLYGLSTRQYSKGLEPVGSSLDVKD
ISKSTISRHFIERTKTALSEMLTRRLDSLDIVALYIDGVVMADHTVIVAMGLDSDGYKHILGLWEGATENATICKQLLTDLVDRGLCSDKGLLVIIDGSK
ALRAAVRDTFGQNALVQRCQVHKKRNVLDHLPENQHDWVKRKLDKAWNIEDASRAEKELKALANELHKDYPGAAASLLEGLEETLTVKRLGLPDLLTRTL
SSTNPIESAFDIVRSLSRNVKRWKNGEQVLRWSAAGLLEAEKHFHRINGYKDIPILREALSWNIDGIKSHEGALA
ISKSTISRHFIERTKTALSEMLTRRLDSLDIVALYIDGVVMADHTVIVAMGLDSDGYKHILGLWEGATENATICKQLLTDLVDRGLCSDKGLLVIIDGSK
ALRAAVRDTFGQNALVQRCQVHKKRNVLDHLPENQHDWVKRKLDKAWNIEDASRAEKELKALANELHKDYPGAAASLLEGLEETLTVKRLGLPDLLTRTL
SSTNPIESAFDIVRSLSRNVKRWKNGEQVLRWSAAGLLEAEKHFHRINGYKDIPILREALSWNIDGIKSHEGALA
Blast result :
Comments
ISThth1 is 66% aa similar to ISBsa1.
References
1] ISfinder annotation (2013)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Feinberg,L., Folden,J., Hogsett,D., Shaw,J. and Woyke,T. (2012) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Feinberg,L., Folden,J., Hogsett,D., Shaw,J. and Woyke,T. (2012) Direct submission GenBank.