ISEfa13
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAAK03000022 | ND | Enterococcus faecium | Enterococcus faecium DO |
DNA section
IS Length : 1315 bp
Ends
IR Length : 24/32
IRL : GAGAGTGTAAAATATTTTGTGTAAATAGAAAAAAGGAAGTCCCTTCTGTA
IRR : GGTTGTGTCAATAATTATGTGTAAATGGAAAAGCCCATTCTGTTGATCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TACAAGAATATCGTTGAA | TATTCTGGAAACTT | 0 |
DNA sequence
GAGAGTGTAAAATATTTTGTGTAAATAGAAAAAAGGAAGTCCCTTCTGTAGAATAGAGTTACCACAACACATTCACAGAAAAGAGGACTTCCATATGAAC
GATTTTACTACAGAAATTATGGAAATACTAATCAATAAAGGTGATTTGGATGATTTGTTTCGTCGTCACCTAGAATTGGCTATTAACGCTTTATTACAAG
CTGAATTAACGGTATTTCTTGACTATGAAAAGTATGATAGAGCTGGATTTAATTCAGGTAATTCCCGTAATGGGAATTATTCGCGCTCTTTTAAAACAGA
GTACGGTGAATTGAATTTAGTAATACCTAGAGATAGGAATGGAGACTTTTCTCAACAAACTTTACCTGCTTATAAAAGAACCAATGACTCTTTAGAAACC
ACTATTATTCAGCTAGTTCAAAAAGGAATTACTATGTCCGAAATCTCTGATCTAATCGAAAAAATGTATGGTCATTATTACAAACCACAAACTATTTCAA
ATATGAGTAAAATTGTGTCTGAAGATGTTTCGGCATTTAAAGAAAGAACTTTAGAAGCTAAATACTCAGTCATTTTTATGGATGCTACTCATATTCCCTT
AAAAAGACAAACCGTATCAAAAGAAGCTGTCTATATAGTAATTGGTATCAGGTTGGATGGAACTAAAGAGGTTCTAGGATTTACTATAGCTCCAACTGAA
TCTGCTTATGTTTGGAAAGAGATTCTTCAAGATCTAAAAGACCGTGGTTTAGAAGAGGTTTTGTTAGTCGTAACAGATGGTTTAAGTGGTATTGACGATA
GTATTCATAGTGTTTATCCAAATGCTCAATTTCAACAATGTTGTGTCCATATATCTAGAAATATCGCTCATAAGGTTCGTGTTAGTGATCGACAAGAAAT
CTGTAGCGATTTCAAATTAGTTTACCAAGCAAGTTCAAAAGAAGAAGCAAATAATCAAATAAGGTTTATGATAGATAAATGGAAAAAGCAGTATCCACGA
GTGGTTAAATTGCTCATGAATCCTGCTATATTAACCTTTTATAATTTCCCTCCGTCAATCAGAAGAACTATTTATTCAACTAATTTGATTGAAGGTTTTA
ACAAACAATTAAAGAAATATACCAAAAGAAAAGAGCAATTTCCTAATGAAGAATCTCTGGAGAGATTTCTAGTATCTCAATTCAACAACTATAATCAAAA
GTTTCTATGCCGAGTTCATAAAGGTTTTAAAGAAATACATGATACATTAGAATCAATGTTTTAACTTGATCAACAGAATGGGCTTTTCCATTTACACATA
ATTATTGACACAACC
GATTTTACTACAGAAATTATGGAAATACTAATCAATAAAGGTGATTTGGATGATTTGTTTCGTCGTCACCTAGAATTGGCTATTAACGCTTTATTACAAG
CTGAATTAACGGTATTTCTTGACTATGAAAAGTATGATAGAGCTGGATTTAATTCAGGTAATTCCCGTAATGGGAATTATTCGCGCTCTTTTAAAACAGA
GTACGGTGAATTGAATTTAGTAATACCTAGAGATAGGAATGGAGACTTTTCTCAACAAACTTTACCTGCTTATAAAAGAACCAATGACTCTTTAGAAACC
ACTATTATTCAGCTAGTTCAAAAAGGAATTACTATGTCCGAAATCTCTGATCTAATCGAAAAAATGTATGGTCATTATTACAAACCACAAACTATTTCAA
ATATGAGTAAAATTGTGTCTGAAGATGTTTCGGCATTTAAAGAAAGAACTTTAGAAGCTAAATACTCAGTCATTTTTATGGATGCTACTCATATTCCCTT
AAAAAGACAAACCGTATCAAAAGAAGCTGTCTATATAGTAATTGGTATCAGGTTGGATGGAACTAAAGAGGTTCTAGGATTTACTATAGCTCCAACTGAA
TCTGCTTATGTTTGGAAAGAGATTCTTCAAGATCTAAAAGACCGTGGTTTAGAAGAGGTTTTGTTAGTCGTAACAGATGGTTTAAGTGGTATTGACGATA
GTATTCATAGTGTTTATCCAAATGCTCAATTTCAACAATGTTGTGTCCATATATCTAGAAATATCGCTCATAAGGTTCGTGTTAGTGATCGACAAGAAAT
CTGTAGCGATTTCAAATTAGTTTACCAAGCAAGTTCAAAAGAAGAAGCAAATAATCAAATAAGGTTTATGATAGATAAATGGAAAAAGCAGTATCCACGA
GTGGTTAAATTGCTCATGAATCCTGCTATATTAACCTTTTATAATTTCCCTCCGTCAATCAGAAGAACTATTTATTCAACTAATTTGATTGAAGGTTTTA
ACAAACAATTAAAGAAATATACCAAAAGAAAAGAGCAATTTCCTAATGAAGAATCTCTGGAGAGATTTCTAGTATCTCAATTCAACAACTATAATCAAAA
GTTTCTATGCCGAGTTCATAAAGGTTTTAAAGAAATACATGATACATTAGAATCAATGTTTTAACTTGATCAACAGAATGGGCTTTTCCATTTACACATA
ATTATTGACACAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1170 bp | 389 aa | 95 | 1264 | + | No |
Chemistry : DDE
ORF sequence :
MNDFTTEIMEILINKGDLDDLFRRHLELAINALLQAELTVFLDYEKYDRAGFNSGNSRNGNYSRSFKTEYGELNLVIPRDRNGDFSQQTLPAYKRTNDSL
ETTIIQLVQKGITMSEISDLIEKMYGHYYKPQTISNMSKIVSEDVSAFKERTLEAKYSVIFMDATHIPLKRQTVSKEAVYIVIGIRLDGTKEVLGFTIAP
TESAYVWKEILQDLKDRGLEEVLLVVTDGLSGIDDSIHSVYPNAQFQQCCVHISRNIAHKVRVSDRQEICSDFKLVYQASSKEEANNQIRFMIDKWKKQY
PRVVKLLMNPAILTFYNFPPSIRRTIYSTNLIEGFNKQLKKYTKRKEQFPNEESLERFLVSQFNNYNQKFLCRVHKGFKEIHDTLESMF
ETTIIQLVQKGITMSEISDLIEKMYGHYYKPQTISNMSKIVSEDVSAFKERTLEAKYSVIFMDATHIPLKRQTVSKEAVYIVIGIRLDGTKEVLGFTIAP
TESAYVWKEILQDLKDRGLEEVLLVVTDGLSGIDDSIHSVYPNAQFQQCCVHISRNIAHKVRVSDRQEICSDFKLVYQASSKEEANNQIRFMIDKWKKQY
PRVVKLLMNPAILTFYNFPPSIRRTIYSTNLIEGFNKQLKKYTKRKEQFPNEESLERFLVSQFNNYNQKFLCRVHKGFKEIHDTLESMF
Blast result :
Comments
ISEfa13 is 85% aa similar to ISEf1.
References
1] ISfinder annotation (2013)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission GenBank.