ISEfa13

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAAK03000022 ND Enterococcus faecium
Enterococcus faecium DO
DNA section
IS Length : 1315 bp

Ends


IR Length : 24/32

IRL : GAGAGTGTAAAATATTTTGTGTAAATAGAAAAAAGGAAGTCCCTTCTGTA
IRR : GGTTGTGTCAATAATTATGTGTAAATGGAAAAGCCCATTCTGTTGATCAA

Insertion site


Left flankDirect repeatRight flankDR Length
TACAAGAATATCGTTGAATATTCTGGAAACTT0

DNA sequence

GAGAGTGTAAAATATTTTGTGTAAATAGAAAAAAGGAAGTCCCTTCTGTAGAATAGAGTTACCACAACACATTCACAGAAAAGAGGACTTCCATATGAAC
GATTTTACTACAGAAATTATGGAAATACTAATCAATAAAGGTGATTTGGATGATTTGTTTCGTCGTCACCTAGAATTGGCTATTAACGCTTTATTACAAG
CTGAATTAACGGTATTTCTTGACTATGAAAAGTATGATAGAGCTGGATTTAATTCAGGTAATTCCCGTAATGGGAATTATTCGCGCTCTTTTAAAACAGA
GTACGGTGAATTGAATTTAGTAATACCTAGAGATAGGAATGGAGACTTTTCTCAACAAACTTTACCTGCTTATAAAAGAACCAATGACTCTTTAGAAACC
ACTATTATTCAGCTAGTTCAAAAAGGAATTACTATGTCCGAAATCTCTGATCTAATCGAAAAAATGTATGGTCATTATTACAAACCACAAACTATTTCAA
ATATGAGTAAAATTGTGTCTGAAGATGTTTCGGCATTTAAAGAAAGAACTTTAGAAGCTAAATACTCAGTCATTTTTATGGATGCTACTCATATTCCCTT
AAAAAGACAAACCGTATCAAAAGAAGCTGTCTATATAGTAATTGGTATCAGGTTGGATGGAACTAAAGAGGTTCTAGGATTTACTATAGCTCCAACTGAA
TCTGCTTATGTTTGGAAAGAGATTCTTCAAGATCTAAAAGACCGTGGTTTAGAAGAGGTTTTGTTAGTCGTAACAGATGGTTTAAGTGGTATTGACGATA
GTATTCATAGTGTTTATCCAAATGCTCAATTTCAACAATGTTGTGTCCATATATCTAGAAATATCGCTCATAAGGTTCGTGTTAGTGATCGACAAGAAAT
CTGTAGCGATTTCAAATTAGTTTACCAAGCAAGTTCAAAAGAAGAAGCAAATAATCAAATAAGGTTTATGATAGATAAATGGAAAAAGCAGTATCCACGA
GTGGTTAAATTGCTCATGAATCCTGCTATATTAACCTTTTATAATTTCCCTCCGTCAATCAGAAGAACTATTTATTCAACTAATTTGATTGAAGGTTTTA
ACAAACAATTAAAGAAATATACCAAAAGAAAAGAGCAATTTCCTAATGAAGAATCTCTGGAGAGATTTCTAGTATCTCAATTCAACAACTATAATCAAAA
GTTTCTATGCCGAGTTCATAAAGGTTTTAAAGAAATACATGATACATTAGAATCAATGTTTTAACTTGATCAACAGAATGGGCTTTTCCATTTACACATA
ATTATTGACACAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1170 bp389 aa951264+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNDFTTEIMEILINKGDLDDLFRRHLELAINALLQAELTVFLDYEKYDRAGFNSGNSRNGNYSRSFKTEYGELNLVIPRDRNGDFSQQTLPAYKRTNDSL
ETTIIQLVQKGITMSEISDLIEKMYGHYYKPQTISNMSKIVSEDVSAFKERTLEAKYSVIFMDATHIPLKRQTVSKEAVYIVIGIRLDGTKEVLGFTIAP
TESAYVWKEILQDLKDRGLEEVLLVVTDGLSGIDDSIHSVYPNAQFQQCCVHISRNIAHKVRVSDRQEICSDFKLVYQASSKEEANNQIRFMIDKWKKQY
PRVVKLLMNPAILTFYNFPPSIRRTIYSTNLIEGFNKQLKKYTKRKEQFPNEESLERFLVSQFNNYNQKFLCRVHKGFKEIHDTLESMF

 

Blast result :
Comments
ISEfa13 is 85% aa similar to ISEf1.
References
1] ISfinder annotation (2013)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission GenBank.