ISLde1
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP000412 | ND | Lactobacillus delbrueckii | Lactobacillus helveticus DPC 4571 Lactobacillus helveticus R0052 Lactobacillus helveticus H10 Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519 |
DNA section
IS Length : 1599 bp
Ends
IR Length : 21/29
IRL : CTAAGTGTATAATTTTTTTGCGGTAAGCTGAATAAAGGATTAAAAAAGCT
IRR : GTAAGTGTCAATGTTTTTGTGGTAACCTAAAAACCATTAGTCTGACCTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAAGACAGA | TTTTGTATCT | 0 | |
CTAGAATGTG | CATGAATGA | CATGCATTTT | 9 |
DNA sequence
CTAAGTGTATAATTTTTTTGCGGTAAGCTGAATAAAGGATTAAAAAAGCTCAAGTCCGTTGAATTTGGACTTGAGCTAAAACAAAAAGACCAGTAGTCTG
ATGTTAACCCAAAAAACACATTAGAAGCTGGTCTTTTATGGAATCTATTATAACTGATATCGTGAAAATTATTAAGTCTGAAAATAATGTTCTTGCCCGT
GAAAAGGCATTAATGTGCTATTTCTTTGATCTGATTGGAGAGTTGATGAAGCTGGCACTAGAGGAAGTTGATGTTGGTTTAGTTGATGAAACTAAAAAGC
AAGGCTATCAGATTGAAAAGAAAAATAAGCGTTCAGTGGTGACAGTTTTTGGCGAAATCAGTTACTGGCGCAGAAGATATGCTTGTCCAGGCAAGAAGGC
CCGATACCCACTGGATAAGCTGATGGGCTATGACAAATACAAGCGTTACAGTGTTTTGACAGTAAAAGATGTTTTGCAATTTAGTGCTGTGGCAACTTAC
CGCAATACTGCCTTAGCTGTTAATACCCTGTCTAACTTTAACATTAGTCATAGTCAAGTTGGTAAGCTGATTGTTCAAGCGGGCAAGCAAATCAAGGCAC
AGCAACAGTCTGAAGAAAGGTACGATGGCATTACCCAAAAGAAAAAAGTACCAGTGCTTTATCTTGAAGGCGATGGCGTTGTAATTAAAGGGACCAAAAA
GCGGCTGGAGTTTCACCGCTATCAAGTCTGTGAAGATATTATTAATGTGAGCAAGACGCGCAGAAAGAGAGTTCAAGCCAAAGAGTTCGTTTCTTTAAGC
CGCTTGAATGCCTTGCAAGAAATCAAAGCTTATTTAGCTAATACCTATGACTTAAGCGATACTTTGATCATCAGTAATGCCGATGGCGGCGCTGGCTATG
CCAAAAAAGATTTTGATGAAATAGTCGGTCGCTGCAAGCAGCACGAACACTTCTTGGATGTCTTTCATTTGAATAAAAAGATTAAAGATCGTCTGGGCTT
TATGCCGGCTATGCAAGGCAAATTAATTAGTGCAGTTGAGTTTAAGTACGACCGTCGCTTGACTGATGTGATTTTAGATACAATTGAAAGCAATCTGATT
GACGAACTGTATACGCCAAAAAATCATGAAAACCTAAGGCGTCTGCGCGGCTATCTTCATCGGCACTGGGCTGATATTGAGCCGTTTAAGATGCGCAATT
TGCCAGTAATTAAAGCAATAGGCTGCTGCGAAAGCAATCACCGCAAGTATACCTATCGGGTTAAAGGACAAGGAAAATACTGGTCAGAGGATGGCGCCGA
AGGGATTCTGCGTGTGCTGACTTGCATCAAAAACAATGAACTGGAATATTGGCTAAGCAGCGAGTTTGCAGGCTCGGAAATAAATGCAATAACTGAGCAA
GAATTAAAAGCGGCAGCCCGTGATAGCCTAAAGAAGCGACATGAAAGTCATTTAGGCATACAGCGCGGAGCTTTAACAACGCAAACGGCTGGAAGCAGCT
ATTTAAGCAAATTCAATCGGATGCTAAACCACATAAATTATTAAGAAATTAAGGTCAGACTAATGGTTTTTAGGTTACCACAAAAACATTGACACTTAC
ATGTTAACCCAAAAAACACATTAGAAGCTGGTCTTTTATGGAATCTATTATAACTGATATCGTGAAAATTATTAAGTCTGAAAATAATGTTCTTGCCCGT
GAAAAGGCATTAATGTGCTATTTCTTTGATCTGATTGGAGAGTTGATGAAGCTGGCACTAGAGGAAGTTGATGTTGGTTTAGTTGATGAAACTAAAAAGC
AAGGCTATCAGATTGAAAAGAAAAATAAGCGTTCAGTGGTGACAGTTTTTGGCGAAATCAGTTACTGGCGCAGAAGATATGCTTGTCCAGGCAAGAAGGC
CCGATACCCACTGGATAAGCTGATGGGCTATGACAAATACAAGCGTTACAGTGTTTTGACAGTAAAAGATGTTTTGCAATTTAGTGCTGTGGCAACTTAC
CGCAATACTGCCTTAGCTGTTAATACCCTGTCTAACTTTAACATTAGTCATAGTCAAGTTGGTAAGCTGATTGTTCAAGCGGGCAAGCAAATCAAGGCAC
AGCAACAGTCTGAAGAAAGGTACGATGGCATTACCCAAAAGAAAAAAGTACCAGTGCTTTATCTTGAAGGCGATGGCGTTGTAATTAAAGGGACCAAAAA
GCGGCTGGAGTTTCACCGCTATCAAGTCTGTGAAGATATTATTAATGTGAGCAAGACGCGCAGAAAGAGAGTTCAAGCCAAAGAGTTCGTTTCTTTAAGC
CGCTTGAATGCCTTGCAAGAAATCAAAGCTTATTTAGCTAATACCTATGACTTAAGCGATACTTTGATCATCAGTAATGCCGATGGCGGCGCTGGCTATG
CCAAAAAAGATTTTGATGAAATAGTCGGTCGCTGCAAGCAGCACGAACACTTCTTGGATGTCTTTCATTTGAATAAAAAGATTAAAGATCGTCTGGGCTT
TATGCCGGCTATGCAAGGCAAATTAATTAGTGCAGTTGAGTTTAAGTACGACCGTCGCTTGACTGATGTGATTTTAGATACAATTGAAAGCAATCTGATT
GACGAACTGTATACGCCAAAAAATCATGAAAACCTAAGGCGTCTGCGCGGCTATCTTCATCGGCACTGGGCTGATATTGAGCCGTTTAAGATGCGCAATT
TGCCAGTAATTAAAGCAATAGGCTGCTGCGAAAGCAATCACCGCAAGTATACCTATCGGGTTAAAGGACAAGGAAAATACTGGTCAGAGGATGGCGCCGA
AGGGATTCTGCGTGTGCTGACTTGCATCAAAAACAATGAACTGGAATATTGGCTAAGCAGCGAGTTTGCAGGCTCGGAAATAAATGCAATAACTGAGCAA
GAATTAAAAGCGGCAGCCCGTGATAGCCTAAAGAAGCGACATGAAAGTCATTTAGGCATACAGCGCGGAGCTTTAACAACGCAAACGGCTGGAAGCAGCT
ATTTAAGCAAATTCAATCGGATGCTAAACCACATAAATTATTAAGAAATTAAGGTCAGACTAATGGTTTTTAGGTTACCACAAAAACATTGACACTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1407 bp | 468 aa | 138 | 1544 | + | No |
Chemistry : DDE
ORF sequence :
MESIITDIVKIIKSENNVLAREKALMCYFFDLIGELMKLALEEVDVGLVDETKKQGYQIEKKNKRSVVTVFGEISYWRRRYACPGKKARYPLDKLMGYDK
YKRYSVLTVKDVLQFSAVATYRNTALAVNTLSNFNISHSQVGKLIVQAGKQIKAQQQSEERYDGITQKKKVPVLYLEGDGVVIKGTKKRLEFHRYQVCED
IINVSKTRRKRVQAKEFVSLSRLNALQEIKAYLANTYDLSDTLIISNADGGAGYAKKDFDEIVGRCKQHEHFLDVFHLNKKIKDRLGFMPAMQGKLISAV
EFKYDRRLTDVILDTIESNLIDELYTPKNHENLRRLRGYLHRHWADIEPFKMRNLPVIKAIGCCESNHRKYTYRVKGQGKYWSEDGAEGILRVLTCIKNN
ELEYWLSSEFAGSEINAITEQELKAAARDSLKKRHESHLGIQRGALTTQTAGSSYLSKFNRMLNHINY
YKRYSVLTVKDVLQFSAVATYRNTALAVNTLSNFNISHSQVGKLIVQAGKQIKAQQQSEERYDGITQKKKVPVLYLEGDGVVIKGTKKRLEFHRYQVCED
IINVSKTRRKRVQAKEFVSLSRLNALQEIKAYLANTYDLSDTLIISNADGGAGYAKKDFDEIVGRCKQHEHFLDVFHLNKKIKDRLGFMPAMQGKLISAV
EFKYDRRLTDVILDTIESNLIDELYTPKNHENLRRLRGYLHRHWADIEPFKMRNLPVIKAIGCCESNHRKYTYRVKGQGKYWSEDGAEGILRVLTCIKNN
ELEYWLSSEFAGSEINAITEQELKAAARDSLKKRHESHLGIQRGALTTQTAGSSYLSKFNRMLNHINY
Blast result :
Comments
ISLde1 is 91% aa similar to ISLhe10.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References