ISSin1
- Family IS256
- Group IS1249
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_GG770226 | ND | Scardovia inopinata | Scardovia wiggsiae F0424 Scardovia inopinata F0304 |
DNA section
IS Length : 1339 bp
Ends
IR Length : 25/27
IRL : GGGCGTATAGGCATGGGTGTGTTGCTGTTTTAGTTTTTATTCCTTGTGTT
IRR : GGCTTATAGGCATGGGTGTGTTGCTGGCTGGTTAGTAGGTTTCGTGCCAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTACGCATTC | AAAAACGCGG | 0 | |
| GGACCAAATT | GCGATACAGC | 0 |
DNA sequence
GGGCGTATAGGCATGGGTGTGTTGCTGTTTTAGTTTTTATTCCTTGTGTTTATTGGGGTTGACTGTGTTTTAAATTTCTTGTTCTTTTTTACGTATAGGC
ATGAGAGTGTTGCTAGAAACACGTGTACCCCTCGCGATTGCGCGGGGTGTAACCCTGTTTAAAAACCATGCATGCTAGGTGGTATGAAAACCATAGTCTG
TGTTACTTGCCAGAGTACGAATATTAAAAAGAACGGGACAACCAGTAGCGGTAAACAACGCTATTACTGCAAAAACTGTAAAACGAGTTTCACACACGAG
TATGATTCAACATTCAAAGATTTTGCCTTATTCCTGGACTATGTCACCCACACGCATAGCCAAAACGACTACACGATAGCAGGAAGAACTCTCAGAGAAA
AAACACGCCGTTTCTGGCAGTATTGGCCGCTGCCACCCTTAGTCAATGAATCCTACGATATTGTATTCATTGACGGTATTGACATCACTCGTAAAATCGT
GGTATTAATCGCGTGCACGACCACGCATATTATTGGCTGGTACGTGGCTAGAAGCGAGACCACAGCCGCATACACAGCACTCCTATCACGGATAGCAGCT
CCCACGATAGCCGTTTCTGATGGAGGAAGTGGTTTTAGAAAAGCCTGTAAAAACACGTGGCCTAACACGAAAATTCAACGCTGCCTGTTCCACATATACA
TGACCATACGCACAGCAACAACTCTGCACCCGCGTCTACTACCCGGTAAACAACTCCTTCGTATAGGAACAAGCCTATTGAAAGTAAAAACTCTTGACCA
TGCACGGCAATGGGTACACATGTATGCCCTATGGTATGAGACATGGCATGACTGGCTCGATGAGAAAACTCTCATCGATACCCGCTGGCAAGACACGCAC
GCGTGTCTTGCCAAAGCAGCCAGGAGCATCAACACGCTCATTCAACAAAACCAGTTATTCACCAACCTGCATGACAAGTATTACTACACGTATAAGAATC
ACGTCATCGTAACAAATAACCAGATAGAAGGCGGTGTCAACACCCAGTTAAGAGCCCTGCTAGGCGCGCATAGAGGAATGAAACTTGACCGGCAAATCAA
AACAATTTTCTGGTACTGTTACACACATTCCACAGCAACCCAAAACCCTAAAGAATACTTACCCACCATGCCCACAGACACCGACATCACGCAGCTTTAC
CGGCACATCAACGAATACCAACAATGGAAAGCAACCATCCCGGGATGGGGAGACGCACTAGCCTACACAGAATTCCATCACGGCACACCCTGGCACGAAA
CCTACTAACCAGCCAGCAACACACCCATGCCTATAAGCC
ATGAGAGTGTTGCTAGAAACACGTGTACCCCTCGCGATTGCGCGGGGTGTAACCCTGTTTAAAAACCATGCATGCTAGGTGGTATGAAAACCATAGTCTG
TGTTACTTGCCAGAGTACGAATATTAAAAAGAACGGGACAACCAGTAGCGGTAAACAACGCTATTACTGCAAAAACTGTAAAACGAGTTTCACACACGAG
TATGATTCAACATTCAAAGATTTTGCCTTATTCCTGGACTATGTCACCCACACGCATAGCCAAAACGACTACACGATAGCAGGAAGAACTCTCAGAGAAA
AAACACGCCGTTTCTGGCAGTATTGGCCGCTGCCACCCTTAGTCAATGAATCCTACGATATTGTATTCATTGACGGTATTGACATCACTCGTAAAATCGT
GGTATTAATCGCGTGCACGACCACGCATATTATTGGCTGGTACGTGGCTAGAAGCGAGACCACAGCCGCATACACAGCACTCCTATCACGGATAGCAGCT
CCCACGATAGCCGTTTCTGATGGAGGAAGTGGTTTTAGAAAAGCCTGTAAAAACACGTGGCCTAACACGAAAATTCAACGCTGCCTGTTCCACATATACA
TGACCATACGCACAGCAACAACTCTGCACCCGCGTCTACTACCCGGTAAACAACTCCTTCGTATAGGAACAAGCCTATTGAAAGTAAAAACTCTTGACCA
TGCACGGCAATGGGTACACATGTATGCCCTATGGTATGAGACATGGCATGACTGGCTCGATGAGAAAACTCTCATCGATACCCGCTGGCAAGACACGCAC
GCGTGTCTTGCCAAAGCAGCCAGGAGCATCAACACGCTCATTCAACAAAACCAGTTATTCACCAACCTGCATGACAAGTATTACTACACGTATAAGAATC
ACGTCATCGTAACAAATAACCAGATAGAAGGCGGTGTCAACACCCAGTTAAGAGCCCTGCTAGGCGCGCATAGAGGAATGAAACTTGACCGGCAAATCAA
AACAATTTTCTGGTACTGTTACACACATTCCACAGCAACCCAAAACCCTAAAGAATACTTACCCACCATGCCCACAGACACCGACATCACGCAGCTTTAC
CGGCACATCAACGAATACCAACAATGGAAAGCAACCATCCCGGGATGGGGAGACGCACTAGCCTACACAGAATTCCATCACGGCACACCCTGGCACGAAA
CCTACTAACCAGCCAGCAACACACCCATGCCTATAAGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1125 bp | 374 aa | 184 | 1308 | + | No |
Chemistry : DDE
ORF sequence :
MKTIVCVTCQSTNIKKNGTTSSGKQRYYCKNCKTSFTHEYDSTFKDFALFLDYVTHTHSQNDYTIAGRTLREKTRRFWQYWPLPPLVNESYDIVFIDGID
ITRKIVVLIACTTTHIIGWYVARSETTAAYTALLSRIAAPTIAVSDGGSGFRKACKNTWPNTKIQRCLFHIYMTIRTATTLHPRLLPGKQLLRIGTSLLK
VKTLDHARQWVHMYALWYETWHDWLDEKTLIDTRWQDTHACLAKAARSINTLIQQNQLFTNLHDKYYYTYKNHVIVTNNQIEGGVNTQLRALLGAHRGMK
LDRQIKTIFWYCYTHSTATQNPKEYLPTMPTDTDITQLYRHINEYQQWKATIPGWGDALAYTEFHHGTPWHETY
ITRKIVVLIACTTTHIIGWYVARSETTAAYTALLSRIAAPTIAVSDGGSGFRKACKNTWPNTKIQRCLFHIYMTIRTATTLHPRLLPGKQLLRIGTSLLK
VKTLDHARQWVHMYALWYETWHDWLDEKTLIDTRWQDTHACLAKAARSINTLIQQNQLFTNLHDKYYYTYKNHVIVTNNQIEGGVNTQLRALLGAHRGMK
LDRQIKTIFWYCYTHSTATQNPKEYLPTMPTDTDITQLYRHINEYQQWKATIPGWGDALAYTEFHHGTPWHETY
Blast result :
Comments
ISSin1 is 60% aa similar to ISAod1.
References
1] ISfinder annotation (2013)
2] Ward,D., Earl,A., Feldgarden,M., Gevers,D., Young,S., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A.M., Borenstein,D., Chapman,S.B., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D.I., Hepburn,T.A., Howarth,C., Jen,D., Larson,L., Mehta,T., Park,D., Pearson,M., Richards,J., Roberts,A., Saif,S., Shea,T.D., Shenoy,N., Sisk,P., Stolte,C., Sykes,S.N., Walk,T., White,J., Yandava,C., Izard,J., Baranova,O.V., Blanton,J.M., Tanner,A.C., Dewhirst,F., Haas,B., Nusbaum,C. and Birren,B. (2010) Direct submission GenBank.
2] Ward,D., Earl,A., Feldgarden,M., Gevers,D., Young,S., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A.M., Borenstein,D., Chapman,S.B., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D.I., Hepburn,T.A., Howarth,C., Jen,D., Larson,L., Mehta,T., Park,D., Pearson,M., Richards,J., Roberts,A., Saif,S., Shea,T.D., Shenoy,N., Sisk,P., Stolte,C., Sykes,S.N., Walk,T., White,J., Yandava,C., Izard,J., Baranova,O.V., Blanton,J.M., Tanner,A.C., Dewhirst,F., Haas,B., Nusbaum,C. and Birren,B. (2010) Direct submission GenBank.