ISOrsp1
- Family IS256
- Group IS1249
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_JH414505 | ND | Oribacterium sp. | Oribacterium sp. ACB7 |
DNA section
IS Length : 1345 bp
Ends
IR Length : 24/26
IRL : GGCTTATAGGACAAAACGTGTTGATGAAAACCGCTCTACAGCTAGATAAA
IRR : GAGTTATAGGACAAAACGTGTTGATGGCTAATCCCAATCAATGAATGTTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTTTTTTTCA | GCAAAAAA | ACGAGGCGGT | 8 |
DNA sequence
GGCTTATAGGACAAAACGTGTTGATGAAAACCGCTCTACAGCTAGATAAATAAAGGCTGTAGGGCGGTTCAATCTTTTTCAAAACAACTTTAAGGGTGGA
CAAAACGTGTTGATAAAAATGCTGTAAGTCCTTGTACAGCAACGAGTTATGAGGGTTTAATCTTCCTTGAAACCATACTCCTTGGAGGAAGATGAAATGA
ATCAAATAAATTGCCCTATTTGCGGAAAGAAATGTGTTAAATCAGGAAAGACCAATGCCGGCTCTCAAAGGTGGTTATGCAAAGCATGTAAGAGTTCTTT
CACGCATAAGATTGATAATAACTCAAAGGAATTGAAGAGCTTTTTAGAGTGGCTATTCGGCAAAGAGGCACAATCCACCATGCCTGGAGAAGGAAGGAGT
TTCAGAAGAAAAACTGCTAAATTTTGGGATATATGGACAATGCCTCCTAAGATAGAAATCTCCGGGGATGTCTTATTTTTAGATGGTATATATCTTGGGC
GAAAGGCATGTATACTCATTTGCTGTGATGAAAAAAATGTGCTTGGATGGTACCTCTGCAGATATGAACATGCAGGTGCATGGATCGCTCTTATGAAGCG
TATAGCAGAACCAAGAATGGTTGTTTCAGACGGGGGAACCGGCTTTGGAAAAGCACTAAAGCAAATATGGCCTAATGCCAAGCATCAAAGGTGTATATTC
CACGTGTTCTGTCAGATAAAGCGTTATACAACTTCAAGGCCAAATACTATGGCGGGTATAGAACTTTATTCTTTGGCTAAAGATCTCTTAAAAATAGAAA
ACAAAAACGAAGGTGGAAACTGGATGAAACGCTTTGTGGACTGGATTAAGAAATACCAGGAATTCCTTAGTGCAATGACTATAGATGAGTATGGGAATAA
AAGACCAACACATGAAAGACTACTAAAAGCAGAAAGGTCCTTACTAAGACTCATTCGAGAGAATACTCTATTTACATATCTTGATGATGAATTCACTACT
AGCTTTTCTACGCCATCAACGAATAATAGAATAGAGGGTGGCATTAATTCGCGTCTTAGGGAAATGCTAAGGAATCATAGAGGGTTATCGATAGAAAGAA
GAATAAAAGCGGTCTTCTGGTGGTGTTATATGCACTCTCCAGAGCCGCTTTCTTCGTCTGAAATATTAAAGATAATGCCAACTGATAAAAGCATTGTAAG
GCTTTATAAAAAGATGAATGAGAAACAGAGGTTAGAAAAAAGCCTTTCCATTTGGGGTGATGCTATTGTGTGGAGCGATCTCCATAACGAGAATAAAACA
TTCATTGATTGGGATTAGCCATCAACACGTTTTGTCCTATAACTC
CAAAACGTGTTGATAAAAATGCTGTAAGTCCTTGTACAGCAACGAGTTATGAGGGTTTAATCTTCCTTGAAACCATACTCCTTGGAGGAAGATGAAATGA
ATCAAATAAATTGCCCTATTTGCGGAAAGAAATGTGTTAAATCAGGAAAGACCAATGCCGGCTCTCAAAGGTGGTTATGCAAAGCATGTAAGAGTTCTTT
CACGCATAAGATTGATAATAACTCAAAGGAATTGAAGAGCTTTTTAGAGTGGCTATTCGGCAAAGAGGCACAATCCACCATGCCTGGAGAAGGAAGGAGT
TTCAGAAGAAAAACTGCTAAATTTTGGGATATATGGACAATGCCTCCTAAGATAGAAATCTCCGGGGATGTCTTATTTTTAGATGGTATATATCTTGGGC
GAAAGGCATGTATACTCATTTGCTGTGATGAAAAAAATGTGCTTGGATGGTACCTCTGCAGATATGAACATGCAGGTGCATGGATCGCTCTTATGAAGCG
TATAGCAGAACCAAGAATGGTTGTTTCAGACGGGGGAACCGGCTTTGGAAAAGCACTAAAGCAAATATGGCCTAATGCCAAGCATCAAAGGTGTATATTC
CACGTGTTCTGTCAGATAAAGCGTTATACAACTTCAAGGCCAAATACTATGGCGGGTATAGAACTTTATTCTTTGGCTAAAGATCTCTTAAAAATAGAAA
ACAAAAACGAAGGTGGAAACTGGATGAAACGCTTTGTGGACTGGATTAAGAAATACCAGGAATTCCTTAGTGCAATGACTATAGATGAGTATGGGAATAA
AAGACCAACACATGAAAGACTACTAAAAGCAGAAAGGTCCTTACTAAGACTCATTCGAGAGAATACTCTATTTACATATCTTGATGATGAATTCACTACT
AGCTTTTCTACGCCATCAACGAATAATAGAATAGAGGGTGGCATTAATTCGCGTCTTAGGGAAATGCTAAGGAATCATAGAGGGTTATCGATAGAAAGAA
GAATAAAAGCGGTCTTCTGGTGGTGTTATATGCACTCTCCAGAGCCGCTTTCTTCGTCTGAAATATTAAAGATAATGCCAACTGATAAAAGCATTGTAAG
GCTTTATAAAAAGATGAATGAGAAACAGAGGTTAGAAAAAAGCCTTTCCATTTGGGGTGATGCTATTGTGTGGAGCGATCTCCATAACGAGAATAAAACA
TTCATTGATTGGGATTAGCCATCAACACGTTTTGTCCTATAACTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1122 bp | 373 aa | 197 | 1318 | + | No |
Chemistry : DDE
ORF sequence :
MNQINCPICGKKCVKSGKTNAGSQRWLCKACKSSFTHKIDNNSKELKSFLEWLFGKEAQSTMPGEGRSFRRKTAKFWDIWTMPPKIEISGDVLFLDGIYL
GRKACILICCDEKNVLGWYLCRYEHAGAWIALMKRIAEPRMVVSDGGTGFGKALKQIWPNAKHQRCIFHVFCQIKRYTTSRPNTMAGIELYSLAKDLLKI
ENKNEGGNWMKRFVDWIKKYQEFLSAMTIDEYGNKRPTHERLLKAERSLLRLIRENTLFTYLDDEFTTSFSTPSTNNRIEGGINSRLREMLRNHRGLSIE
RRIKAVFWWCYMHSPEPLSSSEILKIMPTDKSIVRLYKKMNEKQRLEKSLSIWGDAIVWSDLHNENKTFIDWD
GRKACILICCDEKNVLGWYLCRYEHAGAWIALMKRIAEPRMVVSDGGTGFGKALKQIWPNAKHQRCIFHVFCQIKRYTTSRPNTMAGIELYSLAKDLLKI
ENKNEGGNWMKRFVDWIKKYQEFLSAMTIDEYGNKRPTHERLLKAERSLLRLIRENTLFTYLDDEFTTSFSTPSTNNRIEGGINSRLREMLRNHRGLSIE
RRIKAVFWWCYMHSPEPLSSSEILKIMPTDKSIVRLYKKMNEKQRLEKSLSIWGDAIVWSDLHNENKTFIDWD
Blast result :
Comments
ISOrsp1 is 75% aa similar to ISVat1.
References
1] ISfinder annotation (2013)
2] Earl,A., Ward,D., Feldgarden,M., Gevers,D., Sizova,M., Hazen,A., Epstein,S., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M. Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. (2011) Direct submission GenBank.
2] Earl,A., Ward,D., Feldgarden,M., Gevers,D., Sizova,M., Hazen,A., Epstein,S., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M. Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. (2011) Direct submission GenBank.