ISEle1
- Family IS256
- Group IS1249
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_013204 | ND | Eggerthella lenta | Eggerthella lenta DSM 2243 |
DNA section
IS Length : 1334 bp
Ends
IR Length : 25
IRL : GGGTTATAGGCAAGAAAGTGTGTCCGTTTTAGGGGTGTAAGGGCAGGTCA
IRR : GGGTTATAGGCAAGAAAGTGTGTCCAGAGCCTAATCGTAATCCATGCGAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GACCGGGTAC | GCACAGTG | TTATCTGAGA | 8 |
| CCGCGTAGCG | CGAGCTGC | AGGCATAAAA | 8 |
| TACATTCCCA | ACCATGTA | TTTTACAACC | 8 |
| GCCGACCTCG | GCATCCTG | CCAGCCTGAC | 8 |
| CCACTCCTCG | CCGAACGT | CGTGAAGATG | 8 |
| GATGGTTTCG | TATCCCTC | CCTTTCCTTT | 8 |
DNA sequence
GGGTTATAGGCAAGAAAGTGTGTCCGTTTTAGGGGTGTAAGGGCAGGTCAAACCCTCGATAAACCATCGTTTAAATTTCGGAGGCAGGTTTAAGTGCCTG
GCAAGAATGTGTGTCCGCTTTCGACTTGACACCGCAGGTCAGAGGCCGTAAACCGCCCTCTTAAATTCCGTGGTTCAATCACGGGATGAAGAAGATACTG
TGCCCTGCGTGCGGGGGCGACACGAAACGCAACGGGAAGACCTCGTCGGGGGCGACTCGTTGGCGCTGCAAGGCATGCGGCGCATCCACCACGCAACGTT
ACGACAACGAGCCTAAACTGCTAGAGCTGTTCCTGAGGTGGCTGCTCTCGAAAAAGACCCAAGGCGAGTTCGGCATGCCCGGACGCACCTTCCGGCATCT
CACGAATAAGTTCTGGGACCTGTGGCCCGTGGCTCCTGTCTGTGACGAGGTCCACCACGTGGTGGAGGTGGATGGCCTTTGGCTGGGGCGCGACGTCGTG
ATTATGATCGCCTGCACCGAGAAGCACGTGATCGGCTGGCATCTAGCGAGAAGCGAGAACGCGCAGGCGTGGGCGGCGCTCATGGCGCGCATAGCCCCTC
CCGACGTCGTGATTACCGATGGCGGAAAGGGGTTCGAGAAGGCGAGACGCGCCGTGTGGCCGAACACACGCGTGCAGCGCTGCGTCTTCCATGCGTTCTG
TCAGGTGAAGCGCCAGACCACGACCAGGCCGCGGCTCCAGGCGGGCGTTGAGCTCTATGGCATCGCCAAGAAGCTCATGCGCATAGGTAGCCTCAACGAA
GCTGCGGAGTGGCTTGCGGGCTTCTCTAATTGGTGCACGGCATGGGAAGGATTCCTAAAGGAAAAAGAGGTGGTTGACGGGCGGATCCGCTACAAGCACG
AGAGGCTGCGCACTGCGCGCGGCGGGCTTCTGAAGCTTTGTAGGGCCGGTACCCTATTCACCTATCTCGACGAAGGCTTGCTCGAGGGAGGACCTGTTCC
GGCGACTACGAACAGGATCGAAGGCGGCGTGAACGCCCAGATCCGCCACATGCTGCGAGAGCATCGGGGATTGAGGCTGACGAGGCGCGTCAAGGCGGCG
TTCTGGTGGTGCTATATGGACCTTGAAGCCCGTGCAAGCCCGAAAGAGATCCTGAAGGAAATGCCGACGGACGTCCTGATTGCTGAGTTTTATCGAGCAG
CTGCCGAAGCTAGCGAAAAAGATGAAGCGGTGGGGCGCTGGGGCACTGCTGTGCAATGGAATGACCTGCATGCAAGCGGCCCTTATCGCATGGATTACGA
TTAGGCTCTGGACACACTTTCTTGCCTATAACCC
GCAAGAATGTGTGTCCGCTTTCGACTTGACACCGCAGGTCAGAGGCCGTAAACCGCCCTCTTAAATTCCGTGGTTCAATCACGGGATGAAGAAGATACTG
TGCCCTGCGTGCGGGGGCGACACGAAACGCAACGGGAAGACCTCGTCGGGGGCGACTCGTTGGCGCTGCAAGGCATGCGGCGCATCCACCACGCAACGTT
ACGACAACGAGCCTAAACTGCTAGAGCTGTTCCTGAGGTGGCTGCTCTCGAAAAAGACCCAAGGCGAGTTCGGCATGCCCGGACGCACCTTCCGGCATCT
CACGAATAAGTTCTGGGACCTGTGGCCCGTGGCTCCTGTCTGTGACGAGGTCCACCACGTGGTGGAGGTGGATGGCCTTTGGCTGGGGCGCGACGTCGTG
ATTATGATCGCCTGCACCGAGAAGCACGTGATCGGCTGGCATCTAGCGAGAAGCGAGAACGCGCAGGCGTGGGCGGCGCTCATGGCGCGCATAGCCCCTC
CCGACGTCGTGATTACCGATGGCGGAAAGGGGTTCGAGAAGGCGAGACGCGCCGTGTGGCCGAACACACGCGTGCAGCGCTGCGTCTTCCATGCGTTCTG
TCAGGTGAAGCGCCAGACCACGACCAGGCCGCGGCTCCAGGCGGGCGTTGAGCTCTATGGCATCGCCAAGAAGCTCATGCGCATAGGTAGCCTCAACGAA
GCTGCGGAGTGGCTTGCGGGCTTCTCTAATTGGTGCACGGCATGGGAAGGATTCCTAAAGGAAAAAGAGGTGGTTGACGGGCGGATCCGCTACAAGCACG
AGAGGCTGCGCACTGCGCGCGGCGGGCTTCTGAAGCTTTGTAGGGCCGGTACCCTATTCACCTATCTCGACGAAGGCTTGCTCGAGGGAGGACCTGTTCC
GGCGACTACGAACAGGATCGAAGGCGGCGTGAACGCCCAGATCCGCCACATGCTGCGAGAGCATCGGGGATTGAGGCTGACGAGGCGCGTCAAGGCGGCG
TTCTGGTGGTGCTATATGGACCTTGAAGCCCGTGCAAGCCCGAAAGAGATCCTGAAGGAAATGCCGACGGACGTCCTGATTGCTGAGTTTTATCGAGCAG
CTGCCGAAGCTAGCGAAAAAGATGAAGCGGTGGGGCGCTGGGGCACTGCTGTGCAATGGAATGACCTGCATGCAAGCGGCCCTTATCGCATGGATTACGA
TTAGGCTCTGGACACACTTTCTTGCCTATAACCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1119 bp | 372 aa | 186 | 1304 | + | No |
Chemistry : DDE
ORF sequence :
MKKILCPACGGDTKRNGKTSSGATRWRCKACGASTTQRYDNEPKLLELFLRWLLSKKTQGEFGMPGRTFRHLTNKFWDLWPVAPVCDEVHHVVEVDGLWL
GRDVVIMIACTEKHVIGWHLARSENAQAWAALMARIAPPDVVITDGGKGFEKARRAVWPNTRVQRCVFHAFCQVKRQTTTRPRLQAGVELYGIAKKLMRI
GSLNEAAEWLAGFSNWCTAWEGFLKEKEVVDGRIRYKHERLRTARGGLLKLCRAGTLFTYLDEGLLEGGPVPATTNRIEGGVNAQIRHMLREHRGLRLTR
RVKAAFWWCYMDLEARASPKEILKEMPTDVLIAEFYRAAAEASEKDEAVGRWGTAVQWNDLHASGPYRMDYD
GRDVVIMIACTEKHVIGWHLARSENAQAWAALMARIAPPDVVITDGGKGFEKARRAVWPNTRVQRCVFHAFCQVKRQTTTRPRLQAGVELYGIAKKLMRI
GSLNEAAEWLAGFSNWCTAWEGFLKEKEVVDGRIRYKHERLRTARGGLLKLCRAGTLFTYLDEGLLEGGPVPATTNRIEGGVNAQIRHMLREHRGLRLTR
RVKAAFWWCYMDLEARASPKEILKEMPTDVLIAEFYRAAAEASEKDEAVGRWGTAVQWNDLHASGPYRMDYD
Blast result :
Comments
ISEle1 is 55% aa similar to ISGva1.
References
1] ISfinder annotation (2013)
2] Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T., Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L., Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C. 2009) Direct submission GenBank.
2] Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T., Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L., Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C. 2009) Direct submission GenBank.