ISSlgl1
- Family IS256
- Group IS1249
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_013165 | ND | Slackia heliotrinireducens | Slackia heliotrinireducens DSM 20476 |
DNA section
IS Length : 1341 bp
Ends
IR Length : 25/26
IRL : GGGTTATAGGCCAAAACGTGTTGATGATTTCACGTATCATCCCAGTTCAC
IRR : TGGTTATAGGCCAAAACGTGTTGATGGATGATCAATCCCAATCGATGCGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCGGAACGAC | TCCATTCC | CGCCTTCCAT | 8 |
DNA sequence
GGGTTATAGGCCAAAACGTGTTGATGATTTCACGTATCATCCCAGTTCACATACCCTAAAATGAACCCGAAAGTTCATGGCCCCCAACTTTACAGTCGGC
CAAAACGTGTTGATGGTTTAGAGGGTAAGCCCAGTTCAAACCGCGTAAAAACGCCCTGAAAGTTCCCTATGCTTCAATTCTGGGCATGAATAATGTCAAA
TGCCCCGTGTGCGGGGGCAAGATGGTACGGAACGGCAGGACTGCTGCGGGGACGCAGCGATGGCTTTGCAAGTCCTGCAGGGCGACCGCGACGCACAGGA
TCGACAACGACGCAAAGCTGCTCAAGACCTTCCTGGGCTGGCTGTTCTCATCCAGGACCCAGGACGAGACGAGGTGGAGCGCCCGCACGTTCAGGCGCAA
GTGCGCGAAGCTCTGGGAAGTCTGGCCGATACCCCAGCAGACCGGCGAGGTGCACCGCGCGGTGTTCGTCGACGGCCTGCACATCGCGAAGGGCGTCCAC
GTCCTCATCGCCAGCACCGAGGAGCACGTCATCGGCTGGTACCTGGCGAGATCCGAGAACTCCAGGGCGTGGGCCGCGCTCATGTCGCCGATCCCGCCAC
CGGACGGCGTCGTGACCGACGGCGGCAGCGGGTTCGGGAAGGCCCGCAAGAAGGTATGGCCCGAAACCAGGGTGCAGCGATGCGTGTTCCACGCCTTCAG
CCAGGTCAAGAAGCAGACCACGACGAGGCCGAAGCTGCAGGCCGGCGTCGAGCTCTACGGGCTTGCGAAGGAGCTGCTGCACGCCAAGACGCCCTCGGCG
GCGACCGCGTGGCTGCAGGCGTCCAACGACTGGTGCGAGCGCTGGGAGGACTTCCTGGCGGAGAGGACCCCGAACGAGGAGACGGGCAAGCGGGATTGGA
CGCACGAGCGCCTCGTCACCGCCAGGAACGGCCTGAACGCGCTGATCAGGCGCGGCCGCCTCTTCACGTTCCTCGACCCGGAGTTGACTGCGGAGGGCCC
CGTGCCGAGCACCAACAACAGGCACGAGGGAGGCGTCAACGCCCCTCTGCGCGACATGCTGAGGCTGCACCGCGGCATGAGCACCCTGCGCCGCGTCAAG
GCGGTGTTCTGGTGGTGCTGCATGCACTCGGATAACCCCCTCCCGGCGGCGGAGATTCTGGCCGCGATGCCGACCGACGAGGACATTGCCGCCCTCTGCA
GGAGGATTGTTTACGAGCCGCAGAAGCGGGACGGCCCGGTTGAGTGGGGCGACGGACTGGTGTGGGCCGAATTACACCACTCGACGCCTTGGCGCATCGA
TTGGGATTGATCATCCATCAACACGTTTTGGCCTATAACCA
CAAAACGTGTTGATGGTTTAGAGGGTAAGCCCAGTTCAAACCGCGTAAAAACGCCCTGAAAGTTCCCTATGCTTCAATTCTGGGCATGAATAATGTCAAA
TGCCCCGTGTGCGGGGGCAAGATGGTACGGAACGGCAGGACTGCTGCGGGGACGCAGCGATGGCTTTGCAAGTCCTGCAGGGCGACCGCGACGCACAGGA
TCGACAACGACGCAAAGCTGCTCAAGACCTTCCTGGGCTGGCTGTTCTCATCCAGGACCCAGGACGAGACGAGGTGGAGCGCCCGCACGTTCAGGCGCAA
GTGCGCGAAGCTCTGGGAAGTCTGGCCGATACCCCAGCAGACCGGCGAGGTGCACCGCGCGGTGTTCGTCGACGGCCTGCACATCGCGAAGGGCGTCCAC
GTCCTCATCGCCAGCACCGAGGAGCACGTCATCGGCTGGTACCTGGCGAGATCCGAGAACTCCAGGGCGTGGGCCGCGCTCATGTCGCCGATCCCGCCAC
CGGACGGCGTCGTGACCGACGGCGGCAGCGGGTTCGGGAAGGCCCGCAAGAAGGTATGGCCCGAAACCAGGGTGCAGCGATGCGTGTTCCACGCCTTCAG
CCAGGTCAAGAAGCAGACCACGACGAGGCCGAAGCTGCAGGCCGGCGTCGAGCTCTACGGGCTTGCGAAGGAGCTGCTGCACGCCAAGACGCCCTCGGCG
GCGACCGCGTGGCTGCAGGCGTCCAACGACTGGTGCGAGCGCTGGGAGGACTTCCTGGCGGAGAGGACCCCGAACGAGGAGACGGGCAAGCGGGATTGGA
CGCACGAGCGCCTCGTCACCGCCAGGAACGGCCTGAACGCGCTGATCAGGCGCGGCCGCCTCTTCACGTTCCTCGACCCGGAGTTGACTGCGGAGGGCCC
CGTGCCGAGCACCAACAACAGGCACGAGGGAGGCGTCAACGCCCCTCTGCGCGACATGCTGAGGCTGCACCGCGGCATGAGCACCCTGCGCCGCGTCAAG
GCGGTGTTCTGGTGGTGCTGCATGCACTCGGATAACCCCCTCCCGGCGGCGGAGATTCTGGCCGCGATGCCGACCGACGAGGACATTGCCGCCCTCTGCA
GGAGGATTGTTTACGAGCCGCAGAAGCGGGACGGCCCGGTTGAGTGGGGCGACGGACTGGTGTGGGCCGAATTACACCACTCGACGCCTTGGCGCATCGA
TTGGGATTGATCATCCATCAACACGTTTTGGCCTATAACCA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1130 bp | 374 aa | 181 | 1310 | + | No |
Chemistry : DDE
ORF sequence :
MNNVKCPVCGGKMVRNGRTAAGTQRWLCKSCRATATHRIDNDAKLLKTFLGWLFSSRTQDETRWSARTFRRKCAKLWEVWPIPQQTGEVHRAVFVDGLHI
AKGVHVLIASTEEHVIGWYLARSENSRAWAALMSPIPPPDGVVTDGGSGFGKARKKVWPETRVQRCVFHAFSQVKKQTTTRPKLQAGVELYGLAKELLHA
KTPSAATAWLQASNDWCERWEDFLAERTPNEETGKRDWTHERLVTARNGLNALIRRGRLFTFLDPELTAEGPVPSTNNRHEGGVNAPLRDMLRLHRGMST
LRRVKAVFWWCCMHSDNPLPAAEILAAMPTDEDIAALCRRIVYEPQKRDGPVEWGDGLVWAELHHSTPWRIDWD
AKGVHVLIASTEEHVIGWYLARSENSRAWAALMSPIPPPDGVVTDGGSGFGKARKKVWPETRVQRCVFHAFSQVKKQTTTRPKLQAGVELYGLAKELLHA
KTPSAATAWLQASNDWCERWEDFLAERTPNEETGKRDWTHERLVTARNGLNALIRRGRLFTFLDPELTAEGPVPSTNNRHEGGVNAPLRDMLRLHRGMST
LRRVKAVFWWCCMHSDNPLPAAEILAAMPTDEDIAALCRRIVYEPQKRDGPVEWGDGLVWAELHHSTPWRIDWD
Blast result :
Comments
ISSlgl1 is 50% aa similar to ISBibr1.
References
1] ISfinder annotation (2013)
2] Pukall,R., Lapidus,A., Nolan,M., Copeland,A., Glavina Del Rio,T., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Chertkov,O., Bruce,D., Goodwin,L., Kuske,C., Brettin,T., Detter,J.C., Han,C., Pitluck,S., Pati,A., Mavrommatis,K., Ivanova,N., Ovchinnikova,G., Chen,A., Palaniappan,K., Schneider,S., Rohde,M., Chain,P., D'haeseleer,P., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Kyrpides,N.C., Klenk,H.P. and Hugenholtz,P. (2009) Stand Genomic Sci 1 (3), 234-241.
2] Pukall,R., Lapidus,A., Nolan,M., Copeland,A., Glavina Del Rio,T., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Chertkov,O., Bruce,D., Goodwin,L., Kuske,C., Brettin,T., Detter,J.C., Han,C., Pitluck,S., Pati,A., Mavrommatis,K., Ivanova,N., Ovchinnikova,G., Chen,A., Palaniappan,K., Schneider,S., Rohde,M., Chain,P., D'haeseleer,P., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Kyrpides,N.C., Klenk,H.P. and Hugenholtz,P. (2009) Stand Genomic Sci 1 (3), 234-241.