ISBast1
- Family IS256
- Group IS1249
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_018720 | ND | Bifidobacterium asteroides | Bifidobacterium asteroides PRL2011 |
DNA section
IS Length : 1357 bp
Ends
IR Length : 27
IRL : GGGCTATAGGAACTAAACGCGTTGTTTATGTTGGGGGTTTGGCCTTGTGG
IRR : GGCCTATAGGAACTAAACGCGTTGTTTTAGGTTCTGTGTGTGGGTTTGGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCTTCGGCATGGGT | CCGATCTGGCGTTTGCAAG | 0 | |
| ACCACCGTTACACCATCATA | AGGTTCTGGGAGATAGTGTT | 0 | |
| GATGAGGAAACCAGGTTCTG | GTTTAGTTCCTATAGCCCCT | 0 | |
| TTTCGTCCAGCGGCGATTGC | GACTTTTAACCGTCACGCAA | 0 | |
| GATGACACATTT | TAGTTTTT | TGTGTTCGAATT | 8 |
| CTCGACGACACGCTGTACGA | ACAAATATGTATATTTATGA | 0 | |
| TTCTGATTTTCAACAAATAT | TAAGAAGTTCCTAGAGCAAA | 0 |
DNA sequence
GGGCTATAGGAACTAAACGCGTTGTTTATGTTGGGGGTTTGGCCTTGTGGCTGTAAGCGTGTTGGGTGGTTGTTAATAGGTCGGGTTGTTAATAGGGGTC
TTGCAGGGGTGCCCGTTCCTGTTCGATTGGGGAATGAGAACCAGATCGAAGAGGGCCAGGCATTGCCCCATATGCCATGGGCGGATGCGCAGGCATGGGC
GCAACAGATCAGGCACGCAGCGCTGGATGTGTCCGTCCTGCTCGATCACGTCCACCGCGCGCAGGCAGGACCGGGCCCGCGCCGCGCAGTTGAGGGAGTT
CCTGGACCGGCTGCTGACGGGCAGGACCCGGGAACAGATGGGGGCCATGGGCGCCAGGGCCTGGCGTAAACGGGTCGGCTGGTGCTGGAACATCAAGCCG
GCAATCACACCGGACGGGGTGGTCCATCACACGCTCATGGCCGCCGGCACGCATATGGCACACGGCTGGTGCCTCCTGATAGCGATCGACGGGCAGACGG
GCCAGGTCATCGACCGGCAGTGGTGCCATCAGGAGAACACGGCGGCCTGCACGGCCCTGTTCTCCCGCATCCCCGGGCCCGACGTGCTCATCACCGGCGG
CCTTCGCGGCGTGCAGAAAGCCTGCCATGCCTGCTGGCCGGGCACGCGCATCCAACGCTGCCTGGTGCACGTGCAACGCAACACCAAAACCGACCCGACA
CTCAAACCACGACTTCAGGCCGGCAAGGAACTCAAGCGACTCTCCGACCAGCTCACCCGGGTCCATACCATCGAGGAAGCGGTGCGTTGGGGTGAGGCCT
TGAACGCCTGGCACGAAAGATGGAAAACCCCCATCGACGAACGCACCATGGCCAAGGACGACCCAGCCAACCCCAAAGCCAGCCACCAATCCTGGTGGTG
GACCCACCAGGAACTCCGCCGCTGCTACCGCAGGCTCGAACACCTCTTCCAAGACAGGCAGCTCTTCGCCTTCCTGGAACCCGAACTCACCGCCGGCGGG
CCAGTGGAACGCACCACCAACCGGCTGGAAGGAGGAGTCAACCCACCCATCAAACGCACCCTCCTGCAACACCACGGCCTACCCGAGAGCCACATGAGAC
GCGCCTGCGAATGGCACTGCTACATGAAAACCGACAACCCCGACCCCGCCAGCCTGATCAGGGACGAACACCACCAGCCACAACCAGCACCCAAACGGGA
AACCAGACAGGAACAGGACGAGCCCGAACACTACGGCACCGCCATCAACTGGAACGAGTTCCACACACCAGTCAGATACCCCAACACCACACTCTGACCA
ACACACAACCAAACCCACACACAGAACCTAAAACAACGCGTTTAGTTCCTATAGGCC
TTGCAGGGGTGCCCGTTCCTGTTCGATTGGGGAATGAGAACCAGATCGAAGAGGGCCAGGCATTGCCCCATATGCCATGGGCGGATGCGCAGGCATGGGC
GCAACAGATCAGGCACGCAGCGCTGGATGTGTCCGTCCTGCTCGATCACGTCCACCGCGCGCAGGCAGGACCGGGCCCGCGCCGCGCAGTTGAGGGAGTT
CCTGGACCGGCTGCTGACGGGCAGGACCCGGGAACAGATGGGGGCCATGGGCGCCAGGGCCTGGCGTAAACGGGTCGGCTGGTGCTGGAACATCAAGCCG
GCAATCACACCGGACGGGGTGGTCCATCACACGCTCATGGCCGCCGGCACGCATATGGCACACGGCTGGTGCCTCCTGATAGCGATCGACGGGCAGACGG
GCCAGGTCATCGACCGGCAGTGGTGCCATCAGGAGAACACGGCGGCCTGCACGGCCCTGTTCTCCCGCATCCCCGGGCCCGACGTGCTCATCACCGGCGG
CCTTCGCGGCGTGCAGAAAGCCTGCCATGCCTGCTGGCCGGGCACGCGCATCCAACGCTGCCTGGTGCACGTGCAACGCAACACCAAAACCGACCCGACA
CTCAAACCACGACTTCAGGCCGGCAAGGAACTCAAGCGACTCTCCGACCAGCTCACCCGGGTCCATACCATCGAGGAAGCGGTGCGTTGGGGTGAGGCCT
TGAACGCCTGGCACGAAAGATGGAAAACCCCCATCGACGAACGCACCATGGCCAAGGACGACCCAGCCAACCCCAAAGCCAGCCACCAATCCTGGTGGTG
GACCCACCAGGAACTCCGCCGCTGCTACCGCAGGCTCGAACACCTCTTCCAAGACAGGCAGCTCTTCGCCTTCCTGGAACCCGAACTCACCGCCGGCGGG
CCAGTGGAACGCACCACCAACCGGCTGGAAGGAGGAGTCAACCCACCCATCAAACGCACCCTCCTGCAACACCACGGCCTACCCGAGAGCCACATGAGAC
GCGCCTGCGAATGGCACTGCTACATGAAAACCGACAACCCCGACCCCGCCAGCCTGATCAGGGACGAACACCACCAGCCACAACCAGCACCCAAACGGGA
AACCAGACAGGAACAGGACGAGCCCGAACACTACGGCACCGCCATCAACTGGAACGAGTTCCACACACCAGTCAGATACCCCAACACCACACTCTGACCA
ACACACAACCAAACCCACACACAGAACCTAAAACAACGCGTTTAGTTCCTATAGGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1164 bp | 387 aa | 134 | 1297 | + | No |
Chemistry : DDE
ORF sequence :
MRTRSKRARHCPICHGRMRRHGRNRSGTQRWMCPSCSITSTARRQDRARAAQLREFLDRLLTGRTREQMGAMGARAWRKRVGWCWNIKPAITPDGVVHHT
LMAAGTHMAHGWCLLIAIDGQTGQVIDRQWCHQENTAACTALFSRIPGPDVLITGGLRGVQKACHACWPGTRIQRCLVHVQRNTKTDPTLKPRLQAGKEL
KRLSDQLTRVHTIEEAVRWGEALNAWHERWKTPIDERTMAKDDPANPKASHQSWWWTHQELRRCYRRLEHLFQDRQLFAFLEPELTAGGPVERTTNRLEG
GVNPPIKRTLLQHHGLPESHMRRACEWHCYMKTDNPDPASLIRDEHHQPQPAPKRETRQEQDEPEHYGTAINWNEFHTPVRYPNTTL
LMAAGTHMAHGWCLLIAIDGQTGQVIDRQWCHQENTAACTALFSRIPGPDVLITGGLRGVQKACHACWPGTRIQRCLVHVQRNTKTDPTLKPRLQAGKEL
KRLSDQLTRVHTIEEAVRWGEALNAWHERWKTPIDERTMAKDDPANPKASHQSWWWTHQELRRCYRRLEHLFQDRQLFAFLEPELTAGGPVERTTNRLEG
GVNPPIKRTLLQHHGLPESHMRRACEWHCYMKTDNPDPASLIRDEHHQPQPAPKRETRQEQDEPEHYGTAINWNEFHTPVRYPNTTL
Blast result :
Comments
ISBast1 is 73% aa similar to ISBibr1.
References
1] ISfinder annotation (2013)
2] Bottacini,F., Milani,C., Turroni,F., Sanchez,B., Foroni,E., Duranti,S., Serafini,F., Viappiani,A., Strati,F., Ferrarini,A., Delledonne,M., Henrissat,B., Coutinho,P., Fitzgerald,G.F., Margolles,A., van Sinderen,D. and Ventura,M. (2012) PLoS ONE 7 (9), E44229.
2] Bottacini,F., Milani,C., Turroni,F., Sanchez,B., Foroni,E., Duranti,S., Serafini,F., Viappiani,A., Strati,F., Ferrarini,A., Delledonne,M., Henrissat,B., Coutinho,P., Fitzgerald,G.F., Margolles,A., van Sinderen,D. and Ventura,M. (2012) PLoS ONE 7 (9), E44229.