ISAod1

  • Family IS256
  • Group IS1249
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_DS264586 ND Actinomyces odontolyticus
Actinomyces odontolyticus ATCC 17982
DNA section
IS Length : 1334 bp

Ends


IR Length : 26/27

IRL : GGGTTATAGGACAAAACGTGTTGGTTTTTGGGCTGTCTTTCGTTGCTACA
IRR : GGCTTATAGGTCAAAACGTGTTGGTTTCGGTTTAGTAGGTTTCGTGCCAG

Insertion site


Left flankDirect repeatRight flankDR Length
GTTTTTGTTTTTGCTTGTGG0

DNA sequence

GGGTTATAGGACAAAACGTGTTGGTTTTTGGGCTGTCTTTCGTTGCTACAAAGCCGAAAGGTGGGGGTTGGACTCGTTGTGACTTGAGTTCTTGGTTGGC
CAGGTCGTGTTGGTTTTATCCCGGTTTTTGATTGATATTCCGCGGTAAGGTCGGGGTTTGAATCGGCTTGGATTTGGGGGGATGGGAAATCCTCGATGCA
AAATCTGTGGTGGCACGACGCAAAAATGGGGCTCAACTCGAGCAGGTAGGCCAAGGTTCCGCTGTCTTGCGTGTAGGGCAAGCCAGTCTCGGCGTAACGA
TAGCCGTGCCCGGCATTTCAGTGCGTTTTTAGACTTCGTCACCGGCAAATACACCCTGGCCGATTACGGGCCCAAGGGACGCACCATACGACGGCGTAAC
GAACCATTTTGGCATCTATGGCCAGTTTCTCCATTGGTTGACGAGGTTAACCATGTGATCTTTGTTGACGGAATCTACCTGTCCCACAAGCTGGTGGTTC
TTATTGCCTGCACCAAGACCCATGTGCTTGGCTGGTACGTGGCCAAGGGTGAGACCACCCGCGCCTGGCAAGCACTGATGTCTAGGATCGCGACCCCAGA
TGTTGTCGTGTGCGATGGTGGGCAAGGCATCGCCAGCGCGGTGAAGACCACCTGGCCTACCACCCGGATCCAACGCTGTGTCTTTCACGCCTATAGCGCG
GTCAAGCGTAAGACCACCACCCGGCCACGCACTCAGGCAGGTGTTGATCTCTACAGTCTTGCTCAGGCCTTGCTCGAGGTCACTACCTTTGACCAGGCAG
TGGCATGGATGAGCAAACTCGCCACCTGGAACACCACCTACAAGGAATTCCTAGCCCAGCGCACCCGGCTACCAGACGGACGTTGGGTTGCCACCCATGC
CCGGCTGATCCAGGACAAGAACTCCCTCAACACGCTGGTCAAACAAGGCACGCTGTTTACCTACCTCGATCCCGCCCTTGACCTTAAAGGTGACCCCATT
GCCAGGACGTCGAACCTGATCGAGGGCGGGATTAATACCCAACTACGCTGCGTGCTACGAGCCCACCGTGGCATGAGTCTTAATCACCAGGTCAAGACCA
TGTTGTGGTGGTGCTACCTGCACACCGAGTTCCCTGCCACCCCAGCACACATCCTTAAAACCGCGATCACCGACCAACAGATCATTGACCAATTCGACAA
GGCCAGCCACCGCGCCCAAGCACAAGCCAAGATCGACAGGTGGGGAACCGCAGTTAACTGGACCGACTTCCACCACAGCAGAACCTGGCACGAAACCTAC
TAAACCGAAACCAACACGTTTTGACCTATAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1122 bp373 aa1821303+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGNPRCKICGGTTQKWGSTRAGRPRFRCLACRASQSRRNDSRARHFSAFLDFVTGKYTLADYGPKGRTIRRRNEPFWHLWPVSPLVDEVNHVIFVDGIYL
SHKLVVLIACTKTHVLGWYVAKGETTRAWQALMSRIATPDVVVCDGGQGIASAVKTTWPTTRIQRCVFHAYSAVKRKTTTRPRTQAGVDLYSLAQALLEV
TTFDQAVAWMSKLATWNTTYKEFLAQRTRLPDGRWVATHARLIQDKNSLNTLVKQGTLFTYLDPALDLKGDPIARTSNLIEGGINTQLRCVLRAHRGMSL
NHQVKTMLWWCYLHTEFPATPAHILKTAITDQQIIDQFDKASHRAQAQAKIDRWGTAVNWTDFHHSRTWHETY

 

Blast result :
Comments
ISAod1 is 55% aa similar to ISCur2.
References
1] ISfinder annotation (2013)
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2007) Direct submission GenBank.