ISCur3
- Family IS256
- Group IS1249
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010545 | ND | Corynebacterium urealyticum | Corynebacterium urealyticum DSM 7109 |
DNA section
IS Length : 1406 bp
Ends
IR Length : 26
IRL : GGGTTAAGTAGCAAAAAGTGTGTCTGATTTTCAGCCTATCTGCTGGTCAG
IRR : GGGTTAAGTAGCAAAAAGTGTGTCTGCCCGGCGTGTCGCCGGGTGGGCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCACGCCAGC | GGGCCAGA | GACGGGTTAA | 8 |
ACCAGCCGCC | CCTCTACA | CCAGGGGACA | 8 |
DNA sequence
GGGTTAAGTAGCAAAAAGTGTGTCTGATTTTCAGCCTATCTGCTGGTCAGGCCGCATAAAACGGGCTTATATAAGGTTCCAGACCTTATTCAGGCCCGTT
TCTTGCCCAATCCACCGGAATGGCTCCTGCATGTGGTATCAGCGGCTTGGTTGTCTTTCTGGGTGACTCCAAACAGACCCCGATGCCCTATATGTACTGG
GCACATGAAGAAAAACGGCACCACAACCAAAGGAACAACCAGATGGCGGTGCAAAAACCCTGACTGCGGATGCTCAACAACACGACACCGCAAAGATCAA
GCACTGGCCCGCGACTTCACAACATTTCACCGCTACGTCACTACGACAGCACCACTGACTCGCATCGCCTCGGAAGTCGGCTGCTCACGCTGGACACTGG
ACCGTAAATTCGAACCATTCTGGCTCATCAATGTCCCTCACGCCCCGGACCCCAACCGGGTCTACGACCAGATCTTCATCGACGGCACCTACACCGACGC
TGGTTGCTTGCTTGTGGCAGCCAGCCACGACCACGTCATCGCATGGCACTGGACACAACGCGAAACCGCCCACGCCTACACCCAACTACTCAAAAACATC
GCCCCACCACTATGCGTTGTCCTCGACGGTGGCCAAGGTGCCTACTCAGCAATCAAAGCCTGCTGGCCCAACACACGGATTCAACGCTGCCTTGTCCATG
CCCAACGCGTCATCCGTCGCTACACCACATCCCGTCCACGCACCGACGCCGGCAAAGCCATCTACGCCCTGGCATTGAAACTGACCCGTATCACCACACT
CGACCAGGCACGGGAGTGGACGCTGCGTCTGCATGACTTCGGACAGGTATTCAAAGCATTCCTCAACGAAAAAACACCCCTCCCCAAAGAACGCCGCACC
CTGAATAAACAGTGGGAATGGACCCACCTGCGAGTTCGCAAGGCATACAACTCCCTGCTGCACCTCTCACGGAAAGGATGGCTGTTTACCTACCTCCAGC
CCCCACCAGAAGCACTCGAACCAAAGCGCTGGGCATCAACAACAAACAGTCTGGAAGGCGGCATCAACGCCCAGATCAAACGCATCGCCGATGCCCACCG
CGGCAGATCCGGGGAACGCCAACGCAAAATGCTCGAGTGGTACCTGCACTCCAAAACGCAGCTGCCTGACGACCCGCTAAAGATCGCCAGGCAGTGCAAT
TACGGACAAGATCAACTCGCCAAAGTCAACGATCTTGTCCCAGAAGACCACAACAAAGCCGACCACGAAACAGGACGACCAGCCTTCTATGACAACGCTA
TCCCAACCGAATACCAACACAACATAGGAATCCGGAAAGGGCCCATGAGATAAAAAGGGCCCACCCGGCGACACGCCGGGCAGACACACTTTTTGCTACT
TAACCC
TCTTGCCCAATCCACCGGAATGGCTCCTGCATGTGGTATCAGCGGCTTGGTTGTCTTTCTGGGTGACTCCAAACAGACCCCGATGCCCTATATGTACTGG
GCACATGAAGAAAAACGGCACCACAACCAAAGGAACAACCAGATGGCGGTGCAAAAACCCTGACTGCGGATGCTCAACAACACGACACCGCAAAGATCAA
GCACTGGCCCGCGACTTCACAACATTTCACCGCTACGTCACTACGACAGCACCACTGACTCGCATCGCCTCGGAAGTCGGCTGCTCACGCTGGACACTGG
ACCGTAAATTCGAACCATTCTGGCTCATCAATGTCCCTCACGCCCCGGACCCCAACCGGGTCTACGACCAGATCTTCATCGACGGCACCTACACCGACGC
TGGTTGCTTGCTTGTGGCAGCCAGCCACGACCACGTCATCGCATGGCACTGGACACAACGCGAAACCGCCCACGCCTACACCCAACTACTCAAAAACATC
GCCCCACCACTATGCGTTGTCCTCGACGGTGGCCAAGGTGCCTACTCAGCAATCAAAGCCTGCTGGCCCAACACACGGATTCAACGCTGCCTTGTCCATG
CCCAACGCGTCATCCGTCGCTACACCACATCCCGTCCACGCACCGACGCCGGCAAAGCCATCTACGCCCTGGCATTGAAACTGACCCGTATCACCACACT
CGACCAGGCACGGGAGTGGACGCTGCGTCTGCATGACTTCGGACAGGTATTCAAAGCATTCCTCAACGAAAAAACACCCCTCCCCAAAGAACGCCGCACC
CTGAATAAACAGTGGGAATGGACCCACCTGCGAGTTCGCAAGGCATACAACTCCCTGCTGCACCTCTCACGGAAAGGATGGCTGTTTACCTACCTCCAGC
CCCCACCAGAAGCACTCGAACCAAAGCGCTGGGCATCAACAACAAACAGTCTGGAAGGCGGCATCAACGCCCAGATCAAACGCATCGCCGATGCCCACCG
CGGCAGATCCGGGGAACGCCAACGCAAAATGCTCGAGTGGTACCTGCACTCCAAAACGCAGCTGCCTGACGACCCGCTAAAGATCGCCAGGCAGTGCAAT
TACGGACAAGATCAACTCGCCAAAGTCAACGATCTTGTCCCAGAAGACCACAACAAAGCCGACCACGAAACAGGACGACCAGCCTTCTATGACAACGCTA
TCCCAACCGAATACCAACACAACATAGGAATCCGGAAAGGGCCCATGAGATAAAAAGGGCCCACCCGGCGACACGCCGGGCAGACACACTTTTTGCTACT
TAACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1149 bp | 382 aa | 205 | 1353 | + | No |
Chemistry : DDE
ORF sequence :
MKKNGTTTKGTTRWRCKNPDCGCSTTRHRKDQALARDFTTFHRYVTTTAPLTRIASEVGCSRWTLDRKFEPFWLINVPHAPDPNRVYDQIFIDGTYTDAG
CLLVAASHDHVIAWHWTQRETAHAYTQLLKNIAPPLCVVLDGGQGAYSAIKACWPNTRIQRCLVHAQRVIRRYTTSRPRTDAGKAIYALALKLTRITTLD
QAREWTLRLHDFGQVFKAFLNEKTPLPKERRTLNKQWEWTHLRVRKAYNSLLHLSRKGWLFTYLQPPPEALEPKRWASTTNSLEGGINAQIKRIADAHRG
RSGERQRKMLEWYLHSKTQLPDDPLKIARQCNYGQDQLAKVNDLVPEDHNKADHETGRPAFYDNAIPTEYQHNIGIRKGPMR
CLLVAASHDHVIAWHWTQRETAHAYTQLLKNIAPPLCVVLDGGQGAYSAIKACWPNTRIQRCLVHAQRVIRRYTTSRPRTDAGKAIYALALKLTRITTLD
QAREWTLRLHDFGQVFKAFLNEKTPLPKERRTLNKQWEWTHLRVRKAYNSLLHLSRKGWLFTYLQPPPEALEPKRWASTTNSLEGGINAQIKRIADAHRG
RSGERQRKMLEWYLHSKTQLPDDPLKIARQCNYGQDQLAKVNDLVPEDHNKADHETGRPAFYDNAIPTEYQHNIGIRKGPMR
Blast result :
Comments
ISCur3 is 88% aa similar to ISAmas1.
References
1] ISfinder annotation (2013)
2] Tauch,A., Trost,E., Tilker,A., Ludewig,U., Schneiker,S., Goesmann,A., Arnold,W., Bekel,T., Brinkrolf,K., Brune,I., Gotker,S., Kalinowski,J., Kamp,P.B., Lobo,F.P., Viehoever,P., Weisshaar,B., Soriano,F., Droge,M. and Puhler,A. (2008) J. Biotechnol. 136 (1-2), 11-21.
2] Tauch,A., Trost,E., Tilker,A., Ludewig,U., Schneiker,S., Goesmann,A., Arnold,W., Bekel,T., Brinkrolf,K., Brune,I., Gotker,S., Kalinowski,J., Kamp,P.B., Lobo,F.P., Viehoever,P., Weisshaar,B., Soriano,F., Droge,M. and Puhler,A. (2008) J. Biotechnol. 136 (1-2), 11-21.