ISCur3

  • Family IS256
  • Group IS1249
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010545 ND Corynebacterium urealyticum
Corynebacterium urealyticum DSM 7109
DNA section
IS Length : 1406 bp

Ends


IR Length : 26

IRL : GGGTTAAGTAGCAAAAAGTGTGTCTGATTTTCAGCCTATCTGCTGGTCAG
IRR : GGGTTAAGTAGCAAAAAGTGTGTCTGCCCGGCGTGTCGCCGGGTGGGCCC

Insertion site


Left flankDirect repeatRight flankDR Length
GCACGCCAGCGGGCCAGAGACGGGTTAA8
ACCAGCCGCCCCTCTACACCAGGGGACA8

DNA sequence

GGGTTAAGTAGCAAAAAGTGTGTCTGATTTTCAGCCTATCTGCTGGTCAGGCCGCATAAAACGGGCTTATATAAGGTTCCAGACCTTATTCAGGCCCGTT
TCTTGCCCAATCCACCGGAATGGCTCCTGCATGTGGTATCAGCGGCTTGGTTGTCTTTCTGGGTGACTCCAAACAGACCCCGATGCCCTATATGTACTGG
GCACATGAAGAAAAACGGCACCACAACCAAAGGAACAACCAGATGGCGGTGCAAAAACCCTGACTGCGGATGCTCAACAACACGACACCGCAAAGATCAA
GCACTGGCCCGCGACTTCACAACATTTCACCGCTACGTCACTACGACAGCACCACTGACTCGCATCGCCTCGGAAGTCGGCTGCTCACGCTGGACACTGG
ACCGTAAATTCGAACCATTCTGGCTCATCAATGTCCCTCACGCCCCGGACCCCAACCGGGTCTACGACCAGATCTTCATCGACGGCACCTACACCGACGC
TGGTTGCTTGCTTGTGGCAGCCAGCCACGACCACGTCATCGCATGGCACTGGACACAACGCGAAACCGCCCACGCCTACACCCAACTACTCAAAAACATC
GCCCCACCACTATGCGTTGTCCTCGACGGTGGCCAAGGTGCCTACTCAGCAATCAAAGCCTGCTGGCCCAACACACGGATTCAACGCTGCCTTGTCCATG
CCCAACGCGTCATCCGTCGCTACACCACATCCCGTCCACGCACCGACGCCGGCAAAGCCATCTACGCCCTGGCATTGAAACTGACCCGTATCACCACACT
CGACCAGGCACGGGAGTGGACGCTGCGTCTGCATGACTTCGGACAGGTATTCAAAGCATTCCTCAACGAAAAAACACCCCTCCCCAAAGAACGCCGCACC
CTGAATAAACAGTGGGAATGGACCCACCTGCGAGTTCGCAAGGCATACAACTCCCTGCTGCACCTCTCACGGAAAGGATGGCTGTTTACCTACCTCCAGC
CCCCACCAGAAGCACTCGAACCAAAGCGCTGGGCATCAACAACAAACAGTCTGGAAGGCGGCATCAACGCCCAGATCAAACGCATCGCCGATGCCCACCG
CGGCAGATCCGGGGAACGCCAACGCAAAATGCTCGAGTGGTACCTGCACTCCAAAACGCAGCTGCCTGACGACCCGCTAAAGATCGCCAGGCAGTGCAAT
TACGGACAAGATCAACTCGCCAAAGTCAACGATCTTGTCCCAGAAGACCACAACAAAGCCGACCACGAAACAGGACGACCAGCCTTCTATGACAACGCTA
TCCCAACCGAATACCAACACAACATAGGAATCCGGAAAGGGCCCATGAGATAAAAAGGGCCCACCCGGCGACACGCCGGGCAGACACACTTTTTGCTACT
TAACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1149 bp382 aa2051353+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKKNGTTTKGTTRWRCKNPDCGCSTTRHRKDQALARDFTTFHRYVTTTAPLTRIASEVGCSRWTLDRKFEPFWLINVPHAPDPNRVYDQIFIDGTYTDAG
CLLVAASHDHVIAWHWTQRETAHAYTQLLKNIAPPLCVVLDGGQGAYSAIKACWPNTRIQRCLVHAQRVIRRYTTSRPRTDAGKAIYALALKLTRITTLD
QAREWTLRLHDFGQVFKAFLNEKTPLPKERRTLNKQWEWTHLRVRKAYNSLLHLSRKGWLFTYLQPPPEALEPKRWASTTNSLEGGINAQIKRIADAHRG
RSGERQRKMLEWYLHSKTQLPDDPLKIARQCNYGQDQLAKVNDLVPEDHNKADHETGRPAFYDNAIPTEYQHNIGIRKGPMR

 

Blast result :
Comments
ISCur3 is 88% aa similar to ISAmas1.
References
1] ISfinder annotation (2013)
2] Tauch,A., Trost,E., Tilker,A., Ludewig,U., Schneiker,S., Goesmann,A., Arnold,W., Bekel,T., Brinkrolf,K., Brune,I., Gotker,S., Kalinowski,J., Kamp,P.B., Lobo,F.P., Viehoever,P., Weisshaar,B., Soriano,F., Droge,M. and Puhler,A. (2008) J. Biotechnol. 136 (1-2), 11-21.