ISCre2

  • Family IS256
  • Group IS1249
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_015673 ND Corynebacterium resistens
Corynebacterium resistens DSM 45100
DNA section
IS Length : 1411 bp

Ends


IR Length : 24

IRL : GGGTTAAGTAGCAAAAAGTGTGTCTGACTTTCAGCATTATTACTGATCAG
IRR : GGGTTAAGTAGCAAAAAGTGTGTCCGCTCGGTGTGTTGCGGGGCGGGCAC

Insertion site


Left flankDirect repeatRight flankDR Length
CTTTGCAGACCTATCGGTTCAGTCAGAC8

DNA sequence

GGGTTAAGTAGCAAAAAGTGTGTCTGACTTTCAGCATTATTACTGATCAGAACGGGTAAATCGGGCGGATATAAGCATCAAGACCTTATATCCGCCCGAT
TAGTGTTCAATCCACCGGAATGGCACCCGCATGTGCTAATCGGGGGTTGGTGTGCTTTCCGGGTGAGTAAAAACAGACCACGATGCCCGATATGCGCTGG
GCAAATGAAGAAAAACGGAACCACTACTAAAGGCACAACCAGGTGGCGATGCAAGGACCCGAACTGCGGCAATTCCACGACGCGAACCCGCACCGACCGC
ACGCAGACCCGCGACTTTAAAGCCTTCGTCTCTTATGCCACCTCCACAGCAACGTTGTCTGAACTCGCCCAGCAACAAGGGGTAAGCCGTTGGACACTTG
ACCGCCGATTCACACCGTTCTGGCTCATCGACATTCCCAACGACGGTGACCCACAGCGCGTCTACGACCAGATCTTCATCGACGGCACCTACACCACCGC
CGGATGCCTACTGGTAGCCGCAAGCCGTGACCACGTCATCTCCTGGCACTGGGCCAAACGCGAGTCAGCCCACGCCTACACGCAGCTACTCCGCAACATC
GCTGAGCCGCTCTGCGTTGTCCTCGACGGCGGGCAAGGCGCCTACTCAGCAATCAAAGCCTGCTGGCCGAACGCGATGATCCAACGATGCCTCGTCCATG
CGCAACGCGTCATCCGCCGCTACACCACAGCACGACCCCGCACCGATGCCGGCAAAGCCATCTACGCCCTGGCGTTGAAACTGACCCGTATCACCACCGT
GGACCACGCACGCAACTGGACACTACGCCTGCACGACTTCGGGCAGGTATTCAACGCATTCCTCAACGAGAAAACGCCCGTGCCAAAAGAGCGCCGCACA
CTCAACAACCAGTGGGAATGGACCCATCTGCGAGTGCGCAAGGCATACAACTCCCTGCTGCACCTCTCACGGAAAGGATGGCTGTTTACCTACCTGCAGC
CCCCACCGAATGCGCTTGAGCCTCAACGCTGGGCTTCAACGACAAACAGTCTGGAAGGCGGCATCAACGCCCAGCTCAAACGCATCGCCGACGCGCATCG
CGGCAGGTCCGGGGAACGCCAACGCAGAATGCTCGAGTGGTACCTGCACTCGAAAACGCAACTGCCTGACGACCCATTAAAAATCGCCAGGCAGTGCAAT
TTCGGCCAAGATCAACTCGCCAAAGTCAACGATCTTGTCGAAGAAGACCACAACAAAGCCGACCAGGAAACAGGCCGACCAGCCTTCTACGACAACGCTA
TCCCAACCGAGTACGAACACTCGATAGGAATCAGAAAAGGCCCCATGAAGTAACAAACGGTGTGCCCGCCCCGCAACACACCGAGCGGACACACTTTTTG
CTACTTAACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1251 bp416 aa1031353+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFNPPEWHPHVLIGGWCAFRVSKNRPRCPICAGQMKKNGTTTKGTTRWRCKDPNCGNSTTRTRTDRTQTRDFKAFVSYATSTATLSELAQQQGVSRWTLD
RRFTPFWLIDIPNDGDPQRVYDQIFIDGTYTTAGCLLVAASRDHVISWHWAKRESAHAYTQLLRNIAEPLCVVLDGGQGAYSAIKACWPNAMIQRCLVHA
QRVIRRYTTARPRTDAGKAIYALALKLTRITTVDHARNWTLRLHDFGQVFNAFLNEKTPVPKERRTLNNQWEWTHLRVRKAYNSLLHLSRKGWLFTYLQP
PPNALEPQRWASTTNSLEGGINAQLKRIADAHRGRSGERQRRMLEWYLHSKTQLPDDPLKIARQCNFGQDQLAKVNDLVEEDHNKADQETGRPAFYDNAI
PTEYEHSIGIRKGPMK

 

Blast result :
Comments
ISCre2 is 93% aa similar to ISAmas1.
References
1] ISfinder annotation (2013)
2] Schroeder,J., Maus,I., Meyer,K., Woerdemann,S. and Tauch,A. (2011) Direct submission GenBank.