ISNagr7
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003377 | ND | Natronobacterium gregoryi | Natronobacterium gregoryi SP2 |
DNA section
IS Length : 1004 bp
Ends
IR Length : 23/29
IRL : CGCTCTTGGGTAGAGGATTGTTGGTCAGTTTTCTGCCGTAGCTAGAAGTC
IRR : CGCTCTTGTGACGTAGATTGTTGGTGAGTCATAGCGCAGTTTCGAGGATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTATTGTGT | TTACAGGA | TTCATGGCAG | 8 |
DNA sequence
CGCTCTTGGGTAGAGGATTGTTGGTCAGTTTTCTGCCGTAGCTAGAAGTCGTAGCGGGCAAGGGTGGCGCGTTCGCGCCACCCGACAAACGATGATTCCA
ATCAAGACGTTCGTCTCGGAGCGTCGTGCCGCGAACCTGCTGGCACAGGTTCGCTGGCGTAACGGTGTCTATTGCCCGCGCTGCCGTGCCGAATCCGTGA
TTCGGTACGGCAGCTATCGAGTGTTCCAGCGGTATCTCTGTAAGAATTGCGACCGCACATTCAATGATCAGACTGGTACCGTCTTCGAACATTCGAAAGT
CGCACTCAGAAAATGGTTCTTCGCCGTCTACGCCTATATCCGATTCAACACGAGTCTCAGGCAGCTAGACGTTGAGATTGATGTCTCGTACAAAACGATC
TACCGGCGCGTCCAGCGCTTTCTCCGAGCACTGGACGCGCCTCGCCCCCAACTCGAAGGACCGGTCGAAATCGACGAACTCTACGTGAAAGCTGGCCTCA
AGGGCCGCGAGCGCGACCGTCCGTCGCGCTCGCGTGGCCTATCCACACGTGGGAGAGGATCCTACGACCAGGACAAGCCACCCGTGTTTCTTCTGGCTGA
TCGCGGCTCTGGCGACCGTTACGTGCTGCCAGCGAAAGCCGCCGATGAATCGACGATTCGACTCCTCCTTGCTGACCGCAAAAAGGAGTCGCTCACTGTC
TATACTGATGGCTTTCGAGCATACGACCCACTGGATGAGGACGACGAATTCGACCGCGAATACGTCGTCCACGGCGACGGTGAGTACGTCGATGGAGACG
TTCACGTCAACACCTGCGAGAGCCACGGATCGCTGGCGCGATCCTGGCTCTCGCCCCATCGCGGCGTCTCCAAGGACAAGCTCACGCCGTATCTCAGAGC
GTTCCAACTCCGTCGTCGTGTCTATCGAAAACCGGGGAAAGAAGCACTGAAAGCCATCCTCGAAACTGCGCTATGACTCACCAACAATCTACGTCACAAG
AGCG
ATCAAGACGTTCGTCTCGGAGCGTCGTGCCGCGAACCTGCTGGCACAGGTTCGCTGGCGTAACGGTGTCTATTGCCCGCGCTGCCGTGCCGAATCCGTGA
TTCGGTACGGCAGCTATCGAGTGTTCCAGCGGTATCTCTGTAAGAATTGCGACCGCACATTCAATGATCAGACTGGTACCGTCTTCGAACATTCGAAAGT
CGCACTCAGAAAATGGTTCTTCGCCGTCTACGCCTATATCCGATTCAACACGAGTCTCAGGCAGCTAGACGTTGAGATTGATGTCTCGTACAAAACGATC
TACCGGCGCGTCCAGCGCTTTCTCCGAGCACTGGACGCGCCTCGCCCCCAACTCGAAGGACCGGTCGAAATCGACGAACTCTACGTGAAAGCTGGCCTCA
AGGGCCGCGAGCGCGACCGTCCGTCGCGCTCGCGTGGCCTATCCACACGTGGGAGAGGATCCTACGACCAGGACAAGCCACCCGTGTTTCTTCTGGCTGA
TCGCGGCTCTGGCGACCGTTACGTGCTGCCAGCGAAAGCCGCCGATGAATCGACGATTCGACTCCTCCTTGCTGACCGCAAAAAGGAGTCGCTCACTGTC
TATACTGATGGCTTTCGAGCATACGACCCACTGGATGAGGACGACGAATTCGACCGCGAATACGTCGTCCACGGCGACGGTGAGTACGTCGATGGAGACG
TTCACGTCAACACCTGCGAGAGCCACGGATCGCTGGCGCGATCCTGGCTCTCGCCCCATCGCGGCGTCTCCAAGGACAAGCTCACGCCGTATCTCAGAGC
GTTCCAACTCCGTCGTCGTGTCTATCGAAAACCGGGGAAAGAAGCACTGAAAGCCATCCTCGAAACTGCGCTATGACTCACCAACAATCTACGTCACAAG
AGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
885 bp | 294 aa | 92 | 976 | + | No |
Chemistry : DDE
ORF sequence :
MIPIKTFVSERRAANLLAQVRWRNGVYCPRCRAESVIRYGSYRVFQRYLCKNCDRTFNDQTGTVFEHSKVALRKWFFAVYAYIRFNTSLRQLDVEIDVSY
KTIYRRVQRFLRALDAPRPQLEGPVEIDELYVKAGLKGRERDRPSRSRGLSTRGRGSYDQDKPPVFLLADRGSGDRYVLPAKAADESTIRLLLADRKKES
LTVYTDGFRAYDPLDEDDEFDREYVVHGDGEYVDGDVHVNTCESHGSLARSWLSPHRGVSKDKLTPYLRAFQLRRRVYRKPGKEALKAILETAL
KTIYRRVQRFLRALDAPRPQLEGPVEIDELYVKAGLKGRERDRPSRSRGLSTRGRGSYDQDKPPVFLLADRGSGDRYVLPAKAADESTIRLLLADRKKES
LTVYTDGFRAYDPLDEDDEFDREYVVHGDGEYVDGDVHVNTCESHGSLARSWLSPHRGVSKDKLTPYLRAFQLRRRVYRKPGKEALKAILETAL
Blast result :
Comments
ISNagr7 is 93% aa similar to ISH4.
References
1] Pfeiffer, F. (2013) Direct submission
2] Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank
2] Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank