ISNagr6
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003377 | ND | Natronobacterium gregoryi | Natronobacterium gregoryi SP2 |
DNA section
IS Length : 1005 bp
Ends
IR Length : 19/25
IRL : CGCTCATGGGTAGAGGATTGTTGGTCAGCCCGCAGCAGTAGCTGAAAGTC
IRR : CGCTCTTGTGGCGGAGATTGTTGGTGACTCATAGCGCAGTTTTGAGGATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATACGGATA | ACCAGCAAAT | 0 | |
ATATCCGTAT | TTGCTGGTTT | 0 |
DNA sequence
CGCTCATGGGTAGAGGATTGTTGGTCAGCCCGCAGCAGTAGCTGAAAGTCGTGGCGGGCAAGGGTGGCGCGTTCGCGCCACCCGACGAAAGCATGATTCC
ACTCAAGACGTTCGTCTCGGAGCGTCGCGCCGCGAACCTGCTCCGACAGGTTCGCTGGCGTGACGGCGTCTATTGCCCACGCTGCCGTGCCGAATCCGCG
ATTCGGTACGGCAGCTATCGGGTGTTTCAGCGATATCGCTGTAAGAATTGCGACCGCACGTTCACCGATCAGACCGGCACCGTCTTTGAACACTCAGCGG
TCGAACTCAGGAAGTGGTTTCTCGCCGTCTACACCTACATCCGCTTCAACACCAGTCTTCGGCAGTTAGACGTAGAGATTGATGTCTCCTACAAAACAGT
GTACCGGCGCGTCCAGCGCTTCCTGCGAGCGCTGGACGCGCCTCAGCCACAACTCGAAGGACCAGTCGAGATTGACGAACTGTACGTGAAAGCCGGACTC
AAAGGCCGCGAGCGCGACCGTCCGTCGCGCTCGCGTGGCCTATCCACGCGCGGAAGAGGATCGTACGAACAGGACAAGCTACCCGTGTTCATTCTGGCTG
ATCGCGGCACTGGCGACCGCTACGTGATCCCAGCGAAAGCCGCTGATGAATCGACGATTCGACTCCTCCTTGCTGACCGTAAAGAGGAGTGGCTCACGGT
CTATACCGACGGCTTTCGAGCGTACGAACCGCTTGATGAGGACGACGCATTCGACCGCGAATACGTCGTCCACGGCGACGGCGAATACGCCGATGGAGAC
GTTCACGTCAATACCTGCGAGAGCCACGGATCGCTGGCGCGATCCTGGCTCTCGCCCCATCGAGGCGTCTCCAAGGACAAGCTCACGCCGTATCTCCGAG
CCTTCCAGCTCCGTCGCCGCGTGTATCGAAAACCGGGAAAAGAAGCGCTGAAAACCATCCTCAAAACTGCGCTATGAGTCACCAACAATCTCCGCCACAA
GAGCG
ACTCAAGACGTTCGTCTCGGAGCGTCGCGCCGCGAACCTGCTCCGACAGGTTCGCTGGCGTGACGGCGTCTATTGCCCACGCTGCCGTGCCGAATCCGCG
ATTCGGTACGGCAGCTATCGGGTGTTTCAGCGATATCGCTGTAAGAATTGCGACCGCACGTTCACCGATCAGACCGGCACCGTCTTTGAACACTCAGCGG
TCGAACTCAGGAAGTGGTTTCTCGCCGTCTACACCTACATCCGCTTCAACACCAGTCTTCGGCAGTTAGACGTAGAGATTGATGTCTCCTACAAAACAGT
GTACCGGCGCGTCCAGCGCTTCCTGCGAGCGCTGGACGCGCCTCAGCCACAACTCGAAGGACCAGTCGAGATTGACGAACTGTACGTGAAAGCCGGACTC
AAAGGCCGCGAGCGCGACCGTCCGTCGCGCTCGCGTGGCCTATCCACGCGCGGAAGAGGATCGTACGAACAGGACAAGCTACCCGTGTTCATTCTGGCTG
ATCGCGGCACTGGCGACCGCTACGTGATCCCAGCGAAAGCCGCTGATGAATCGACGATTCGACTCCTCCTTGCTGACCGTAAAGAGGAGTGGCTCACGGT
CTATACCGACGGCTTTCGAGCGTACGAACCGCTTGATGAGGACGACGCATTCGACCGCGAATACGTCGTCCACGGCGACGGCGAATACGCCGATGGAGAC
GTTCACGTCAATACCTGCGAGAGCCACGGATCGCTGGCGCGATCCTGGCTCTCGCCCCATCGAGGCGTCTCCAAGGACAAGCTCACGCCGTATCTCCGAG
CCTTCCAGCTCCGTCGCCGCGTGTATCGAAAACCGGGAAAAGAAGCGCTGAAAACCATCCTCAAAACTGCGCTATGAGTCACCAACAATCTCCGCCACAA
GAGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
885 bp | 294 aa | 93 | 977 | + | No |
Chemistry : DDE
ORF sequence :
MIPLKTFVSERRAANLLRQVRWRDGVYCPRCRAESAIRYGSYRVFQRYRCKNCDRTFTDQTGTVFEHSAVELRKWFLAVYTYIRFNTSLRQLDVEIDVSY
KTVYRRVQRFLRALDAPQPQLEGPVEIDELYVKAGLKGRERDRPSRSRGLSTRGRGSYEQDKLPVFILADRGTGDRYVIPAKAADESTIRLLLADRKEEW
LTVYTDGFRAYEPLDEDDAFDREYVVHGDGEYADGDVHVNTCESHGSLARSWLSPHRGVSKDKLTPYLRAFQLRRRVYRKPGKEALKTILKTAL
KTVYRRVQRFLRALDAPQPQLEGPVEIDELYVKAGLKGRERDRPSRSRGLSTRGRGSYEQDKLPVFILADRGTGDRYVIPAKAADESTIRLLLADRKEEW
LTVYTDGFRAYEPLDEDDAFDREYVVHGDGEYADGDVHVNTCESHGSLARSWLSPHRGVSKDKLTPYLRAFQLRRRVYRKPGKEALKTILKTAL
Blast result :
Comments
ISNagr6 is 93% aa similar to ISH4.
References
1] Pfeiffer, F. (2013) Direct submission
2] Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank
2] Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank