ISNagr6

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003377 ND Natronobacterium gregoryi
Natronobacterium gregoryi SP2
DNA section
IS Length : 1005 bp

Ends


IR Length : 19/25

IRL : CGCTCATGGGTAGAGGATTGTTGGTCAGCCCGCAGCAGTAGCTGAAAGTC
IRR : CGCTCTTGTGGCGGAGATTGTTGGTGACTCATAGCGCAGTTTTGAGGATG

Insertion site


Left flankDirect repeatRight flankDR Length
TATACGGATAACCAGCAAAT0
ATATCCGTATTTGCTGGTTT0

DNA sequence

CGCTCATGGGTAGAGGATTGTTGGTCAGCCCGCAGCAGTAGCTGAAAGTCGTGGCGGGCAAGGGTGGCGCGTTCGCGCCACCCGACGAAAGCATGATTCC
ACTCAAGACGTTCGTCTCGGAGCGTCGCGCCGCGAACCTGCTCCGACAGGTTCGCTGGCGTGACGGCGTCTATTGCCCACGCTGCCGTGCCGAATCCGCG
ATTCGGTACGGCAGCTATCGGGTGTTTCAGCGATATCGCTGTAAGAATTGCGACCGCACGTTCACCGATCAGACCGGCACCGTCTTTGAACACTCAGCGG
TCGAACTCAGGAAGTGGTTTCTCGCCGTCTACACCTACATCCGCTTCAACACCAGTCTTCGGCAGTTAGACGTAGAGATTGATGTCTCCTACAAAACAGT
GTACCGGCGCGTCCAGCGCTTCCTGCGAGCGCTGGACGCGCCTCAGCCACAACTCGAAGGACCAGTCGAGATTGACGAACTGTACGTGAAAGCCGGACTC
AAAGGCCGCGAGCGCGACCGTCCGTCGCGCTCGCGTGGCCTATCCACGCGCGGAAGAGGATCGTACGAACAGGACAAGCTACCCGTGTTCATTCTGGCTG
ATCGCGGCACTGGCGACCGCTACGTGATCCCAGCGAAAGCCGCTGATGAATCGACGATTCGACTCCTCCTTGCTGACCGTAAAGAGGAGTGGCTCACGGT
CTATACCGACGGCTTTCGAGCGTACGAACCGCTTGATGAGGACGACGCATTCGACCGCGAATACGTCGTCCACGGCGACGGCGAATACGCCGATGGAGAC
GTTCACGTCAATACCTGCGAGAGCCACGGATCGCTGGCGCGATCCTGGCTCTCGCCCCATCGAGGCGTCTCCAAGGACAAGCTCACGCCGTATCTCCGAG
CCTTCCAGCTCCGTCGCCGCGTGTATCGAAAACCGGGAAAAGAAGCGCTGAAAACCATCCTCAAAACTGCGCTATGAGTCACCAACAATCTCCGCCACAA
GAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
885 bp294 aa93977+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIPLKTFVSERRAANLLRQVRWRDGVYCPRCRAESAIRYGSYRVFQRYRCKNCDRTFTDQTGTVFEHSAVELRKWFLAVYTYIRFNTSLRQLDVEIDVSY
KTVYRRVQRFLRALDAPQPQLEGPVEIDELYVKAGLKGRERDRPSRSRGLSTRGRGSYEQDKLPVFILADRGTGDRYVIPAKAADESTIRLLLADRKEEW
LTVYTDGFRAYEPLDEDDAFDREYVVHGDGEYADGDVHVNTCESHGSLARSWLSPHRGVSKDKLTPYLRAFQLRRRVYRKPGKEALKTILKTAL

 

Blast result :
Comments
ISNagr6 is 93% aa similar to ISH4.
References
1] Pfeiffer, F. (2013) Direct submission
2] Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank