ISNma4

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001932 ND Natrialba magadii
Natrialba magadii ATCC 43099
DNA section
IS Length : 744 bp

Ends


IR Length : 12

IRL : GGCACTGTCTAGATGTGAGTTTGAGGAACGAACAGGTAGTGGCGAGAAGT
IRR : GGCACTGTCTAGTTCAGCACCTTCTCAGCTGGCGTTCGGCCATTGAGCGC

Insertion site


Left flankDirect repeatRight flankDR Length
TGATCTGCAGGAATCCGAAA0

DNA sequence

GGCACTGTCTAGATGTGAGTTTGAGGAACGAACAGGTAGTGGCGAGAAGTGTCCAATGCAACTCGCCAACCTGCTCAGAGAGACCTTAGACGTGGATTGT
GATGAGGTTTGGGAGAACAAGCGCACCCCGACACCCGTCAGGGTGTTCGGGGTGCGTCTCCATTCGATGGGCTTGTCGGTTCGGGAAGTCGTCGTAGTTC
TTGAATTACTCGGCATTGACCGTTCTCACGGCGCAATCTGGAACTGGACACACAAACTCTCGGAAGTGCAGAGTGACCCGCCGACGGCGCAGCCGTCGCG
GGTCGCGGTTGATGAGAAACAAATCGAGGTAGACGGCGAGAAAAAGTGGCTGTACACCGCGATCGACACAGAATCAAAGCTACTGCTCGAAATTGACGTC
TACAGCCGCCGCGGGACTGACCCCGCGGCGGCGTTCCTGCACCGTCTTACGGAGAAACACGATCTCAACGAGTCGGAGTTTCTCGTCGATGCTGGCGGCT
ATCTGATTGCCCTCGCGCGTCACGACTTGAGCGGTCAGCTCAACTACAGCGAGCGAAACCACGTTGAAAAGTGGTTTCAGACTGTCTCGATGCGGATCGA
CCGCTTTCACTCCTTCTGGCGGGACAGTCCGACCAGCGCAAGACGCTGGCTGAGACGCTTCAGGCACCACTATAACCACAATCGGCCGAATCAAGCGCTC
AATGGCCGAACGCCAGCTGAGAAGGTGCTGAACTAGACAGTGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
681 bp226 aa56736+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQLANLLRETLDVDCDEVWENKRTPTPVRVFGVRLHSMGLSVREVVVVLELLGIDRSHGAIWNWTHKLSEVQSDPPTAQPSRVAVDEKQIEVDGEKKWLY
TAIDTESKLLLEIDVYSRRGTDPAAAFLHRLTEKHDLNESEFLVDAGGYLIALARHDLSGQLNYSERNHVEKWFQTVSMRIDRFHSFWRDSPTSARRWLR
RFRHHYNHNRPNQALNGRTPAEKVLN

 

Blast result :
Comments
ISNma4 is 90% aa similar to ISH17.
References
1] Pfeiffer, F. (2013) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165