ISNma4
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001932 | ND | Natrialba magadii | Natrialba magadii ATCC 43099 |
DNA section
IS Length : 744 bp
Ends
IR Length : 12
IRL : GGCACTGTCTAGATGTGAGTTTGAGGAACGAACAGGTAGTGGCGAGAAGT
IRR : GGCACTGTCTAGTTCAGCACCTTCTCAGCTGGCGTTCGGCCATTGAGCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGATCTGCAG | GAATCCGAAA | 0 |
DNA sequence
GGCACTGTCTAGATGTGAGTTTGAGGAACGAACAGGTAGTGGCGAGAAGTGTCCAATGCAACTCGCCAACCTGCTCAGAGAGACCTTAGACGTGGATTGT
GATGAGGTTTGGGAGAACAAGCGCACCCCGACACCCGTCAGGGTGTTCGGGGTGCGTCTCCATTCGATGGGCTTGTCGGTTCGGGAAGTCGTCGTAGTTC
TTGAATTACTCGGCATTGACCGTTCTCACGGCGCAATCTGGAACTGGACACACAAACTCTCGGAAGTGCAGAGTGACCCGCCGACGGCGCAGCCGTCGCG
GGTCGCGGTTGATGAGAAACAAATCGAGGTAGACGGCGAGAAAAAGTGGCTGTACACCGCGATCGACACAGAATCAAAGCTACTGCTCGAAATTGACGTC
TACAGCCGCCGCGGGACTGACCCCGCGGCGGCGTTCCTGCACCGTCTTACGGAGAAACACGATCTCAACGAGTCGGAGTTTCTCGTCGATGCTGGCGGCT
ATCTGATTGCCCTCGCGCGTCACGACTTGAGCGGTCAGCTCAACTACAGCGAGCGAAACCACGTTGAAAAGTGGTTTCAGACTGTCTCGATGCGGATCGA
CCGCTTTCACTCCTTCTGGCGGGACAGTCCGACCAGCGCAAGACGCTGGCTGAGACGCTTCAGGCACCACTATAACCACAATCGGCCGAATCAAGCGCTC
AATGGCCGAACGCCAGCTGAGAAGGTGCTGAACTAGACAGTGCC
GATGAGGTTTGGGAGAACAAGCGCACCCCGACACCCGTCAGGGTGTTCGGGGTGCGTCTCCATTCGATGGGCTTGTCGGTTCGGGAAGTCGTCGTAGTTC
TTGAATTACTCGGCATTGACCGTTCTCACGGCGCAATCTGGAACTGGACACACAAACTCTCGGAAGTGCAGAGTGACCCGCCGACGGCGCAGCCGTCGCG
GGTCGCGGTTGATGAGAAACAAATCGAGGTAGACGGCGAGAAAAAGTGGCTGTACACCGCGATCGACACAGAATCAAAGCTACTGCTCGAAATTGACGTC
TACAGCCGCCGCGGGACTGACCCCGCGGCGGCGTTCCTGCACCGTCTTACGGAGAAACACGATCTCAACGAGTCGGAGTTTCTCGTCGATGCTGGCGGCT
ATCTGATTGCCCTCGCGCGTCACGACTTGAGCGGTCAGCTCAACTACAGCGAGCGAAACCACGTTGAAAAGTGGTTTCAGACTGTCTCGATGCGGATCGA
CCGCTTTCACTCCTTCTGGCGGGACAGTCCGACCAGCGCAAGACGCTGGCTGAGACGCTTCAGGCACCACTATAACCACAATCGGCCGAATCAAGCGCTC
AATGGCCGAACGCCAGCTGAGAAGGTGCTGAACTAGACAGTGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 56 | 736 | + | No |
Chemistry : DDE
ORF sequence :
MQLANLLRETLDVDCDEVWENKRTPTPVRVFGVRLHSMGLSVREVVVVLELLGIDRSHGAIWNWTHKLSEVQSDPPTAQPSRVAVDEKQIEVDGEKKWLY
TAIDTESKLLLEIDVYSRRGTDPAAAFLHRLTEKHDLNESEFLVDAGGYLIALARHDLSGQLNYSERNHVEKWFQTVSMRIDRFHSFWRDSPTSARRWLR
RFRHHYNHNRPNQALNGRTPAEKVLN
TAIDTESKLLLEIDVYSRRGTDPAAAFLHRLTEKHDLNESEFLVDAGGYLIALARHDLSGQLNYSERNHVEKWFQTVSMRIDRFHSFWRDSPTSARRWLR
RFRHHYNHNRPNQALNGRTPAEKVLN
Blast result :
Comments
ISNma4 is 90% aa similar to ISH17.
References
1] Pfeiffer, F. (2013) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165