ISNamo13
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis 8.8.11 |
DNA section
IS Length : 745 bp
Ends
IR Length : 16/18
IRL : GGCACTGTCTAGTTAAACTAGTTTGAGGAACGAGCAGGTCGTCGAGGCAA
IRR : GGCACTGTCTAGTTTAGCACCTCGTCAGCTGGCGTTCGTCCGTTGAGCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTACATCTCT | GGTTTCTA | GCTCAAACCA | 8 |
CCGTATTTTG | CACCAAATCA | 0 | |
TGCTGCTCAA | CTTGGAAGCA | 0 |
DNA sequence
GGCACTGTCTAGTTAAACTAGTTTGAGGAACGAGCAGGTCGTCGAGGCAATTTGGGATGATGCTCGCAGACCTGCTCAGCGAGTGTTTTGCGGCGGATTT
AGAAGAATGTTGGGAGCGTGAGCGGACGGTGACGCCCGTCAGGGCGTTCGCCGTCCGACTCCACGCGACCGGTTGTTCACTCAGAGAAACAACAACGATT
CTTGCTGAATTAGGCGTAGAACGCTCTCACGGAGCGGTTTGGAATTGGGTGCATCGGGTTGCTGACAGCGTTCCTGACCCGCCGTCGGCGCAGCCGACGC
GGGTCGCTGTCGACGAGACTGCTGTCAAAATCAATGGAGAGTGGTCTTGGTTATACGCTGCAATAGACATCGAGACGAAGTTGATCCTCGACGTACAATT
GTTTGGACGACATGGCACCGATCCGGCGGCTGCGTTTCTGCATGGACTCCGCGAGAAGCACGATCTCTCCGACACCGTGTTTCTCGTCGATGGCTATGGC
TATCAGACTGCCCTTGCTCGGTTAGGACTGAGTGGTCGGCTTGATTACGTCGACCGAAACCTCATCGAAAAGTGGTTTCACACACTCAAAATGCGGGTCG
ACCGCTTCCATAATTCATGGGTCGGCAGTCGGTCAAGCGCACGTGAATGGTTTGAACAGTTCACACACTACTACAACCGCCAACGACCGCATCAATCGCT
CAACGGACGAACGCCAGCTGACGAGGTGCTAAACTAGACAGTGCC
AGAAGAATGTTGGGAGCGTGAGCGGACGGTGACGCCCGTCAGGGCGTTCGCCGTCCGACTCCACGCGACCGGTTGTTCACTCAGAGAAACAACAACGATT
CTTGCTGAATTAGGCGTAGAACGCTCTCACGGAGCGGTTTGGAATTGGGTGCATCGGGTTGCTGACAGCGTTCCTGACCCGCCGTCGGCGCAGCCGACGC
GGGTCGCTGTCGACGAGACTGCTGTCAAAATCAATGGAGAGTGGTCTTGGTTATACGCTGCAATAGACATCGAGACGAAGTTGATCCTCGACGTACAATT
GTTTGGACGACATGGCACCGATCCGGCGGCTGCGTTTCTGCATGGACTCCGCGAGAAGCACGATCTCTCCGACACCGTGTTTCTCGTCGATGGCTATGGC
TATCAGACTGCCCTTGCTCGGTTAGGACTGAGTGGTCGGCTTGATTACGTCGACCGAAACCTCATCGAAAAGTGGTTTCACACACTCAAAATGCGGGTCG
ACCGCTTCCATAATTCATGGGTCGGCAGTCGGTCAAGCGCACGTGAATGGTTTGAACAGTTCACACACTACTACAACCGCCAACGACCGCATCAATCGCT
CAACGGACGAACGCCAGCTGACGAGGTGCTAAACTAGACAGTGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 57 | 737 | + | No |
Chemistry : DDE
ORF sequence :
MMLADLLSECFAADLEECWERERTVTPVRAFAVRLHATGCSLRETTTILAELGVERSHGAVWNWVHRVADSVPDPPSAQPTRVAVDETAVKINGEWSWLY
AAIDIETKLILDVQLFGRHGTDPAAAFLHGLREKHDLSDTVFLVDGYGYQTALARLGLSGRLDYVDRNLIEKWFHTLKMRVDRFHNSWVGSRSSAREWFE
QFTHYYNRQRPHQSLNGRTPADEVLN
AAIDIETKLILDVQLFGRHGTDPAAAFLHGLREKHDLSDTVFLVDGYGYQTALARLGLSGRLDYVDRNLIEKWFHTLKMRVDRFHNSWVGSRSSAREWFE
QFTHYYNRQRPHQSLNGRTPADEVLN
Blast result :
Comments
ISNamo13 is 77% aa similar to ISH17.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513