ISNamo13

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF582854 ND Natronomonas moolapensis
Natronomonas moolapensis 8.8.11
DNA section
IS Length : 745 bp

Ends


IR Length : 16/18

IRL : GGCACTGTCTAGTTAAACTAGTTTGAGGAACGAGCAGGTCGTCGAGGCAA
IRR : GGCACTGTCTAGTTTAGCACCTCGTCAGCTGGCGTTCGTCCGTTGAGCGA

Insertion site


Left flankDirect repeatRight flankDR Length
TTACATCTCTGGTTTCTAGCTCAAACCA8
CCGTATTTTGCACCAAATCA0
TGCTGCTCAACTTGGAAGCA0

DNA sequence

GGCACTGTCTAGTTAAACTAGTTTGAGGAACGAGCAGGTCGTCGAGGCAATTTGGGATGATGCTCGCAGACCTGCTCAGCGAGTGTTTTGCGGCGGATTT
AGAAGAATGTTGGGAGCGTGAGCGGACGGTGACGCCCGTCAGGGCGTTCGCCGTCCGACTCCACGCGACCGGTTGTTCACTCAGAGAAACAACAACGATT
CTTGCTGAATTAGGCGTAGAACGCTCTCACGGAGCGGTTTGGAATTGGGTGCATCGGGTTGCTGACAGCGTTCCTGACCCGCCGTCGGCGCAGCCGACGC
GGGTCGCTGTCGACGAGACTGCTGTCAAAATCAATGGAGAGTGGTCTTGGTTATACGCTGCAATAGACATCGAGACGAAGTTGATCCTCGACGTACAATT
GTTTGGACGACATGGCACCGATCCGGCGGCTGCGTTTCTGCATGGACTCCGCGAGAAGCACGATCTCTCCGACACCGTGTTTCTCGTCGATGGCTATGGC
TATCAGACTGCCCTTGCTCGGTTAGGACTGAGTGGTCGGCTTGATTACGTCGACCGAAACCTCATCGAAAAGTGGTTTCACACACTCAAAATGCGGGTCG
ACCGCTTCCATAATTCATGGGTCGGCAGTCGGTCAAGCGCACGTGAATGGTTTGAACAGTTCACACACTACTACAACCGCCAACGACCGCATCAATCGCT
CAACGGACGAACGCCAGCTGACGAGGTGCTAAACTAGACAGTGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
681 bp226 aa57737+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMLADLLSECFAADLEECWERERTVTPVRAFAVRLHATGCSLRETTTILAELGVERSHGAVWNWVHRVADSVPDPPSAQPTRVAVDETAVKINGEWSWLY
AAIDIETKLILDVQLFGRHGTDPAAAFLHGLREKHDLSDTVFLVDGYGYQTALARLGLSGRLDYVDRNLIEKWFHTLKMRVDRFHNSWVGSRSSAREWFE
QFTHYYNRQRPHQSLNGRTPADEVLN

 

Blast result :
Comments
ISNamo13 is 77% aa similar to ISH17.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513