ISNamo11

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF582854 ND Natronomonas moolapensis
Natronomonas moolapensis 8.8.11
DNA section
IS Length : 698 bp

Ends


IR Length : 12/17

IRL : GACGGTGTTCAAATACGGATTGAAAGGTGAGGCGGTGCGTTTTCAAACTG
IRR : CCTCGTGTTCAGATACGCTGATTCCATGCGAAAGCAACGGATCTGAGCCA

Insertion site


Left flankDirect repeatRight flankDR Length
TGTTGGGCCGGCAAGCGCCAGGAGCCTC8

DNA sequence

GACGGTGTTCAAATACGGATTGAAAGGTGAGGCGGTGCGTTTTCAAACTGATTTATGCCCGAAAACGACCGCCTCAGCGGCTGTTTAGACGAGATCAACG
TAGAGTTCGTGGAGCGAGAAGCAACACCGAAGCTGTTGATGAAGCCCAGTATGCAGCTCCATCTCGCAGGATTATCGCTTTCGAATACTGTTTCGTTTCT
TGAGGTATTCGGTGTTGACCGGGGTCGATCCACCGTTCACAGCTGGGTTCACGAGGCCGATTTACAGCCGGAATCTGGTCGGTGCCCGAATCACGTTGCG
GTCGATGAAGCCGTGATTCAACTTGACGATGAACAATATTGGCTGTACGCCGCTGTCGATCCGGATTCAAACGATTTACTTCATACAAAGCTTGAACCGA
GAAGAACGAACGTGGTCGCAGATCAGTTTTTCGCGGAACTCCGCGACAAACACGACGTGGATGACGCGATCTTTCTCGTCGATGAAGCGGTTCCGCTTCA
CCGAGCCTGTGACAAACACGACCTCGGCTTCAGATACGAACGACATAGAGATCGGAACAGCGTCGAACGTGTCTTTCGCGAGGTAACACGCAGAACTACC
AGCTTCTCAAACTGTTTCAGCAACGCCAAAGCAGAAACTGCTGATAAGTGGCTCAGATCCGTTGCTTTCGCATGGAATCAGCGTATCTGAACACGAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
636 bp211 aa55690+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPENDRLSGCLDEINVEFVEREATPKLLMKPSMQLHLAGLSLSNTVSFLEVFGVDRGRSTVHSWVHEADLQPESGRCPNHVAVDEAVIQLDDEQYWLYAA
VDPDSNDLLHTKLEPRRTNVVADQFFAELRDKHDVDDAIFLVDEAVPLHRACDKHDLGFRYERHRDRNSVERVFREVTRRTTSFSNCFSNAKAETADKWL
RSVAFAWNQRI

 

Blast result :
Comments
ISNamo11 is 86% aa similar to ISNamo10.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513