ISNamo6

  • Family ISH3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF582854 ND Natronomonas moolapensis
Natronomonas moolapensis 8.8.11
DNA section
IS Length : 1440 bp

Ends


IR Length : 18/20

IRL : CGGTACTTCCCAACCGGTGTGAGCGGCGGAGCTAGATCACCGGTCTGATT
IRR : CGGTACTTCCCAATCGATGTTTCGGCGGGTCGCTGGATCGGTGAGTCTCT

Insertion site


Left flankDirect repeatRight flankDR Length
AACACATCAGAATATGATCTAGATT5

DNA sequence

CGGTACTTCCCAACCGGTGTGAGCGGCGGAGCTAGATCACCGGTCTGATTGAGGAAGACGTCTGGTTGGGTAAGTGTGCTTGATCTCCCCGAACCAGACG
GTGTTCTTTCAGCAAGGGACGTCAAAGAAGTGGCGGCTGATGTAATCACAGAGCTTCCTCTGCCAGGAATCGAGGGCTCGCCCCTCGATTCCGGCGATAT
CTGGCCGGTCGTTACCATGGCCAGCGTCAACCAGACGTCCGTCTGGGACGTGACCTCCCAGACGGACGGTACCCCCTGTGACGACACCGTCATGACCTGG
TTGCACACCCTCCAGCGTGGTTGGCTCGAGTTCAGTGCCAATCTCCTGTTTCGGCACCTCGCCCTGACGATTCTCGACCCTGACCGGTCGAGAATCGTCT
CCATCGACTTCGTCGATAACCCCTATCACGGCCACCCCGACGAGGACGACGGCGAACTCTGCTCGTCCAGTCCCACCGACGGCACGACGACCTGCCACCG
CTACTGCACCGCCTACGTCGTCTCGAACGGCAAACCCGTGACGCTGGCGCTGACCTACGTCCGCAGCGACGAGCAGGAAGCCGACGCGGTCGAGCGCGTC
CTCGACCGCGTCGGCGCCTACCCATTCGCCATCGACCTGCTGCTGGCTGATCGAGGCTTCTACAACGGGCGCGTCATCCGTCGTGGACGGGAGCTGGCAA
CCACCGTGATCCCTGTCCAGGAGAAGGGTGAGCGGATGAAAGAGAAACTCGACACGCACTGCTCGTACATGACGACCTACCGGATGTTCAAGGACAGCGA
GCGGGAACTCCGGTTCCCGCTCGCAGTTTCGGTCTCGTATCACAACGGTGACCGAGGGAAACACGGGGAGGTGGTGCGGGGGTACGTGGCGTGCGATCTG
GCCGATCGCACGCCCACGCAGATCGAGCGTCGCTACCGGAAACGATCGGCGATCGAGACGAGCTATCGGCTGTTTCGCCAGGCGCGAGCGACGACGACAA
CCCAAGATCCACTCGTTCGATTTGCGTTCGTCCTGGTGAGTTTCTTGTTGGAGAATATCTGGTTAGTGCTGCGATGGGCGGTCGTCGCCCGCCCCCGGCG
GGGCGGGCGCGACCTGCCAACGCAGTTCACGTTCGGTACCTTCTGTGACTGGATCAGGCACGTACTGGAACAGGAGTTGGAGCGTCGGTGGGAGATAGAG
ATGAACAGAACTGGCGTCCCGGACGCATACGGATCGGCCGCGGGCTGAACGCTCAGCCCGCGGCCTCGGGGTGCCCGCTGTGAGCGGCAGCTCTCAGTTG
AGACGTCGACATCGTTCGACACAGCTCATCTCGGCACCTCAGAACTCGTTCAGCGTGAAGTCACCTCAAGAACACGGCGGTGATCGCTGGAGAGACTCAC
CGATCCAGCGACCCGCCGAAACATCGATTGGGAAGTACCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1171 bp390 aa781248+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLDLPEPDGVLSARDVKEVAADVITELPLPGIEGSPLDSGDIWPVVTMASVNQTSVWDVTSQTDGTPCDDTVMTWLHTLQRGWLEFSANLLFRHLALTIL
DPDRSRIVSIDFVDNPYHGHPDEDDGELCSSSPTDGTTTCHRYCTAYVVSNGKPVTLALTYVRSDEQEADAVERVLDRVGAYPFAIDLLLADRGFYNGRV
IRRGRELATTVIPVQEKGERMKEKLDTHCSYMTTYRMFKDSERELRFPLAVSVSYHNGDRGKHGEVVRGYVACDLADRTPTQIERRYRKRSAIETSYRLF
RQARATTTTQDPLVRFAFVLVSFLLENIWLVLRWAVVARPRRGGRDLPTQFTFGTFCDWIRHVLEQELERRWEIEMNRTGVPDAYGSAAG

 

Blast result :
Comments
ISNamo6 is 85% aa similar to ISHla9.
IS_pep_1 is Nmlp_2630.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513