ISNamo6
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis 8.8.11 |
DNA section
IS Length : 1440 bp
Ends
IR Length : 18/20
IRL : CGGTACTTCCCAACCGGTGTGAGCGGCGGAGCTAGATCACCGGTCTGATT
IRR : CGGTACTTCCCAATCGATGTTTCGGCGGGTCGCTGGATCGGTGAGTCTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACACATCAG | AATAT | GATCTAGATT | 5 |
DNA sequence
CGGTACTTCCCAACCGGTGTGAGCGGCGGAGCTAGATCACCGGTCTGATTGAGGAAGACGTCTGGTTGGGTAAGTGTGCTTGATCTCCCCGAACCAGACG
GTGTTCTTTCAGCAAGGGACGTCAAAGAAGTGGCGGCTGATGTAATCACAGAGCTTCCTCTGCCAGGAATCGAGGGCTCGCCCCTCGATTCCGGCGATAT
CTGGCCGGTCGTTACCATGGCCAGCGTCAACCAGACGTCCGTCTGGGACGTGACCTCCCAGACGGACGGTACCCCCTGTGACGACACCGTCATGACCTGG
TTGCACACCCTCCAGCGTGGTTGGCTCGAGTTCAGTGCCAATCTCCTGTTTCGGCACCTCGCCCTGACGATTCTCGACCCTGACCGGTCGAGAATCGTCT
CCATCGACTTCGTCGATAACCCCTATCACGGCCACCCCGACGAGGACGACGGCGAACTCTGCTCGTCCAGTCCCACCGACGGCACGACGACCTGCCACCG
CTACTGCACCGCCTACGTCGTCTCGAACGGCAAACCCGTGACGCTGGCGCTGACCTACGTCCGCAGCGACGAGCAGGAAGCCGACGCGGTCGAGCGCGTC
CTCGACCGCGTCGGCGCCTACCCATTCGCCATCGACCTGCTGCTGGCTGATCGAGGCTTCTACAACGGGCGCGTCATCCGTCGTGGACGGGAGCTGGCAA
CCACCGTGATCCCTGTCCAGGAGAAGGGTGAGCGGATGAAAGAGAAACTCGACACGCACTGCTCGTACATGACGACCTACCGGATGTTCAAGGACAGCGA
GCGGGAACTCCGGTTCCCGCTCGCAGTTTCGGTCTCGTATCACAACGGTGACCGAGGGAAACACGGGGAGGTGGTGCGGGGGTACGTGGCGTGCGATCTG
GCCGATCGCACGCCCACGCAGATCGAGCGTCGCTACCGGAAACGATCGGCGATCGAGACGAGCTATCGGCTGTTTCGCCAGGCGCGAGCGACGACGACAA
CCCAAGATCCACTCGTTCGATTTGCGTTCGTCCTGGTGAGTTTCTTGTTGGAGAATATCTGGTTAGTGCTGCGATGGGCGGTCGTCGCCCGCCCCCGGCG
GGGCGGGCGCGACCTGCCAACGCAGTTCACGTTCGGTACCTTCTGTGACTGGATCAGGCACGTACTGGAACAGGAGTTGGAGCGTCGGTGGGAGATAGAG
ATGAACAGAACTGGCGTCCCGGACGCATACGGATCGGCCGCGGGCTGAACGCTCAGCCCGCGGCCTCGGGGTGCCCGCTGTGAGCGGCAGCTCTCAGTTG
AGACGTCGACATCGTTCGACACAGCTCATCTCGGCACCTCAGAACTCGTTCAGCGTGAAGTCACCTCAAGAACACGGCGGTGATCGCTGGAGAGACTCAC
CGATCCAGCGACCCGCCGAAACATCGATTGGGAAGTACCG
GTGTTCTTTCAGCAAGGGACGTCAAAGAAGTGGCGGCTGATGTAATCACAGAGCTTCCTCTGCCAGGAATCGAGGGCTCGCCCCTCGATTCCGGCGATAT
CTGGCCGGTCGTTACCATGGCCAGCGTCAACCAGACGTCCGTCTGGGACGTGACCTCCCAGACGGACGGTACCCCCTGTGACGACACCGTCATGACCTGG
TTGCACACCCTCCAGCGTGGTTGGCTCGAGTTCAGTGCCAATCTCCTGTTTCGGCACCTCGCCCTGACGATTCTCGACCCTGACCGGTCGAGAATCGTCT
CCATCGACTTCGTCGATAACCCCTATCACGGCCACCCCGACGAGGACGACGGCGAACTCTGCTCGTCCAGTCCCACCGACGGCACGACGACCTGCCACCG
CTACTGCACCGCCTACGTCGTCTCGAACGGCAAACCCGTGACGCTGGCGCTGACCTACGTCCGCAGCGACGAGCAGGAAGCCGACGCGGTCGAGCGCGTC
CTCGACCGCGTCGGCGCCTACCCATTCGCCATCGACCTGCTGCTGGCTGATCGAGGCTTCTACAACGGGCGCGTCATCCGTCGTGGACGGGAGCTGGCAA
CCACCGTGATCCCTGTCCAGGAGAAGGGTGAGCGGATGAAAGAGAAACTCGACACGCACTGCTCGTACATGACGACCTACCGGATGTTCAAGGACAGCGA
GCGGGAACTCCGGTTCCCGCTCGCAGTTTCGGTCTCGTATCACAACGGTGACCGAGGGAAACACGGGGAGGTGGTGCGGGGGTACGTGGCGTGCGATCTG
GCCGATCGCACGCCCACGCAGATCGAGCGTCGCTACCGGAAACGATCGGCGATCGAGACGAGCTATCGGCTGTTTCGCCAGGCGCGAGCGACGACGACAA
CCCAAGATCCACTCGTTCGATTTGCGTTCGTCCTGGTGAGTTTCTTGTTGGAGAATATCTGGTTAGTGCTGCGATGGGCGGTCGTCGCCCGCCCCCGGCG
GGGCGGGCGCGACCTGCCAACGCAGTTCACGTTCGGTACCTTCTGTGACTGGATCAGGCACGTACTGGAACAGGAGTTGGAGCGTCGGTGGGAGATAGAG
ATGAACAGAACTGGCGTCCCGGACGCATACGGATCGGCCGCGGGCTGAACGCTCAGCCCGCGGCCTCGGGGTGCCCGCTGTGAGCGGCAGCTCTCAGTTG
AGACGTCGACATCGTTCGACACAGCTCATCTCGGCACCTCAGAACTCGTTCAGCGTGAAGTCACCTCAAGAACACGGCGGTGATCGCTGGAGAGACTCAC
CGATCCAGCGACCCGCCGAAACATCGATTGGGAAGTACCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1171 bp | 390 aa | 78 | 1248 | + | No |
Chemistry : DDE
ORF sequence :
MLDLPEPDGVLSARDVKEVAADVITELPLPGIEGSPLDSGDIWPVVTMASVNQTSVWDVTSQTDGTPCDDTVMTWLHTLQRGWLEFSANLLFRHLALTIL
DPDRSRIVSIDFVDNPYHGHPDEDDGELCSSSPTDGTTTCHRYCTAYVVSNGKPVTLALTYVRSDEQEADAVERVLDRVGAYPFAIDLLLADRGFYNGRV
IRRGRELATTVIPVQEKGERMKEKLDTHCSYMTTYRMFKDSERELRFPLAVSVSYHNGDRGKHGEVVRGYVACDLADRTPTQIERRYRKRSAIETSYRLF
RQARATTTTQDPLVRFAFVLVSFLLENIWLVLRWAVVARPRRGGRDLPTQFTFGTFCDWIRHVLEQELERRWEIEMNRTGVPDAYGSAAG
DPDRSRIVSIDFVDNPYHGHPDEDDGELCSSSPTDGTTTCHRYCTAYVVSNGKPVTLALTYVRSDEQEADAVERVLDRVGAYPFAIDLLLADRGFYNGRV
IRRGRELATTVIPVQEKGERMKEKLDTHCSYMTTYRMFKDSERELRFPLAVSVSYHNGDRGKHGEVVRGYVACDLADRTPTQIERRYRKRSAIETSYRLF
RQARATTTTQDPLVRFAFVLVSFLLENIWLVLRWAVVARPRRGGRDLPTQFTFGTFCDWIRHVLEQELERRWEIEMNRTGVPDAYGSAAG
Blast result :
Comments
ISNamo6 is 85% aa similar to ISHla9.
IS_pep_1 is Nmlp_2630.
IS_pep_1 is Nmlp_2630.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513