ISHth1

  • Family ISH6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AOMF01000159 ND Halococcus thailandensis
Halococcus thailandensis JCM 13552
DNA section
IS Length : 1445 bp

Ends


IR Length : 23/27

IRL : GGTGGTGTCGCAAAGCGGTCTAGACTTCGGTAGCAACTGACTCCTCTCAG
IRR : GGTCGTGTCGCAAAGTCCTCTAGACTTTGCCTCTGGTAGCCTCGACTGTG

Insertion site


Left flankDirect repeatRight flankDR Length
CGAGACCACCNAATTCGNACCA0

DNA sequence

GGTGGTGTCGCAAAGCGGTCTAGACTTCGGTAGCAACTGACTCCTCTCAGGAAGGGGTTGTCTCTGGTGACCAAACCGAGACCACCCCATGCACGCTGAA
ATCAACGTGCGGTTCGAACTCAGTATCGACGACAACAAAACCATACCGCTCGCCGCACTCGCCGAGTTCGTCACCGACCAGAACATCGAATCGGCACTCC
TCGAAGAGCTCGTCGAGAGCCTCGACGCGAGCCGCGTCGAGGCGCTCTGTGGCGAAAAATACGCCCACGGCAACGGTGACCAGCGGTTCCAGCGCCGCGG
CACCGACCCCCGCACAGCCGTTACAACCGCCGGCGAGCACGAGTTCGACCTCCACTACGTCGAAGATACAGCCGCTGACCACGACGAACCGAGCTATCTT
CGGCCCGTCGAAGACGTCGTCGACTTCGACGGGCAGAACCGCTATCAACAGGATATCGCGGCCAAGAGCGTTGATCTCGCTACCTCTCTCAGCTATCGGG
ATGCCGCCGATCACGGCGACGGCTTCGTTTCGATGCCGTCGCCAGATACCATCAACCGCCGTGCCAAAGAATACGGCAGCAAACTCAAGCAGTTCCTTCC
GGACTGTGTTGGCGGAACGGACGCTGACGCTGTCATCGCCGACGGGACGAAGTGCCACAGCCAGGACGAAGACCGCTCGTACCACTCCGTCCAAGCAACG
CTTGGCGAGGATACCGCCGCGGACTCACGATCCCTGCTGGATCTGTCGGTCAACGCTGACTGGAACGAGACAGCAGCTGCTCTCGATGACATCGACGCAG
TCACTGACGACGCTGCGGTCGTCAGTGACGCTGATGGTAATATCGTCACGGCGTTTACCGACGAAAGCCGCGAGCATCAGCTCGATCTTGTTCACGTTGG
CCGGACGCTGGGCTACAATCTCTGGGATGACGGCGTGTTCCCCCTGGAGCGGCGCACCGAGATCATCACGGAAGTGATCGACGAGGTGTTCCATCTGAAG
AACTCGGTTGCCAAGCACCTTCCTGAAGAGGAGTTCGCGGCGATCCGCGAGCGGATCGCGCGAACGACCAAGCGTATTGAGAAGACAGCGTGGCAGCTCT
CGCAGTATGGTTCGGGGAAGGCCGCAAGGTATCTCCGGCGGTGGCTGCCGTCGATTGTGACGTTCGCCGAACAGGCTCTTGAGGGGTTCGAGGTGCCGTG
GACCTCGAACCCCGTGGAACGAGCGATGGGAGAAGTCTCCAAGCGCTGCAAGAACCAGTGGATGCGCTGGACAGAGGCTGGGTTAGAGGCGTTACTCCAA
CTCAGGCTCGTGAAGTACGCCAATCCAGACCACTACCGAACGTTCTTCGACGAACTCCTCAACCGATCAACCAAAACAACCATGAGCTGTGACCTCACAG
TCGAGGCTACCAGAGGCAAAGTCTAGAGGACTTTGCGACACGACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1338 bp445 aa891426+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHAEINVRFELSIDDNKTIPLAALAEFVTDQNIESALLEELVESLDASRVEALCGEKYAHGNGDQRFQRRGTDPRTAVTTAGEHEFDLHYVEDTAADHDE
PSYLRPVEDVVDFDGQNRYQQDIAAKSVDLATSLSYRDAADHGDGFVSMPSPDTINRRAKEYGSKLKQFLPDCVGGTDADAVIADGTKCHSQDEDRSYHS
VQATLGEDTAADSRSLLDLSVNADWNETAAALDDIDAVTDDAAVVSDADGNIVTAFTDESREHQLDLVHVGRTLGYNLWDDGVFPLERRTEIITEVIDEV
FHLKNSVAKHLPEEEFAAIRERIARTTKRIEKTAWQLSQYGSGKAARYLRRWLPSIVTFAEQALEGFEVPWTSNPVERAMGEVSKRCKNQWMRWTEAGLE
ALLQLRLVKYANPDHYRTFFDELLNRSTKTTMSCDLTVEATRGKV

 

Blast result :
Comments
ISHth1 is 91% aa similar to ISH6.
References
1] ISfinder annotation (2013)
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.