ISHth1
- Family ISH6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AOMF01000159 | ND | Halococcus thailandensis | Halococcus thailandensis JCM 13552 |
DNA section
IS Length : 1445 bp
Ends
IR Length : 23/27
IRL : GGTGGTGTCGCAAAGCGGTCTAGACTTCGGTAGCAACTGACTCCTCTCAG
IRR : GGTCGTGTCGCAAAGTCCTCTAGACTTTGCCTCTGGTAGCCTCGACTGTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGAGACCACCN | AATTCGNACCA | 0 |
DNA sequence
GGTGGTGTCGCAAAGCGGTCTAGACTTCGGTAGCAACTGACTCCTCTCAGGAAGGGGTTGTCTCTGGTGACCAAACCGAGACCACCCCATGCACGCTGAA
ATCAACGTGCGGTTCGAACTCAGTATCGACGACAACAAAACCATACCGCTCGCCGCACTCGCCGAGTTCGTCACCGACCAGAACATCGAATCGGCACTCC
TCGAAGAGCTCGTCGAGAGCCTCGACGCGAGCCGCGTCGAGGCGCTCTGTGGCGAAAAATACGCCCACGGCAACGGTGACCAGCGGTTCCAGCGCCGCGG
CACCGACCCCCGCACAGCCGTTACAACCGCCGGCGAGCACGAGTTCGACCTCCACTACGTCGAAGATACAGCCGCTGACCACGACGAACCGAGCTATCTT
CGGCCCGTCGAAGACGTCGTCGACTTCGACGGGCAGAACCGCTATCAACAGGATATCGCGGCCAAGAGCGTTGATCTCGCTACCTCTCTCAGCTATCGGG
ATGCCGCCGATCACGGCGACGGCTTCGTTTCGATGCCGTCGCCAGATACCATCAACCGCCGTGCCAAAGAATACGGCAGCAAACTCAAGCAGTTCCTTCC
GGACTGTGTTGGCGGAACGGACGCTGACGCTGTCATCGCCGACGGGACGAAGTGCCACAGCCAGGACGAAGACCGCTCGTACCACTCCGTCCAAGCAACG
CTTGGCGAGGATACCGCCGCGGACTCACGATCCCTGCTGGATCTGTCGGTCAACGCTGACTGGAACGAGACAGCAGCTGCTCTCGATGACATCGACGCAG
TCACTGACGACGCTGCGGTCGTCAGTGACGCTGATGGTAATATCGTCACGGCGTTTACCGACGAAAGCCGCGAGCATCAGCTCGATCTTGTTCACGTTGG
CCGGACGCTGGGCTACAATCTCTGGGATGACGGCGTGTTCCCCCTGGAGCGGCGCACCGAGATCATCACGGAAGTGATCGACGAGGTGTTCCATCTGAAG
AACTCGGTTGCCAAGCACCTTCCTGAAGAGGAGTTCGCGGCGATCCGCGAGCGGATCGCGCGAACGACCAAGCGTATTGAGAAGACAGCGTGGCAGCTCT
CGCAGTATGGTTCGGGGAAGGCCGCAAGGTATCTCCGGCGGTGGCTGCCGTCGATTGTGACGTTCGCCGAACAGGCTCTTGAGGGGTTCGAGGTGCCGTG
GACCTCGAACCCCGTGGAACGAGCGATGGGAGAAGTCTCCAAGCGCTGCAAGAACCAGTGGATGCGCTGGACAGAGGCTGGGTTAGAGGCGTTACTCCAA
CTCAGGCTCGTGAAGTACGCCAATCCAGACCACTACCGAACGTTCTTCGACGAACTCCTCAACCGATCAACCAAAACAACCATGAGCTGTGACCTCACAG
TCGAGGCTACCAGAGGCAAAGTCTAGAGGACTTTGCGACACGACC
ATCAACGTGCGGTTCGAACTCAGTATCGACGACAACAAAACCATACCGCTCGCCGCACTCGCCGAGTTCGTCACCGACCAGAACATCGAATCGGCACTCC
TCGAAGAGCTCGTCGAGAGCCTCGACGCGAGCCGCGTCGAGGCGCTCTGTGGCGAAAAATACGCCCACGGCAACGGTGACCAGCGGTTCCAGCGCCGCGG
CACCGACCCCCGCACAGCCGTTACAACCGCCGGCGAGCACGAGTTCGACCTCCACTACGTCGAAGATACAGCCGCTGACCACGACGAACCGAGCTATCTT
CGGCCCGTCGAAGACGTCGTCGACTTCGACGGGCAGAACCGCTATCAACAGGATATCGCGGCCAAGAGCGTTGATCTCGCTACCTCTCTCAGCTATCGGG
ATGCCGCCGATCACGGCGACGGCTTCGTTTCGATGCCGTCGCCAGATACCATCAACCGCCGTGCCAAAGAATACGGCAGCAAACTCAAGCAGTTCCTTCC
GGACTGTGTTGGCGGAACGGACGCTGACGCTGTCATCGCCGACGGGACGAAGTGCCACAGCCAGGACGAAGACCGCTCGTACCACTCCGTCCAAGCAACG
CTTGGCGAGGATACCGCCGCGGACTCACGATCCCTGCTGGATCTGTCGGTCAACGCTGACTGGAACGAGACAGCAGCTGCTCTCGATGACATCGACGCAG
TCACTGACGACGCTGCGGTCGTCAGTGACGCTGATGGTAATATCGTCACGGCGTTTACCGACGAAAGCCGCGAGCATCAGCTCGATCTTGTTCACGTTGG
CCGGACGCTGGGCTACAATCTCTGGGATGACGGCGTGTTCCCCCTGGAGCGGCGCACCGAGATCATCACGGAAGTGATCGACGAGGTGTTCCATCTGAAG
AACTCGGTTGCCAAGCACCTTCCTGAAGAGGAGTTCGCGGCGATCCGCGAGCGGATCGCGCGAACGACCAAGCGTATTGAGAAGACAGCGTGGCAGCTCT
CGCAGTATGGTTCGGGGAAGGCCGCAAGGTATCTCCGGCGGTGGCTGCCGTCGATTGTGACGTTCGCCGAACAGGCTCTTGAGGGGTTCGAGGTGCCGTG
GACCTCGAACCCCGTGGAACGAGCGATGGGAGAAGTCTCCAAGCGCTGCAAGAACCAGTGGATGCGCTGGACAGAGGCTGGGTTAGAGGCGTTACTCCAA
CTCAGGCTCGTGAAGTACGCCAATCCAGACCACTACCGAACGTTCTTCGACGAACTCCTCAACCGATCAACCAAAACAACCATGAGCTGTGACCTCACAG
TCGAGGCTACCAGAGGCAAAGTCTAGAGGACTTTGCGACACGACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1338 bp | 445 aa | 89 | 1426 | + | No |
Chemistry : DDE
ORF sequence :
MHAEINVRFELSIDDNKTIPLAALAEFVTDQNIESALLEELVESLDASRVEALCGEKYAHGNGDQRFQRRGTDPRTAVTTAGEHEFDLHYVEDTAADHDE
PSYLRPVEDVVDFDGQNRYQQDIAAKSVDLATSLSYRDAADHGDGFVSMPSPDTINRRAKEYGSKLKQFLPDCVGGTDADAVIADGTKCHSQDEDRSYHS
VQATLGEDTAADSRSLLDLSVNADWNETAAALDDIDAVTDDAAVVSDADGNIVTAFTDESREHQLDLVHVGRTLGYNLWDDGVFPLERRTEIITEVIDEV
FHLKNSVAKHLPEEEFAAIRERIARTTKRIEKTAWQLSQYGSGKAARYLRRWLPSIVTFAEQALEGFEVPWTSNPVERAMGEVSKRCKNQWMRWTEAGLE
ALLQLRLVKYANPDHYRTFFDELLNRSTKTTMSCDLTVEATRGKV
PSYLRPVEDVVDFDGQNRYQQDIAAKSVDLATSLSYRDAADHGDGFVSMPSPDTINRRAKEYGSKLKQFLPDCVGGTDADAVIADGTKCHSQDEDRSYHS
VQATLGEDTAADSRSLLDLSVNADWNETAAALDDIDAVTDDAAVVSDADGNIVTAFTDESREHQLDLVHVGRTLGYNLWDDGVFPLERRTEIITEVIDEV
FHLKNSVAKHLPEEEFAAIRERIARTTKRIEKTAWQLSQYGSGKAARYLRRWLPSIVTFAEQALEGFEVPWTSNPVERAMGEVSKRCKNQWMRWTEAGLE
ALLQLRLVKYANPDHYRTFFDELLNRSTKTTMSCDLTVEATRGKV
Blast result :
Comments
ISHth1 is 91% aa similar to ISH6.
References
1] ISfinder annotation (2013)
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.