ISNamo4
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis 8.8.11 |
DNA section
IS Length : 1069 bp
Ends
IR Length : 24/28
IRL : GAGGGTGTCATAGAACAGTTCGCATACCAAAGAGCAGGGTGAACGCTGAG
IRR : GAGGGTGTCATAGAACTCTTCTCACACCGTGATGATCGTGCTTCCCGGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAACGACGTA | GGTGAAGACA | 0 |
DNA sequence
GAGGGTGTCATAGAACAGTTCGCATACCAAAGAGCAGGGTGAACGCTGAGGTGGAATGAGTCCAGCGATCCTGCAAGATGATCCTTCGGTAGAATCGTTC
TTCAATGTCGTGGAAACGGAGACGTTGGCGTTGTTCGAGCATCTCTCGTTCGAGTTTCTCGAAGGGTTCGACGTGTTCGCCCCGGCGGAGACGGGGCGAA
CACGAGATCTTGAACCGCCCGAGATGATGCGTGGCTTCCTCCACTGCTATTACAAGGACATCTACGGCATCCGTCCGGTTGCACGAGAACTGAACAACAC
CATTGTCTGGCTCAGCTGTGGCTTCGATCGACCGCCGTCGAGAGACGCGGTCGATCGCTTTCTCACCGACCTCGAACACGTTGTTGACGAAGTCTTCGAC
TGGCTCGTCGAGCAGGCCGCCCGGCGCGGCCTGCTCGACTTGACCTACTGTATCGATTCAACCGACGTGAGGGCGATGCCCGCCGATCAAGACGCCTCGA
AGTGCTACGATCCAACCGACGACGAGTACTACTACGGCTACGGTTGCACGATCGCCTCGACCGGGCAAAAGATCCCGATTGCAGCCGAGTTCACCGAGAG
TAAGCAAGCGCCAGAAGAGACTGCGATGCGCGTCACGCGTGACGCGCTCGCCGTCGCCAAGCCGATCTGGATGGTCGGTGACAGCGCCTACGACACGCTC
GACTGGCACGACCACCTGCTGGCCGCAGGGGTCGTGCCAGTCGCTCCGTACAACGCCCGAAACGCCGATGACCCAAAAGATATCCAGTACAGAGTCGAAG
GCCGCATCGACGAACACAGCGAAGACGTCCAACTGAAGCAATCCACGTTGGATGAGACGTACAACCGCCGCACAGGAGTCGAACGGACCAACGAATCAGT
GAACGACTGCGGCCTCGGGCGAACGCACGCCCGAGGCCGCGTCCACGCGCGAGCGCAGGTGTTCCTCTCGCTGTGCCTTCGCCTCGTCGTCGCTATCACT
AACTACGAACGCGGAGACAATCCGGGAAGCACGATCATCACGGTGTGAGAAGAGTTCTATGACACCCTC
TTCAATGTCGTGGAAACGGAGACGTTGGCGTTGTTCGAGCATCTCTCGTTCGAGTTTCTCGAAGGGTTCGACGTGTTCGCCCCGGCGGAGACGGGGCGAA
CACGAGATCTTGAACCGCCCGAGATGATGCGTGGCTTCCTCCACTGCTATTACAAGGACATCTACGGCATCCGTCCGGTTGCACGAGAACTGAACAACAC
CATTGTCTGGCTCAGCTGTGGCTTCGATCGACCGCCGTCGAGAGACGCGGTCGATCGCTTTCTCACCGACCTCGAACACGTTGTTGACGAAGTCTTCGAC
TGGCTCGTCGAGCAGGCCGCCCGGCGCGGCCTGCTCGACTTGACCTACTGTATCGATTCAACCGACGTGAGGGCGATGCCCGCCGATCAAGACGCCTCGA
AGTGCTACGATCCAACCGACGACGAGTACTACTACGGCTACGGTTGCACGATCGCCTCGACCGGGCAAAAGATCCCGATTGCAGCCGAGTTCACCGAGAG
TAAGCAAGCGCCAGAAGAGACTGCGATGCGCGTCACGCGTGACGCGCTCGCCGTCGCCAAGCCGATCTGGATGGTCGGTGACAGCGCCTACGACACGCTC
GACTGGCACGACCACCTGCTGGCCGCAGGGGTCGTGCCAGTCGCTCCGTACAACGCCCGAAACGCCGATGACCCAAAAGATATCCAGTACAGAGTCGAAG
GCCGCATCGACGAACACAGCGAAGACGTCCAACTGAAGCAATCCACGTTGGATGAGACGTACAACCGCCGCACAGGAGTCGAACGGACCAACGAATCAGT
GAACGACTGCGGCCTCGGGCGAACGCACGCCCGAGGCCGCGTCCACGCGCGAGCGCAGGTGTTCCTCTCGCTGTGCCTTCGCCTCGTCGTCGCTATCACT
AACTACGAACGCGGAGACAATCCGGGAAGCACGATCATCACGGTGTGAGAAGAGTTCTATGACACCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
993 bp | 330 aa | 56 | 1048 | + | No |
Chemistry : DDE
ORF sequence :
MSPAILQDDPSVESFFNVVETETLALFEHLSFEFLEGFDVFAPAETGRTRDLEPPEMMRGFLHCYYKDIYGIRPVARELNNTIVWLSCGFDRPPSRDAVD
RFLTDLEHVVDEVFDWLVEQAARRGLLDLTYCIDSTDVRAMPADQDASKCYDPTDDEYYYGYGCTIASTGQKIPIAAEFTESKQAPEETAMRVTRDALAV
AKPIWMVGDSAYDTLDWHDHLLAAGVVPVAPYNARNADDPKDIQYRVEGRIDEHSEDVQLKQSTLDETYNRRTGVERTNESVNDCGLGRTHARGRVHARA
QVFLSLCLRLVVAITNYERGDNPGSTIITV
RFLTDLEHVVDEVFDWLVEQAARRGLLDLTYCIDSTDVRAMPADQDASKCYDPTDDEYYYGYGCTIASTGQKIPIAAEFTESKQAPEETAMRVTRDALAV
AKPIWMVGDSAYDTLDWHDHLLAAGVVPVAPYNARNADDPKDIQYRVEGRIDEHSEDVQLKQSTLDETYNRRTGVERTNESVNDCGLGRTHARGRVHARA
QVFLSLCLRLVVAITNYERGDNPGSTIITV
Blast result :
Comments
ISNamo4 is 96% aa similar to ISH11.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513