ISNamo4

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF582854 ND Natronomonas moolapensis
Natronomonas moolapensis 8.8.11
DNA section
IS Length : 1069 bp

Ends


IR Length : 24/28

IRL : GAGGGTGTCATAGAACAGTTCGCATACCAAAGAGCAGGGTGAACGCTGAG
IRR : GAGGGTGTCATAGAACTCTTCTCACACCGTGATGATCGTGCTTCCCGGAT

Insertion site


Left flankDirect repeatRight flankDR Length
AAACGACGTAGGTGAAGACA0

DNA sequence

GAGGGTGTCATAGAACAGTTCGCATACCAAAGAGCAGGGTGAACGCTGAGGTGGAATGAGTCCAGCGATCCTGCAAGATGATCCTTCGGTAGAATCGTTC
TTCAATGTCGTGGAAACGGAGACGTTGGCGTTGTTCGAGCATCTCTCGTTCGAGTTTCTCGAAGGGTTCGACGTGTTCGCCCCGGCGGAGACGGGGCGAA
CACGAGATCTTGAACCGCCCGAGATGATGCGTGGCTTCCTCCACTGCTATTACAAGGACATCTACGGCATCCGTCCGGTTGCACGAGAACTGAACAACAC
CATTGTCTGGCTCAGCTGTGGCTTCGATCGACCGCCGTCGAGAGACGCGGTCGATCGCTTTCTCACCGACCTCGAACACGTTGTTGACGAAGTCTTCGAC
TGGCTCGTCGAGCAGGCCGCCCGGCGCGGCCTGCTCGACTTGACCTACTGTATCGATTCAACCGACGTGAGGGCGATGCCCGCCGATCAAGACGCCTCGA
AGTGCTACGATCCAACCGACGACGAGTACTACTACGGCTACGGTTGCACGATCGCCTCGACCGGGCAAAAGATCCCGATTGCAGCCGAGTTCACCGAGAG
TAAGCAAGCGCCAGAAGAGACTGCGATGCGCGTCACGCGTGACGCGCTCGCCGTCGCCAAGCCGATCTGGATGGTCGGTGACAGCGCCTACGACACGCTC
GACTGGCACGACCACCTGCTGGCCGCAGGGGTCGTGCCAGTCGCTCCGTACAACGCCCGAAACGCCGATGACCCAAAAGATATCCAGTACAGAGTCGAAG
GCCGCATCGACGAACACAGCGAAGACGTCCAACTGAAGCAATCCACGTTGGATGAGACGTACAACCGCCGCACAGGAGTCGAACGGACCAACGAATCAGT
GAACGACTGCGGCCTCGGGCGAACGCACGCCCGAGGCCGCGTCCACGCGCGAGCGCAGGTGTTCCTCTCGCTGTGCCTTCGCCTCGTCGTCGCTATCACT
AACTACGAACGCGGAGACAATCCGGGAAGCACGATCATCACGGTGTGAGAAGAGTTCTATGACACCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
993 bp330 aa561048+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSPAILQDDPSVESFFNVVETETLALFEHLSFEFLEGFDVFAPAETGRTRDLEPPEMMRGFLHCYYKDIYGIRPVARELNNTIVWLSCGFDRPPSRDAVD
RFLTDLEHVVDEVFDWLVEQAARRGLLDLTYCIDSTDVRAMPADQDASKCYDPTDDEYYYGYGCTIASTGQKIPIAAEFTESKQAPEETAMRVTRDALAV
AKPIWMVGDSAYDTLDWHDHLLAAGVVPVAPYNARNADDPKDIQYRVEGRIDEHSEDVQLKQSTLDETYNRRTGVERTNESVNDCGLGRTHARGRVHARA
QVFLSLCLRLVVAITNYERGDNPGSTIITV

 

Blast result :
Comments
ISNamo4 is 96% aa similar to ISH11.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513