ISNamo3
- Family IS66
- Group ISBst12
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis 8.8.11 |
DNA section
IS Length : 1546 bp
Ends
IR Length : 16/18
IRL : GTACGTGTTTACCCCCAGATGGATATCGTCACTCTCTCGTGAGTGCCACC
IRR : GTATGTGTTTACCCCGAGGATGCAACAGCGGGTACGGTCTGAGCTCGTGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTATCCTAAA | TGATATAG | AACAGGTATT | 8 |
| CTGTTCCATC | TCTTATTC | TAAAAGTGGC | 8 |
| CCATGGTATA | GTACAAAA | TAAGAGCGTC | 8 |
| TTCGGCCTTG | TATTCGAG | GATGTTCGAG | 8 |
| TAGTATATTG | CCCGTTTCTA | 0 |
DNA sequence
GTACGTGTTTACCCCCAGATGGATATCGTCACTCTCTCGTGAGTGCCACCCAACTGGTGTCGTAGACTGATGCAACAGGCGGGCAAACACGCTTTCGAGG
GATGGTCTCCAGACCGGAGACCATCCCGTCTCGCCTGTTCATGACCTCTTCGGAACCTACCAAGGAAGAGATCCTTGAGCGTCTGGTCGCACTTGAGAAA
GAGAACGAGGAACTTCGAGAGGAGAACAAGCGGCTCAGAGCCAAGCTTCGGTGGTACGAGGGACCCCATACACCACCGAGCAAAGACCAATCGGACCAGG
AGGAGTCGTCCTCGTCCGATGGGGACGAGGACGACGAACAACCACGTACTGACGGTGGCACGCCTGGCCGAAAGTCCGGACATGACCCGGAATGGCGCGA
CGCTCCTGACCCGGATCAAGAGATCGAGGTTACCTGTGACTGCTGTCCAGACTGTGGTGAAGCGTTCGACGAGTCGGCGGGCGTCAGCCCCCGACTCGTC
GAGGAACTCCCGGATCCACAGCCACCAGAGGTCACACAGTACAACCGCCATCACTACGAGTGCCACTCCTGTGGTGCCGAGACTGTCGCCTCACACCCCG
ACTGCCCCGATGAGGGGCAGTTCGGGGTGAATGTCATCGCACAGGCGGCGCTCTCTCGGTACGATCACCGCCTTCCCTACCGGAAGATCGCCGATCGCTT
CGAACAACTCCACGGACTGGAGTTCACGGGTGCGTCCGCGTGGCACGCGACCGAGCGCGTTGCACGCGCCGGTCGCTGTGAATACGAGCAGATTCGCCGT
CAGATCCAGCAAGCCGACGTTGTCCACGTTGACGAGACTGGAATTAAACGCGACGGCGAACAGGCATGGATCTGGACGTTCACCACCGAGGAGCACACGC
TGTACGTGGCTAGGGAGAGTCGAGGAAGTGATGTTCCCGCGGAAGTCCTCGGCGAGGACTTCGCGGGAACAGTCGTCTGTGACGGGTGGACGGCGTATCC
GGCTTTCAGCAGCAACCTCCAGCGGTGTTGGGCGCATATTCTACGGGAGGCTGAAGACGCCGCCGAGAAACAGACGGAAGGCGAACCGATCTACCGTGCC
CTCAAACAGCTGTACGTCGCTCTCCAGACCCGGCTGGAGAGCGACTTGACAGTCCGCGAGCGAGCAGAACTCCAACGTGTGGCGCGGAGAGAGCTTGAAT
CGCTGATAGAACGGTCAGTTCCTGACGGACCAGTGGCAACACTACTCGGCAAGATCGAAGGAGGCCTCGACCACTGGCTCACCTTTATCGGTGAGCCAGC
GGTCTCCCCAACGAACAACGCCGCTGAAAATGCGCTCCGTGAGCCAGTGGTTCTCCGGAAAATCATCGGAACACTCCGGAACGACCGCGGTATGTTCGTG
CATGAGACGCTGCTGTCCCTGCTGGCGACGTGCCGCCAGCAGGGACGCAATCCCTACGACGAGTTCAAGCGAATCGCTCGAAACAACGAGATGATTTCAC
GAGCTCAGACCGTACCCGCTGTTGCATCCTCGGGGTAAACACATAC
GATGGTCTCCAGACCGGAGACCATCCCGTCTCGCCTGTTCATGACCTCTTCGGAACCTACCAAGGAAGAGATCCTTGAGCGTCTGGTCGCACTTGAGAAA
GAGAACGAGGAACTTCGAGAGGAGAACAAGCGGCTCAGAGCCAAGCTTCGGTGGTACGAGGGACCCCATACACCACCGAGCAAAGACCAATCGGACCAGG
AGGAGTCGTCCTCGTCCGATGGGGACGAGGACGACGAACAACCACGTACTGACGGTGGCACGCCTGGCCGAAAGTCCGGACATGACCCGGAATGGCGCGA
CGCTCCTGACCCGGATCAAGAGATCGAGGTTACCTGTGACTGCTGTCCAGACTGTGGTGAAGCGTTCGACGAGTCGGCGGGCGTCAGCCCCCGACTCGTC
GAGGAACTCCCGGATCCACAGCCACCAGAGGTCACACAGTACAACCGCCATCACTACGAGTGCCACTCCTGTGGTGCCGAGACTGTCGCCTCACACCCCG
ACTGCCCCGATGAGGGGCAGTTCGGGGTGAATGTCATCGCACAGGCGGCGCTCTCTCGGTACGATCACCGCCTTCCCTACCGGAAGATCGCCGATCGCTT
CGAACAACTCCACGGACTGGAGTTCACGGGTGCGTCCGCGTGGCACGCGACCGAGCGCGTTGCACGCGCCGGTCGCTGTGAATACGAGCAGATTCGCCGT
CAGATCCAGCAAGCCGACGTTGTCCACGTTGACGAGACTGGAATTAAACGCGACGGCGAACAGGCATGGATCTGGACGTTCACCACCGAGGAGCACACGC
TGTACGTGGCTAGGGAGAGTCGAGGAAGTGATGTTCCCGCGGAAGTCCTCGGCGAGGACTTCGCGGGAACAGTCGTCTGTGACGGGTGGACGGCGTATCC
GGCTTTCAGCAGCAACCTCCAGCGGTGTTGGGCGCATATTCTACGGGAGGCTGAAGACGCCGCCGAGAAACAGACGGAAGGCGAACCGATCTACCGTGCC
CTCAAACAGCTGTACGTCGCTCTCCAGACCCGGCTGGAGAGCGACTTGACAGTCCGCGAGCGAGCAGAACTCCAACGTGTGGCGCGGAGAGAGCTTGAAT
CGCTGATAGAACGGTCAGTTCCTGACGGACCAGTGGCAACACTACTCGGCAAGATCGAAGGAGGCCTCGACCACTGGCTCACCTTTATCGGTGAGCCAGC
GGTCTCCCCAACGAACAACGCCGCTGAAAATGCGCTCCGTGAGCCAGTGGTTCTCCGGAAAATCATCGGAACACTCCGGAACGACCGCGGTATGTTCGTG
CATGAGACGCTGCTGTCCCTGCTGGCGACGTGCCGCCAGCAGGGACGCAATCCCTACGACGAGTTCAAGCGAATCGCTCGAAACAACGAGATGATTTCAC
GAGCTCAGACCGTACCCGCTGTTGCATCCTCGGGGTAAACACATAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1437 bp | 478 aa | 102 | 1538 | + | No |
Chemistry : DDE
ORF sequence :
MVSRPETIPSRLFMTSSEPTKEEILERLVALEKENEELREENKRLRAKLRWYEGPHTPPSKDQSDQEESSSSDGDEDDEQPRTDGGTPGRKSGHDPEWRD
APDPDQEIEVTCDCCPDCGEAFDESAGVSPRLVEELPDPQPPEVTQYNRHHYECHSCGAETVASHPDCPDEGQFGVNVIAQAALSRYDHRLPYRKIADRF
EQLHGLEFTGASAWHATERVARAGRCEYEQIRRQIQQADVVHVDETGIKRDGEQAWIWTFTTEEHTLYVARESRGSDVPAEVLGEDFAGTVVCDGWTAYP
AFSSNLQRCWAHILREAEDAAEKQTEGEPIYRALKQLYVALQTRLESDLTVRERAELQRVARRELESLIERSVPDGPVATLLGKIEGGLDHWLTFIGEPA
VSPTNNAAENALREPVVLRKIIGTLRNDRGMFVHETLLSLLATCRQQGRNPYDEFKRIARNNEMISRAQTVPAVASSG
APDPDQEIEVTCDCCPDCGEAFDESAGVSPRLVEELPDPQPPEVTQYNRHHYECHSCGAETVASHPDCPDEGQFGVNVIAQAALSRYDHRLPYRKIADRF
EQLHGLEFTGASAWHATERVARAGRCEYEQIRRQIQQADVVHVDETGIKRDGEQAWIWTFTTEEHTLYVARESRGSDVPAEVLGEDFAGTVVCDGWTAYP
AFSSNLQRCWAHILREAEDAAEKQTEGEPIYRALKQLYVALQTRLESDLTVRERAELQRVARRELESLIERSVPDGPVATLLGKIEGGLDHWLTFIGEPA
VSPTNNAAENALREPVVLRKIIGTLRNDRGMFVHETLLSLLATCRQQGRNPYDEFKRIARNNEMISRAQTVPAVASSG
Blast result :
Comments
ISNamo3 is 94% aa similar to ISHwa10.
The transposase corresponds to Nmlp_1625, Nmlp_1734, Nmlp_2513, Nmlp_2550, Nmlp_2918 in the genome.
The transposase corresponds to Nmlp_1625, Nmlp_1734, Nmlp_2513, Nmlp_2550, Nmlp_2918 in the genome.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513